Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14270

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS14260 and HGI48_RS14265 overlap by 4 nucleotidesHGI48_RS14265 and HGI48_RS14270 overlap by 4 nucleotidesHGI48_RS14270 and HGI48_RS14275 are separated by 10 nucleotidesHGI48_RS14275 and HGI48_RS14280 are separated by 16 nucleotides HGI48_RS14260: HGI48_RS14260 - NADH-quinone oxidoreductase subunit L, at 3,202,430 to 3,204,280 _RS14260 HGI48_RS14265: HGI48_RS14265 - NADH-quinone oxidoreductase subunit NuoK, at 3,204,277 to 3,204,579 _RS14265 HGI48_RS14270: HGI48_RS14270 - NADH-quinone oxidoreductase subunit J, at 3,204,576 to 3,205,127 _RS14270 HGI48_RS14275: HGI48_RS14275 - NADH-quinone oxidoreductase subunit NuoI, at 3,205,138 to 3,205,680 _RS14275 HGI48_RS14280: HGI48_RS14280 - NADH-quinone oxidoreductase subunit NuoH, at 3,205,697 to 3,206,671 _RS14280 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3203.796 kb on + strand, within HGI48_RS14260at 3203.797 kb on - strand, within HGI48_RS14260at 3203.817 kb on + strand, within HGI48_RS14260at 3204.307 kb on - strandat 3204.395 kb on + strand, within HGI48_RS14265at 3204.718 kb on + strand, within HGI48_RS14270at 3204.719 kb on - strand, within HGI48_RS14270at 3205.042 kb on - strand, within HGI48_RS14270at 3205.686 kb on - strandat 3205.686 kb on - strandat 3205.947 kb on + strand, within HGI48_RS14280at 3205.948 kb on - strand, within HGI48_RS14280at 3206.119 kb on + strand, within HGI48_RS14280at 3206.120 kb on - strand, within HGI48_RS14280

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,203,796 + HGI48_RS14260 0.74 -1.9
3,203,797 - HGI48_RS14260 0.74 -2.0
3,203,817 + HGI48_RS14260 0.75 -1.7
3,204,307 - -1.3
3,204,395 + HGI48_RS14265 0.39 +0.1
3,204,718 + HGI48_RS14270 0.26 -2.9
3,204,719 - HGI48_RS14270 0.26 -1.7
3,205,042 - HGI48_RS14270 0.84 -0.3
3,205,686 - +2.4
3,205,686 - -1.5
3,205,947 + HGI48_RS14280 0.26 -1.5
3,205,948 - HGI48_RS14280 0.26 -1.8
3,206,119 + HGI48_RS14280 0.43 -1.1
3,206,120 - HGI48_RS14280 0.43 +0.0

Or see this region's nucleotide sequence