Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11555

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,515,767	+		HGI48_RS11550	0.46	+0.4
2,515,849	+		HGI48_RS11550	0.52	+1.0
2,515,850	-		HGI48_RS11550	0.52	+0.2
2,515,883	-		HGI48_RS11550	0.54	+0.2
2,515,883	-		HGI48_RS11550	0.54	+0.4
2,515,883	-		HGI48_RS11550	0.54	-0.9
2,515,883	-				-0.9
2,515,883	-				-0.9
2,516,049	-		HGI48_RS11550	0.66	-0.4
2,516,049	-		HGI48_RS11550	0.66	-0.7
2,516,100	+		HGI48_RS11550	0.69	-0.4
2,516,100	+		HGI48_RS11550	0.69	-0.4
2,516,100	+		HGI48_RS11550	0.69	+0.2
2,516,100	+		HGI48_RS11550	0.69	+0.1
2,516,101	-		HGI48_RS11550	0.69	+0.8
2,516,146	+		HGI48_RS11550	0.72	-0.5
2,516,206	+		HGI48_RS11550	0.76	-1.1
2,516,228	-		HGI48_RS11550	0.78	+0.3
2,516,228	-		HGI48_RS11550	0.78	-2.7
2,516,246	-		HGI48_RS11550	0.79	-0.1
2,516,263	+		HGI48_RS11550	0.80	+1.1
2,516,264	-		HGI48_RS11550	0.80	+0.1
2,516,264	-		HGI48_RS11550	0.80	+0.4
2,516,264	-		HGI48_RS11550	0.80	+0.1
2,516,404	-				-0.4
2,516,404	-		HGI48_RS11550	0.90	-0.6
2,516,563	-				-0.1
2,516,563	-				-0.6
2,516,565	+				+0.4
2,516,565	+				-0.9
2,516,580	+				+0.6
2,516,609	+				+0.8
2,516,609	+				+1.1
2,516,680	+				+0.2
2,516,681	-				-0.3
2,516,710	+				-1.5
2,516,716	+				+0.8
2,516,716	+				+0.2
2,516,716	+				+0.5
2,516,717	-				-1.2
2,516,717	-				+0.0
2,516,717	-				-0.8
2,516,722	+				+0.1
2,516,723	-				+0.8
2,516,723	-				-0.7
2,516,723	-				-0.2
2,516,723	-				-1.2
2,516,754	+				-0.7
2,516,762	+				+2.6
2,516,762	+				+2.1
2,516,958	+		HGI48_RS11555	0.19	+0.6
2,516,958	+		HGI48_RS11555	0.19	-1.9
2,516,958	+		HGI48_RS11555	0.19	+0.6
2,517,132	+		HGI48_RS11555	0.34	-1.2
2,517,133	-				+1.6
2,517,139	+		HGI48_RS11555	0.35	-2.2
2,517,139	+				+3.0
2,517,139	+		HGI48_RS11555	0.35	-0.2
2,517,140	-		HGI48_RS11555	0.35	+0.2
2,517,140	-		HGI48_RS11555	0.35	-1.5
2,517,140	-		HGI48_RS11555	0.35	-2.7
2,517,140	-		HGI48_RS11555	0.35	-0.1
2,517,140	-		HGI48_RS11555	0.35	+0.7
2,517,143	+		HGI48_RS11555	0.35	-0.1
2,517,285	+		HGI48_RS11555	0.48	-0.2
2,517,286	-		HGI48_RS11555	0.48	-0.6
2,517,286	-		HGI48_RS11555	0.48	-1.7
2,517,287	+		HGI48_RS11555	0.48	-0.9
2,517,288	-				+0.6
2,517,288	-		HGI48_RS11555	0.48	-0.9
2,517,316	-		HGI48_RS11555	0.51	-0.0
2,517,332	+		HGI48_RS11555	0.52	-0.9
2,517,332	+		HGI48_RS11555	0.52	-1.2
2,517,333	-		HGI48_RS11555	0.52	+0.9
2,517,340	-		HGI48_RS11555	0.53	-0.4
2,517,397	-		HGI48_RS11555	0.58	-0.6
2,517,430	-		HGI48_RS11555	0.61	-1.1
2,517,430	-		HGI48_RS11555	0.61	-1.5
2,517,430	-		HGI48_RS11555	0.61	-0.5
2,517,472	+				+0.1
2,517,473	-		HGI48_RS11555	0.65	-1.1
2,517,473	-		HGI48_RS11555	0.65	-0.9
2,517,496	+				-0.9
2,517,496	+		HGI48_RS11555	0.67	+0.1
2,517,496	+				+0.1
2,517,496	+		HGI48_RS11555	0.67	-1.3
