Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04235 and HGI48_RS04240 are separated by 919 nucleotides HGI48_RS04240 and HGI48_RS04245 are separated by 36 nucleotides HGI48_RS04245 and HGI48_RS04250 are separated by 362 nucleotides
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
HGI48_RS04245: HGI48_RS04245 - DUF4755 domain-containing protein, at 893,677 to 894,171
_RS04245
HGI48_RS04250: HGI48_RS04250 - MobA/MobL family protein, at 894,534 to 895,835
_RS04250
Position (kb) 893
894 Strain fitness (log2 ratio) -2
-1
0
1 at 892.352 kb on - strand at 892.506 kb on - strand at 892.793 kb on + strand at 892.810 kb on + strand at 892.868 kb on + strand at 892.919 kb on - strand at 893.001 kb on + strand at 893.138 kb on - strand at 893.242 kb on + strand at 893.310 kb on + strand, within HGI48_RS04240 at 893.313 kb on - strand, within HGI48_RS04240 at 893.472 kb on + strand, within HGI48_RS04240 at 893.892 kb on + strand, within HGI48_RS04245 at 893.983 kb on + strand, within HGI48_RS04245 at 893.997 kb on + strand, within HGI48_RS04245 at 894.052 kb on + strand, within HGI48_RS04245 at 894.101 kb on + strand, within HGI48_RS04245 at 894.208 kb on + strand at 894.220 kb on + strand at 894.221 kb on - strand at 894.221 kb on - strand at 894.348 kb on - strand at 894.432 kb on - strand at 894.535 kb on + strand at 894.568 kb on + strand at 894.569 kb on - strand at 894.569 kb on - strand at 894.588 kb on - strand at 894.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 892,352 - -0.2 892,506 - -0.8 892,793 + -1.6 892,810 + +0.7 892,868 + +0.7 892,919 - -0.6 893,001 + +1.4 893,138 - +1.0 893,242 + -1.1 893,310 + HGI48_RS04240 0.12 -1.3 893,313 - HGI48_RS04240 0.13 -1.8 893,472 + HGI48_RS04240 0.55 -1.1 893,892 + HGI48_RS04245 0.43 +0.4 893,983 + HGI48_RS04245 0.62 -1.7 893,997 + HGI48_RS04245 0.65 +1.0 894,052 + HGI48_RS04245 0.76 -0.8 894,101 + HGI48_RS04245 0.86 +0.6 894,208 + -1.0 894,220 + -0.0 894,221 - +1.2 894,221 - -0.4 894,348 - -0.6 894,432 - -1.8 894,535 + -0.5 894,568 + -0.6 894,569 - +1.7 894,569 - +0.3 894,588 - +0.7 894,636 - -0.3
Or see this region's nucleotide sequence