Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17680

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,955,265	+				+0.1
3,955,266	-				+0.7
3,955,398	+				-0.2
3,955,444	-				+0.0
3,955,444	-				+0.7
3,955,447	+				+0.1
3,955,447	+				+3.0
3,955,448	-				-0.1
3,955,448	-				-0.4
3,955,476	+				-0.1
3,955,476	+				+0.2
3,955,477	-				-0.2
3,955,477	-				+0.1
3,955,477	-				+0.4
3,955,477	-				+0.9
3,955,477	-				+0.0
3,955,731	+				+1.6
3,955,731	+				-0.3
3,955,731	+				-0.2
3,955,731	+				-0.9
3,955,731	+				+1.6
3,955,732	-				+0.3
3,955,732	-				-0.4
3,955,737	+				+0.5
3,955,738	-				-0.9
3,955,738	-				+1.1
3,955,738	-				-0.3
3,955,738	-				+0.6
3,956,069	+		HGI48_RS17675	0.76	+0.1
3,956,135	-				-0.6
3,956,245	-				-1.7
3,956,394	+				-2.2
3,956,394	+				+1.1
3,956,395	-				-2.2
3,956,395	-				-0.1
3,956,395	-				-1.2
3,956,548	+				+0.1
3,956,549	-				-1.2
3,956,563	+				-0.2
3,956,648	+				-0.3
3,956,681	-		HGI48_RS17680	0.11	-1.5
3,956,861	+		HGI48_RS17680	0.15	-0.3
3,956,861	+		HGI48_RS17680	0.15	+2.7
3,956,861	+		HGI48_RS17680	0.15	-1.4
3,956,861	+		HGI48_RS17680	0.15	-1.4
3,956,861	+		HGI48_RS17680	0.15	-2.2
3,956,861	+		HGI48_RS17680	0.15	+1.7
3,956,862	-		HGI48_RS17680	0.15	+0.3
3,956,862	-		HGI48_RS17680	0.15	+0.1
3,956,862	-		HGI48_RS17680	0.15	-1.5
3,956,862	-		HGI48_RS17680	0.15	+0.3
3,956,862	-		HGI48_RS17680	0.15	+0.1
3,956,862	-		HGI48_RS17680	0.15	+0.7
3,956,862	-		HGI48_RS17680	0.15	+1.3
3,956,862	-		HGI48_RS17680	0.15	-0.9
3,956,974	+		HGI48_RS17680	0.18	+0.4
3,956,974	+		HGI48_RS17680	0.18	+0.1
3,956,975	-				+0.6
3,956,975	-		HGI48_RS17680	0.18	-0.2
3,956,975	-		HGI48_RS17680	0.18	+0.5
3,956,975	-		HGI48_RS17680	0.18	+0.7
3,956,987	+		HGI48_RS17680	0.18	-0.4
3,956,988	-				+0.1
3,956,988	-				+2.1
3,956,993	+		HGI48_RS17680	0.18	+0.4
3,956,993	+		HGI48_RS17680	0.18	-0.7
3,956,993	+		HGI48_RS17680	0.18	-0.2
3,956,994	-		HGI48_RS17680	0.18	+0.4
3,956,994	-		HGI48_RS17680	0.18	-0.7
3,956,994	-		HGI48_RS17680	0.18	-0.4
3,957,049	+		HGI48_RS17680	0.20	-1.4
3,957,049	+		HGI48_RS17680	0.20	+0.7
3,957,049	+				+2.6
3,957,049	+		HGI48_RS17680	0.20	+0.6
3,957,049	+		HGI48_RS17680	0.20	-1.1
3,957,049	+		HGI48_RS17680	0.20	-1.7
3,957,050	-		HGI48_RS17680	0.20	-0.4
3,957,050	-		HGI48_RS17680	0.20	+0.8
3,957,053	-		HGI48_RS17680	0.20	-1.0
3,957,053	-		HGI48_RS17680	0.20	+2.1
3,957,206	-		HGI48_RS17680	0.24	-1.2
3,957,256	+		HGI48_RS17680	0.25	-2.3
3,957,256	+		HGI48_RS17680	0.25	+0.1
3,957,256	+				+0.6
3,957,256	+		HGI48_RS17680	0.25	+0.6
3,957,257	-		HGI48_RS17680	0.25	-0.0
3,957,257	-		HGI48_RS17680	0.25	+1.6
3,957,257	-		HGI48_RS17680	0.25	+0.3
3,957,464	-		HGI48_RS17680	0.30	-1.2
3,957,745	+		HGI48_RS17680	0.37	-0.3
3,957,745	+		HGI48_RS17680	0.37	-0.6
3,957,745	+		HGI48_RS17680	0.37	+1.1
3,957,746	-		HGI48_RS17680	0.37	+0.8
3,957,746	-				+1.1
3,957,746	-		HGI48_RS17680	0.37	+0.8
3,957,751	+		HGI48_RS17680	0.37	-1.4
