Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00635

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00630 and HGI48_RS00635 are separated by 11 nucleotidesHGI48_RS00635 and HGI48_RS00640 are separated by 8 nucleotidesHGI48_RS00640 and HGI48_RS00645 are separated by 17 nucleotides HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289 _RS00630 HGI48_RS00635: HGI48_RS00635 - ABC transporter permease subunit, at 150,301 to 151,200 _RS00635 HGI48_RS00640: HGI48_RS00640 - ABC transporter permease subunit, at 151,209 to 152,129 _RS00640 HGI48_RS00645: HGI48_RS00645 - glutathione ABC transporter substrate-binding protein, at 152,147 to 153,703 _RS00645 Position (kb) 150 151 152Strain fitness (log2 ratio) -2 -1 0 1 2 3at 149.460 kb on + strand, within HGI48_RS00630at 149.461 kb on - strand, within HGI48_RS00630at 149.921 kb on - strandat 149.951 kb on - strand, within HGI48_RS00630at 150.052 kb on + strand, within HGI48_RS00630at 150.085 kb on + strand, within HGI48_RS00630at 150.086 kb on - strand, within HGI48_RS00630at 150.086 kb on - strand, within HGI48_RS00630at 150.086 kb on - strand, within HGI48_RS00630at 150.151 kb on + strand, within HGI48_RS00630at 150.151 kb on + strand, within HGI48_RS00630at 150.151 kb on + strand, within HGI48_RS00630at 150.151 kb on + strand, within HGI48_RS00630at 150.151 kb on + strand, within HGI48_RS00630at 150.302 kb on + strandat 150.447 kb on + strand, within HGI48_RS00635at 150.448 kb on - strand, within HGI48_RS00635at 150.448 kb on - strand, within HGI48_RS00635at 150.517 kb on - strand, within HGI48_RS00635at 150.517 kb on - strandat 150.542 kb on + strand, within HGI48_RS00635at 150.542 kb on + strand, within HGI48_RS00635at 150.542 kb on + strand, within HGI48_RS00635at 150.543 kb on - strand, within HGI48_RS00635at 150.576 kb on + strand, within HGI48_RS00635at 150.576 kb on + strand, within HGI48_RS00635at 150.576 kb on + strand, within HGI48_RS00635at 150.577 kb on - strand, within HGI48_RS00635at 150.577 kb on - strand, within HGI48_RS00635at 150.577 kb on - strand, within HGI48_RS00635at 150.632 kb on + strand, within HGI48_RS00635at 150.633 kb on - strandat 150.787 kb on + strand, within HGI48_RS00635at 150.787 kb on + strand, within HGI48_RS00635at 150.787 kb on + strand, within HGI48_RS00635at 150.787 kb on + strand, within HGI48_RS00635at 150.788 kb on - strand, within HGI48_RS00635at 150.788 kb on - strand, within HGI48_RS00635at 150.788 kb on - strand, within HGI48_RS00635at 150.788 kb on - strand, within HGI48_RS00635at 150.788 kb on - strand, within HGI48_RS00635at 150.831 kb on - strand, within HGI48_RS00635at 150.831 kb on - strand, within HGI48_RS00635at 150.834 kb on - strand, within HGI48_RS00635at 150.871 kb on - strand, within HGI48_RS00635at 150.899 kb on + strand, within HGI48_RS00635at 150.900 kb on - strand, within HGI48_RS00635at 150.900 kb on - strand, within HGI48_RS00635at 150.920 kb on + strand, within HGI48_RS00635at 150.920 kb on + strand, within HGI48_RS00635at 150.921 kb on - strand, within HGI48_RS00635at 150.924 kb on + strand, within HGI48_RS00635at 150.925 kb on - strand, within HGI48_RS00635at 150.925 kb on - strand, within HGI48_RS00635at 151.111 kb on - strandat 151.210 kb on + strandat 151.215 kb on + strandat 151.215 kb on + strandat 151.266 kb on - strandat 151.341 kb on + strand, within HGI48_RS00640at 151.341 kb on + strand, within HGI48_RS00640at 151.341 kb on + strand, within HGI48_RS00640at 151.341 kb on + strand, within HGI48_RS00640at 151.341 kb on + strand, within HGI48_RS00640at 151.342 kb on - strand, within HGI48_RS00640at 151.342 kb on - strandat 151.342 kb on - strand, within HGI48_RS00640at 151.520 kb on - strand, within HGI48_RS00640at 151.520 kb on - strand, within HGI48_RS00640at 151.557 kb on - strandat 151.610 kb on + strand, within HGI48_RS00640at 151.610 kb on + strandat 151.610 kb on + strand, within HGI48_RS00640at 151.610 kb on + strand, within HGI48_RS00640at 151.611 kb on - strand, within HGI48_RS00640at 151.611 kb on - strand, within HGI48_RS00640at 151.611 kb on - strand, within HGI48_RS00640at 151.631 kb on - strand, within HGI48_RS00640at 