2,517,496	+		HGI48_RS11555	0.67	-0.4
2,517,497	-		HGI48_RS11555	0.67	-0.4
2,517,497	-		HGI48_RS11555	0.67	+0.1
2,517,527	+		HGI48_RS11555	0.69	-0.9
2,517,528	-		HGI48_RS11555	0.70	-1.4
2,517,528	-		HGI48_RS11555	0.70	-1.4
2,517,682	+		HGI48_RS11555	0.83	+0.3
2,517,682	+		HGI48_RS11555	0.83	-0.3
2,517,682	+		HGI48_RS11555	0.83	-1.0
2,517,682	+		HGI48_RS11555	0.83	-0.0
2,517,683	-		HGI48_RS11555	0.83	-0.4
2,517,683	-		HGI48_RS11555	0.83	+0.6
2,517,683	-		HGI48_RS11555	0.83	+0.5
2,517,683	-		HGI48_RS11555	0.83	-0.5
2,517,762	+				+0.6
2,517,762	+				-1.4
2,517,762	+				-1.9
2,517,762	+				+1.2
2,517,762	+				-1.7
2,517,855	+				+0.1
2,517,856	-				+1.6
2,517,856	-				+0.1
2,517,873	+				-1.4
2,517,873	+				+0.2
2,517,874	-				+0.6
2,517,874	-				-2.4
2,517,891	+				+0.6
2,517,891	+				-1.1
2,517,909	+				-0.5
2,517,910	-				+0.9
2,518,088	+				-0.7
2,518,088	+				+0.4
2,518,139	+		HGI48_RS11560	0.10	-0.5
2,518,140	-		HGI48_RS11560	0.10	+0.1
2,518,153	+		HGI48_RS11560	0.11	-1.3
2,518,153	+		HGI48_RS11560	0.11	+0.1
2,518,154	-		HGI48_RS11560	0.11	-0.7
2,518,244	+		HGI48_RS11560	0.18	-1.2
2,518,245	-		HGI48_RS11560	0.18	+0.4
2,518,283	+		HGI48_RS11560	0.21	+0.7
2,518,283	+		HGI48_RS11560	0.21	-2.0
2,518,283	+		HGI48_RS11560	0.21	-2.2
2,518,284	-		HGI48_RS11560	0.22	+0.3
2,518,287	-		HGI48_RS11560	0.22	+0.1
2,518,294	+		HGI48_RS11560	0.22	-1.2
2,518,321	+		HGI48_RS11560	0.24	-0.5
2,518,321	+		HGI48_RS11560	0.24	+0.7
2,518,321	+		HGI48_RS11560	0.24	+0.2
2,518,322	-		HGI48_RS11560	0.25	-0.3
2,518,322	-		HGI48_RS11560	0.25	+1.4
2,518,324	+		HGI48_RS11560	0.25	-0.8
2,518,324	+		HGI48_RS11560	0.25	-0.2
2,518,324	+		HGI48_RS11560	0.25	-0.1
2,518,325	-				+2.0
2,518,325	-		HGI48_RS11560	0.25	-0.1
2,518,349	+		HGI48_RS11560	0.27	-1.3
2,518,351	+		HGI48_RS11560	0.27	+0.8
2,518,351	+		HGI48_RS11560	0.27	+0.2
2,518,351	+		HGI48_RS11560	0.27	-1.8
2,518,351	+				+0.1
2,518,351	+		HGI48_RS11560	0.27	-1.3
2,518,351	+		HGI48_RS11560	0.27	+0.5
2,518,351	+		HGI48_RS11560	0.27	-0.9
2,518,450	+		HGI48_RS11560	0.35	-1.7
2,518,450	+		HGI48_RS11560	0.35	-0.0
2,518,498	+		HGI48_RS11560	0.38	-0.7
2,518,498	+		HGI48_RS11560	0.38	-1.9
2,518,499	-		HGI48_RS11560	0.38	+1.1
2,518,499	-				+0.1
2,518,510	+		HGI48_RS11560	0.39	-0.7
2,518,510	+		HGI48_RS11560	0.39	-0.2
2,518,614	+		HGI48_RS11560	0.48	+0.3
2,518,614	+				+0.7
2,518,614	+		HGI48_RS11560	0.48	-1.7
2,518,614	+		HGI48_RS11560	0.48	+0.2
2,518,614	+		HGI48_RS11560	0.48	-2.3
2,518,615	-		HGI48_RS11560	0.48	-1.5
2,518,615	-		HGI48_RS11560	0.48	+1.0
2,518,615	-		HGI48_RS11560	0.48	+0.3
2,518,615	-				-0.9
2,518,615	-		HGI48_RS11560	0.48	-0.7
2,518,703	-		HGI48_RS11560	0.55	+1.0
2,518,703	-		HGI48_RS11560	0.55	-0.7
2,518,703	-		HGI48_RS11560	0.55	+0.4
2,518,703	-		HGI48_RS11560	0.55	+0.2