3,957,751	+		HGI48_RS17680	0.37	-2.0
3,957,751	+		HGI48_RS17680	0.37	-0.2
3,957,751	+		HGI48_RS17680	0.37	-1.2
3,957,752	-		HGI48_RS17680	0.37	+0.1
3,957,752	-		HGI48_RS17680	0.37	-1.2
3,957,987	+		HGI48_RS17680	0.43	-2.0
3,957,987	+		HGI48_RS17680	0.43	+1.5
3,958,038	+		HGI48_RS17680	0.44	-1.2
3,958,093	-		HGI48_RS17680	0.45	-2.0
3,958,213	+		HGI48_RS17680	0.48	-0.7
3,958,290	-		HGI48_RS17680	0.50	-1.0
3,958,290	-		HGI48_RS17680	0.50	+1.0
3,958,290	-		HGI48_RS17680	0.50	+0.7
3,958,290	-		HGI48_RS17680	0.50	+0.7
3,958,290	-		HGI48_RS17680	0.50	+0.3
3,958,290	-		HGI48_RS17680	0.50	-2.0
3,958,330	+		HGI48_RS17680	0.51	+0.8
3,958,330	+		HGI48_RS17680	0.51	+0.7
3,958,492	+		HGI48_RS17680	0.55	-1.2
3,958,493	-		HGI48_RS17680	0.55	+1.1
3,958,493	-		HGI48_RS17680	0.55	-1.2
3,958,834	+		HGI48_RS17680	0.63	-0.0
3,958,834	+		HGI48_RS17680	0.63	-1.1
3,958,834	+		HGI48_RS17680	0.63	-1.2
3,958,835	-		HGI48_RS17680	0.63	+0.3
3,958,835	-				-0.4
3,958,835	-		HGI48_RS17680	0.63	+0.8
3,958,835	-		HGI48_RS17680	0.63	-0.9
3,958,836	+		HGI48_RS17680	0.63	+0.5
3,958,836	+				+1.1
3,958,837	-		HGI48_RS17680	0.63	-0.7
3,959,079	-		HGI48_RS17680	0.69	+0.1
3,959,152	+		HGI48_RS17680	0.71	+0.4
3,959,153	-		HGI48_RS17680	0.71	-0.9
3,959,153	-		HGI48_RS17680	0.71	-0.2
3,959,177	+		HGI48_RS17680	0.72	+1.1
3,959,213	-				+1.1
3,959,221	-				-0.4
3,959,819	+		HGI48_RS17680	0.87	+0.8
3,959,839	+				+2.2
3,959,863	-		HGI48_RS17680	0.89	-0.4
3,959,932	+				-1.2
3,959,933	-				-0.1
3,959,933	-				-1.8
3,959,933	-				-0.1
3,959,933	-				+0.2
3,960,025	+				-0.4
3,960,025	+				-0.2
3,960,025	+				+0.6
3,960,025	+				+0.6
3,960,026	-				+0.8
3,960,026	-				-1.2
3,960,210	+				-0.2
3,960,210	+				+0.1
3,960,210	+				-0.2
3,960,211	-				+1.2
3,960,211	-				-1.9
3,960,211	-				+1.6
3,960,211	-				+1.8
3,960,213	+				+2.2
3,960,214	-				+1.2
3,960,405	+				-2.0
3,960,405	+				-0.4
3,960,405	+				-0.8
3,960,405	+				-0.3
3,960,405	+				-0.1
3,960,405	+				+0.7
3,960,405	+				+0.2
3,960,405	+				+3.3
3,960,405	+				-0.0
3,960,405	+				-0.7
3,960,405	+				-1.4
3,960,405	+				+0.8
3,960,405	+				+0.7
3,960,406	-				-0.8
3,960,406	-				-0.0
3,960,406	-				+0.6
3,960,406	-				+0.2
3,960,406	-				+0.2
3,960,406	-				+2.0
3,960,406	-				+0.7
3,960,406	-				-0.1
3,960,445	+				+0.6
3,960,446	-				-0.8
3,960,507	+		HGI48_RS17685	0.11	+1.5
3,960,508	-		HGI48_RS17685	0.12	-0.4
3,960,531	+		HGI48_RS17685	0.14	-0.8
3,960,963	+		HGI48_RS17685	0.67	+0.3
3,960,964	-		HGI48_RS17685	0.67	+1.2
3,961,033	+		HGI48_RS17685	0.75	-2.2
3,961,034	-		HGI48_RS17685	0.75	-0.4
3,961,034	-				-0.4
3,961,036	+		HGI48_RS17685	0.75	+1.2
3,961,037	-		HGI48_RS17685	0.75	-0.3
3,961,201	+				-2.4
3,961,201	+				-1.2
3,961,201	+				-1.2
3,961,201	+				+0.1
3,961,201	+				-0.8
3,961,201	+				+1.9
3,961,202	-				-0.1
3,961,202	-				-0.7
3,961,202	-				+0.6
3,961,202	-				+0.3
3,961,202	-				+1.9
3,961,202	-				+0.6
3,961,202	-				+0.2
3,961,202	-				+0.0