151.844 kb on + strand, within HGI48_RS00640at 151.844 kb on + strand, within HGI48_RS00640at 151.845 kb on - strand, within HGI48_RS00640at 151.845 kb on - strand, within HGI48_RS00640at 151.845 kb on - strand, within HGI48_RS00640at 151.889 kb on - strand, within HGI48_RS00640at 151.889 kb on - strand, within HGI48_RS00640at 151.889 kb on - strand, within HGI48_RS00640at 151.936 kb on + strand, within HGI48_RS00640at 151.937 kb on - strandat 152.052 kb on - strandat 152.118 kb on - strandat 152.118 kb on - strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.119 kb on + strandat 152.120 kb on - strandat 152.120 kb on - strandat 152.120 kb on - strandat 152.120 kb on - strandat 152.120 kb on - strandat 152.120 kb on - strandat 152.149 kb on - strandat 152.149 kb on - strandat 152.196 kb on + strandat 152.197 kb on - strandat 152.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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149,460 + HGI48_RS00630 0.21 -0.6
149,461 - HGI48_RS00630 0.21 -0.5
149,921 - +2.9
149,951 - HGI48_RS00630 0.68 -0.5
150,052 + HGI48_RS00630 0.77 +0.9
150,085 + HGI48_RS00630 0.81 +0.1
150,086 - HGI48_RS00630 0.81 -0.9
150,086 - HGI48_RS00630 0.81 -0.4
150,086 - HGI48_RS00630 0.81 +1.3
150,151 + HGI48_RS00630 0.87 -2.1
150,151 + HGI48_RS00630 0.87 -0.7
150,151 + HGI48_RS00630 0.87 -0.2
150,151 + HGI48_RS00630 0.87 +0.6
150,151 + HGI48_RS00630 0.87 +0.3
150,302 + -0.4
150,447 + HGI48_RS00635 0.16 +0.0
150,448 - HGI48_RS00635 0.16 -0.4
150,448 - HGI48_RS00635 0.16 +1.7
150,517 - HGI48_RS00635 0.24 +1.7
150,517 - -0.7
150,542 + HGI48_RS00635 0.27 +0.7
150,542 + HGI48_RS00635 0.27 -0.6
150,542 + HGI48_RS00635 0.27 +1.1
150,543 - HGI48_RS00635 0.27 +0.5
150,576 + HGI48_RS00635 0.31 -0.4
150,576 + HGI48_RS00635 0.31 +0.3
150,576 + HGI48_RS00635 0.31 +1.2
150,577 - HGI48_RS00635 0.31 +0.3
150,577 - HGI48_RS00635 0.31 -0.4
150,577 - HGI48_RS00635 0.31 +1.2
150,632 + HGI48_RS00635 0.37 -1.7
150,633 - +0.9
150,787 + HGI48_RS00635 0.54 -0.2
150,787 + HGI48_RS00635 0.54 -0.7
150,787 + HGI48_RS00635 0.54 -0.1
150,787 + HGI48_RS00635 0.54 -1.7
150,788 - HGI48_RS00635 0.54 -0.4
150,788 - HGI48_RS00635 0.54 +0.5
150,788 - HGI48_RS00635 0.54 -0.1
150,788 - HGI48_RS00635 0.54 -0.8
150,788 - HGI48_RS00635 0.54 +0.7
150,831 - HGI48_RS00635 0.59 -0.2
150,831 - HGI48_RS00635 0.59 +0.7
150,834 - HGI48_RS00635 0.59 -0.4
150,871 - HGI48_RS00635 0.63 +0.7
150,899 + HGI48_RS00635 0.66 -1.2
150,900 - HGI48_RS00635 0.67 -0.9
150,900 - HGI48_RS00635 0.67 +0.8
150,920 + HGI48_RS00635 0.69 +0.8
150,920 + HGI48_RS00635 0.69 +0.9
150,921 - HGI48_RS00635 0.69 -1.8
150,924 + HGI48_RS00635 0.69 -1.4
150,925 - HGI48_RS00635 0.69 +0.5
150,925 - HGI48_RS00635 0.69 -0.5
151,111 - +0.3
151,210 + +0.5
151,215 + -1.4
151,215 + -0.1
151,266 - +0.5
151,341 + HGI48_RS00640 0.14 +0.1
151,341 + HGI48_RS00640 0.14 -1.8
151,341 + HGI48_RS00640 0.14 -1.7
151,341 + HGI48_RS00640 0.14 -1.9
151,341 + HGI48_RS00640 0.14 +0.3
151,342 - HGI48_RS00640 0.14 -0.8
151,342 - +3.5
151,342 - HGI48_RS00640 0.14 +0.9
151,520 - HGI48_RS00640 0.34 +0.3
151,520 - HGI48_RS00640 0.34 -0.4
151,557 - +0.3
151,610 + HGI48_RS00640 0.44 +0.5
151,610 + +1.3
151,610 + HGI48_RS00640 0.44 +0.5
151,610 + HGI48_RS00640 0.44 -0.1
151,611 - HGI48_RS00640 0.44 +1.9
151,611 - HGI48_RS00640 0.44 +0.1
151,611 - HGI48_RS00640 0.44 +0.6
151,631 - HGI48_RS00640 0.46 -0.5
151,844 + HGI48_RS00640 0.69 +0.2
151,844 + HGI48_RS00640 0.69 -0.3
151,845 - HGI48_RS00640 0.69 -0.1
151,845 - HGI48_RS00640 0.69 +0.4
151,845 - HGI48_RS00640 0.69 -0.4
151,889 - HGI48_RS00640 0.74 -1.1
151,889 - HGI48_RS00640 0.74 -0.5
151,889 - HGI48_RS00640 0.74 -1.7
151,936 + HGI48_RS00640 0.79 -2.1
151,937 - +1.3
152,052 - -0.1
152,118 - +0.9
152,118 - -0.7
152,119 + +1.0
152,119 + -1.1
152,119 + +0.1
152,119 + +0.9
152,119 + -0.9
152,119 + +0.4
152,119 + -0.1
152,119 + -0.7
152,119 + -1.2
152,119 + -1.7
152,119 + +0.9
152,119 + +0.2
152,119 + +2.5
152,120 - +0.3
152,120 - -1.7
152,120 - -1.7
152,120 - +0.6
152,120 - -1.5
152,120 - +0.3
152,149 - +1.3
152,149 - -0.2
152,196 + -0.4
152,197 - -0.3
152,197 - +0.5

Or see this region's nucleotide sequence