Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01210 and HGI48_RS01215 are separated by 15 nucleotides HGI48_RS01215 and HGI48_RS01220 are separated by 599 nucleotides
HGI48_RS01210: HGI48_RS01210 - phosphoribosylamine--glycine ligase, at 269,210 to 270,499
_RS01210
HGI48_RS01215: HGI48_RS01215 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 270,515 to 272,104
_RS01215
HGI48_RS01220: HGI48_RS01220 - 16S ribosomal RNA, at 272,704 to 274,253
_RS01220
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 269.577 kb on - strand, within HGI48_RS01210 at 269.577 kb on - strand, within HGI48_RS01210 at 269.688 kb on + strand, within HGI48_RS01210 at 269.688 kb on + strand, within HGI48_RS01210 at 269.703 kb on + strand, within HGI48_RS01210 at 269.703 kb on + strand at 269.703 kb on + strand, within HGI48_RS01210 at 269.703 kb on + strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.746 kb on + strand, within HGI48_RS01210 at 269.746 kb on + strand, within HGI48_RS01210 at 269.747 kb on - strand, within HGI48_RS01210 at 269.802 kb on + strand, within HGI48_RS01210 at 269.803 kb on - strand, within HGI48_RS01210 at 270.077 kb on - strand, within HGI48_RS01210 at 270.099 kb on + strand at 270.099 kb on + strand, within HGI48_RS01210 at 270.099 kb on + strand at 270.100 kb on - strand, within HGI48_RS01210 at 270.100 kb on - strand, within HGI48_RS01210 at 270.100 kb on - strand, within HGI48_RS01210 at 270.100 kb on - strand at 270.100 kb on - strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.363 kb on - strand, within HGI48_RS01210 at 270.363 kb on - strand, within HGI48_RS01210 at 270.363 kb on - strand, within HGI48_RS01210 at 270.363 kb on - strand at 270.363 kb on - strand, within HGI48_RS01210 at 270.414 kb on + strand at 270.414 kb on + strand at 270.415 kb on - strand at 270.415 kb on - strand at 270.415 kb on - strand at 270.479 kb on - strand at 270.484 kb on + strand at 270.484 kb on + strand at 270.493 kb on + strand at 270.493 kb on + strand at 270.494 kb on - strand at 270.505 kb on + strand at 270.750 kb on + strand, within HGI48_RS01215 at 270.751 kb on - strand, within HGI48_RS01215 at 270.805 kb on - strand, within HGI48_RS01215 at 271.020 kb on - strand, within HGI48_RS01215 at 271.020 kb on - strand, within HGI48_RS01215 at 271.020 kb on - strand, within HGI48_RS01215 at 271.139 kb on - strand, within HGI48_RS01215 at 271.183 kb on - strand at 271.194 kb on + strand, within HGI48_RS01215 at 271.194 kb on + strand at 271.321 kb on - strand, within HGI48_RS01215 at 271.385 kb on + strand, within HGI48_RS01215 at 271.385 kb on + strand, within HGI48_RS01215 at 271.385 kb on + strand at 271.385 kb on + strand, within HGI48_RS01215 at 271.386 kb on - strand, within HGI48_RS01215 at 271.386 kb on - strand, within HGI48_RS01215 at 271.387 kb on + strand, within HGI48_RS01215 at 271.387 kb on + strand, within HGI48_RS01215 at 271.389 kb on + strand at 271.389 kb on + strand, within HGI48_RS01215 at 271.389 kb on + strand, within HGI48_RS01215 at 271.390 kb on - strand at 271.390 kb on - strand, within HGI48_RS01215 at 271.390 kb on - strand, within HGI48_RS01215 at 271.390 kb on - strand, within HGI48_RS01215 at 271.390 kb on - strand at 271.517 kb on - strand, within HGI48_RS01215 at 271.527 kb on + strand, within HGI48_RS01215 at 271.527 kb on + strand, within HGI48_RS01215 at 271.527 kb on + strand, within HGI48_RS01215 at 271.528 kb on - strand, within HGI48_RS01215 at 271.599 kb on + strand, within HGI48_RS01215 at 271.647 kb on + strand, within HGI48_RS01215 at 271.660 kb on + strand, within HGI48_RS01215 at 271.664 kb on + strand, within HGI48_RS01215 at 271.664 kb on + strand, within HGI48_RS01215 at 271.664 kb on + strand, within HGI48_RS01215 at 271.665 kb on - strand at 271.665 kb on - strand, within HGI48_RS01215 at 271.665 kb on - strand at 271.669 kb on + strand at 271.691 kb on - strand at 271.996 kb on + strand at 271.996 kb on + strand at 272.064 kb on - strand at 272.064 kb on - strand at 272.086 kb on + strand at 