Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06235

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS06225 and HGI48_RS06230 are separated by 157 nucleotidesHGI48_RS06230 and HGI48_RS06235 overlap by 11 nucleotidesHGI48_RS06235 and HGI48_RS06240 overlap by 4 nucleotidesHGI48_RS06240 and HGI48_RS06245 are separated by 15 nucleotides HGI48_RS06225: HGI48_RS06225 - ribosome silencing factor, at 1,322,766 to 1,323,083 _RS06225 HGI48_RS06230: HGI48_RS06230 - nicotinate-nucleotide adenylyltransferase, at 1,323,241 to 1,323,915 _RS06230 HGI48_RS06235: HGI48_RS06235 - DNA polymerase III subunit delta, at 1,323,905 to 1,324,936 _RS06235 HGI48_RS06240: HGI48_RS06240 - LPS assembly lipoprotein LptE, at 1,324,933 to 1,325,487 _RS06240 HGI48_RS06245: HGI48_RS06245 - leucine--tRNA ligase, at 1,325,503 to 1,328,085 _RS06245 Position (kb) 1323 1324 1325Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strandat 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.988 kb on - strand, within HGI48_RS06225at 1323.003 kb on + strand, within HGI48_RS06225at 1323.003 kb on + strand, within HGI48_RS06225at 1323.004 kb on - strand, within HGI48_RS06225at 1323.148 kb on - strandat 1323.203 kb on + strandat 1323.203 kb on + strandat 1323.205 kb on + strandat 1323.216 kb on + strandat 1323.216 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.219 kb on - strandat 1323.229 kb on - strandat 1323.909 kb on - strandat 1323.909 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
1,322,970 - HGI48_RS06225 0.64 +0.7
1,322,970 - HGI48_RS06225 0.64 +0.3
1,322,970 - HGI48_RS06225 0.64 -0.6
1,322,970 - HGI48_RS06225 0.64 +0.7
1,322,970 - HGI48_RS06225 0.64 -0.3
1,322,970 - HGI48_RS06225 0.64 -0.7
1,322,970 - HGI48_RS06225 0.64 +1.1
1,322,970 - HGI48_RS06225 0.64 +1.5
1,322,970 - HGI48_RS06225 0.64 -0.4
1,322,970 - +1.0
1,322,970 - HGI48_RS06225 0.64 -0.5
1,322,970 - HGI48_RS06225 0.64 +0.3
1,322,976 - HGI48_RS06225 0.66 -2.2
1,322,976 - HGI48_RS06225 0.66 +0.0
1,322,976 - HGI48_RS06225 0.66 -1.1
1,322,976 - HGI48_RS06225 0.66 +0.4
1,322,976 - HGI48_RS06225 0.66 -0.8
1,322,976 - HGI48_RS06225 0.66 +1.0
1,322,976 - HGI48_RS06225 0.66 -0.7
1,322,976 - HGI48_RS06225 0.66 +0.4
1,322,976 - HGI48_RS06225 0.66 +0.1
1,322,976 - HGI48_RS06225 0.66 -1.4
1,322,976 - HGI48_RS06225 0.66 -0.3
1,322,976 - HGI48_RS06225 0.66 +1.0
1,322,988 - HGI48_RS06225 0.70 +0.5
1,323,003 + HGI48_RS06225 0.75 +0.2
1,323,003 + HGI48_RS06225 0.75 -0.4
1,323,004 - HGI48_RS06225 0.75 -0.0
1,323,148 - +0.3
1,323,203 + -0.2
1,323,203 + -1.3
1,323,205 + -2.4
1,323,216 + +1.1
1,323,216 + +0.1
1,323,218 + +1.3
1,323,218 + +3.6
1,323,218 + -0.6
1,323,218 + +0.0
1,323,218 + -0.2
1,323,218 + +0.4
1,323,219 - +1.2
1,323,229 - -0.8
1,323,909 - +0.7
1,323,909 - -0.1

Or see this region's nucleotide sequence