272.125 kb on + strand at 272.125 kb on + strand at 272.125 kb on + strand at 272.125 kb on + strand at 272.125 kb on + strand at 272.126 kb on - strand at 272.126 kb on - strand at 272.126 kb on - strand at 272.126 kb on - strand at 272.133 kb on + strand at 272.133 kb on + strand at 272.138 kb on + strand at 272.156 kb on + strand at 272.156 kb on + strand at 272.181 kb on - strand at 272.320 kb on + strand at 272.321 kb on - strand at 272.407 kb on - strand at 272.407 kb on - strand at 272.409 kb on - strand at 272.952 kb on + strand, within HGI48_RS01220 at 272.952 kb on + strand, within HGI48_RS01220 at 272.952 kb on + strand, within HGI48_RS01220 at 272.955 kb on + strand, within HGI48_RS01220
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 269,577 - HGI48_RS01210 0.28 -2.7 269,577 - HGI48_RS01210 0.28 -1.9 269,688 + HGI48_RS01210 0.37 -1.9 269,688 + HGI48_RS01210 0.37 -2.6 269,703 + HGI48_RS01210 0.38 -1.1 269,703 + -0.1 269,703 + HGI48_RS01210 0.38 -1.2 269,703 + HGI48_RS01210 0.38 -1.9 269,704 - HGI48_RS01210 0.38 -2.2 269,704 - HGI48_RS01210 0.38 -2.1 269,704 - HGI48_RS01210 0.38 -1.6 269,704 - HGI48_RS01210 0.38 -1.0 269,704 - HGI48_RS01210 0.38 -1.1 269,704 - HGI48_RS01210 0.38 -3.1 269,746 + HGI48_RS01210 0.42 -3.0 269,746 + HGI48_RS01210 0.42 -0.9 269,747 - HGI48_RS01210 0.42 -2.1 269,802 + HGI48_RS01210 0.46 -1.1 269,803 - HGI48_RS01210 0.46 -2.7 270,077 - HGI48_RS01210 0.67 -1.9 270,099 + +0.9 270,099 + HGI48_RS01210 0.69 -1.1 270,099 + -0.7 270,100 - HGI48_RS01210 0.69 -3.1 270,100 - HGI48_RS01210 0.69 -2.2 270,100 - HGI48_RS01210 0.69 -1.8 270,100 - -0.1 270,100 - HGI48_RS01210 0.69 -1.1 270,362 + HGI48_RS01210 0.89 -0.1 270,362 + HGI48_RS01210 0.89 -1.4 270,362 + HGI48_RS01210 0.89 -1.4 270,362 + HGI48_RS01210 0.89 -1.9 270,362 + HGI48_RS01210 0.89 -1.1 270,362 + HGI48_RS01210 0.89 -1.9 270,362 + HGI48_RS01210 0.89 +0.5 270,363 - HGI48_RS01210 0.89 -0.1 270,363 - HGI48_RS01210 0.89 -2.7 270,363 - HGI48_RS01210 0.89 -1.1 270,363 - -0.1 270,363 - HGI48_RS01210 0.89 -2.6 270,414 + -0.1 270,414 + -1.8 270,415 - -1.7 270,415 - -0.3 270,415 - -1.7 270,479 - -2.6 270,484 + -0.7 270,484 + -2.1 270,493 + -2.4 270,493 + -1.7 270,494 - -1.4 270,505 + +1.5 270,750 + HGI48_RS01215 0.15 -1.4 270,751 - HGI48_RS01215 0.15 -2.2 270,805 - HGI48_RS01215 0.18 -2.1 271,020 - HGI48_RS01215 0.32 -3.1 271,020 - HGI48_RS01215 0.32 -0.9 271,020 - HGI48_RS01215 0.32 +0.1 271,139 - HGI48_RS01215 0.39 -3.9 271,183 - -0.1 271,194 + HGI48_RS01215 0.43 -2.4 271,194 + +0.3 271,321 - HGI48_RS01215 0.51 -1.9 271,385 + HGI48_RS01215 0.55 +0.9 271,385 + HGI48_RS01215 0.55 -1.1 271,385 + -0.7 271,385 + HGI48_RS01215 0.55 -1.9 271,386 - HGI48_RS01215 0.55 -1.1 271,386 - HGI48_RS01215 0.55 -1.4 271,387 + HGI48_RS01215 0.55 -1.7 271,387 + HGI48_RS01215 0.55 -1.1 271,389 + -0.7 271,389 + HGI48_RS01215 0.55 +0.4 271,389 + HGI48_RS01215 0.55 +0.2 271,390 - +0.9 271,390 - HGI48_RS01215 0.55 -0.1 271,390 - HGI48_RS01215 0.55 -0.1 271,390 - HGI48_RS01215 0.55 -1.4 271,390 - +0.9 271,517 - HGI48_RS01215 0.63 -1.1 271,527 + HGI48_RS01215 0.64 +0.1 271,527 + HGI48_RS01215 0.64 -3.6 271,527 + HGI48_RS01215 0.64 -1.4 271,528 - HGI48_RS01215 0.64 -1.0 271,599 + HGI48_RS01215 0.68 -2.7 271,647 + HGI48_RS01215 0.71 -1.4 271,660 + HGI48_RS01215 0.72 +0.6 271,664 + HGI48_RS01215 0.72 -0.4 271,664 + HGI48_RS01215 0.72 -2.5 271,664 + HGI48_RS01215 0.72 -0.1 271,665 - -0.7 271,665 - HGI48_RS01215 0.72 -0.1 271,665 - -0.7 271,669 + -0.1 271,691 - -0.7 271,996 + -2.5 271,996 + -2.2 272,064 - -0.1 272,064 - -0.7 272,086 + +0.5 272,125 + -2.4 272,125 + -1.1 272,125 + -2.2 272,125 + +1.5 272,125 + -2.2 272,126 - -1.6 272,126 - -0.3 272,126 - -1.2 272,126 - -0.7 272,133 + -2.9 272,133 + -0.4 272,138 + -1.2 272,156 + -0.6 272,156 + +0.5 272,181 - -1.1 272,320 + -0.7 272,321 - +2.5 272,407 - +0.9 272,407 - +0.3 272,409 - +1.3 272,952 + HGI48_RS01220 0.16 +0.3 272,952 + HGI48_RS01220 0.16 -1.9 272,952 + HGI48_RS01220 0.16 +0.4 272,955 + HGI48_RS01220 0.16 -1.4
Or see this region's nucleotide sequence