Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02500 and HGI48_RS02505 are separated by 108 nucleotides HGI48_RS02505 and HGI48_RS02510 are separated by 79 nucleotides HGI48_RS02510 and HGI48_RS02515 are separated by 163 nucleotides
HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751
_RS02500
HGI48_RS02505: HGI48_RS02505 - FAD-dependent urate hydroxylase HpxO, at 540,860 to 542,014
_RS02505
HGI48_RS02510: HGI48_RS02510 - GntR family transcriptional regulator, at 542,094 to 542,792
_RS02510
HGI48_RS02515: HGI48_RS02515 - DUF2848 domain-containing protein, at 542,956 to 543,648
_RS02515
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 539.913 kb on + strand, within HGI48_RS02500 at 539.972 kb on + strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand at 540.021 kb on - strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand at 540.024 kb on + strand at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.025 kb on - strand at 540.025 kb on - strand, within HGI48_RS02500 at 540.059 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.518 kb on - strand, within HGI48_RS02500 at 540.637 kb on + strand at 540.638 kb on - strand, within HGI48_RS02500 at 540.638 kb on - strand, within HGI48_RS02500 at 540.749 kb on + strand at 540.749 kb on + strand at 540.750 kb on - strand at 540.763 kb on + strand at 540.764 kb on - strand at 540.764 kb on - strand at 540.764 kb on - strand at 540.764 kb on - strand at 540.876 kb on + strand at 540.877 kb on - strand at 540.877 kb on - strand at 540.877 kb on - strand at 540.877 kb on - strand at 541.076 kb on + strand, within HGI48_RS02505 at 541.114 kb on + strand, within HGI48_RS02505 at 541.176 kb on + strand, within HGI48_RS02505 at 541.176 kb on + strand, within HGI48_RS02505 at 541.234 kb on + strand, within HGI48_RS02505 at 541.234 kb on + strand, within HGI48_RS02505 at 541.234 kb on + strand, within HGI48_RS02505 at 541.235 kb on - strand, within HGI48_RS02505 at 541.276 kb on + strand, within HGI48_RS02505 at 541.346 kb on + strand, within HGI48_RS02505 at 541.346 kb on + strand, within HGI48_RS02505 at 541.347 kb on - strand, within HGI48_RS02505 at 541.385 kb on + strand, within HGI48_RS02505 at 541.505 kb on + strand, within HGI48_RS02505 at 541.505 kb on + strand, within HGI48_RS02505 at 541.506 kb on - strand, within HGI48_RS02505 at 541.506 kb on - strand at 541.506 kb on - strand at 541.506 kb on - strand, within HGI48_RS02505 at 541.580 kb on + strand, within HGI48_RS02505 at 541.581 kb on - strand, within HGI48_RS02505 at 541.597 kb on + strand, within HGI48_RS02505 at 541.598 kb on - strand, within HGI48_RS02505 at 541.598 kb on - strand, within HGI48_RS02505 at 541.617 kb on + strand, within HGI48_RS02505 at 541.617 kb on + strand at 541.617 kb on + strand, within HGI48_RS02505 at 541.618 kb on - strand, within HGI48_RS02505 at 541.729 kb on + strand, within HGI48_RS02505 at 541.730 kb on - strand, within HGI48_RS02505 at 541.832 kb on + strand, within HGI48_RS02505 at 541.832 kb on + strand, within HGI48_RS02505 at 541.832 kb on + strand, within HGI48_RS02505 at 541.833 kb on - strand, within HGI48_RS02505 at 542.013 kb on - strand at 542.130 kb on - strand at 542.163 kb on - strand at 542.297 kb on + strand, within HGI48_RS02510 at 542.297 kb on + strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.360 kb on + strand, within HGI48_RS02510 at 542.360 kb on + strand at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.460 kb on + strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.461 kb on - strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.496 kb on + strand, within HGI48_RS02510 at 542.496 kb on + strand at 542.538 kb on - strand, within HGI48_RS02510 at 542.538 kb on - strand, within HGI48_RS02510 at 542.567 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand at 542.613 kb on + strand, within HGI48_RS02510 at 542.645 kb on - strand, within HGI48_RS02510 at 542.658 kb on - strand, within HGI48_RS02510 at 542.660 kb on - strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand at 542.790 kb on + strand at 542.790 kb on + strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.792 kb on + strand at 542.793 kb on - strand at 542.804 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.833 kb on - strand at 542.833 kb on - strand at 542.845 kb on + strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.861 kb on - strand at 542.941 kb on - strand at 542.955 kb on + strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 539,913 + HGI48_RS02500 0.18 -0.1 539,972 + HGI48_RS02500 0.24 -1.2 539,973 - HGI48_RS02500 0.24 -1.6 539,973 - HGI48_RS02500 0.24 -1.1 539,973 - -0.5 540,021 - HGI48_RS02500 0.29 -0.9 540,024 + HGI48_RS02500 0.29 +0.4 540,024 + +1.1 540,024 + +1.1 540,024 + HGI48_RS02500 0.29 +0.4 540,024 + HGI48_RS02500 0.29 -0.5 540,025 - -0.5 540,025 - HGI48_RS02500 0.29 -0.5 540,059 - HGI48_RS02500 0.32 -0.1 540,083 - HGI48_RS02500 0.35 -0.3 540,083 - HGI48_RS02500 0.35 +1.3 540,194 + HGI48_RS02500 0.45 +0.0 540,194 + HGI48_RS02500 0.45 +0.4 540,194 + HGI48_RS02500 0.45 -0.7 540,194 + HGI48_RS02500 0.45 -0.6 540,195 - HGI48_RS02500 0.46 -1.5 540,195 - HGI48_RS02500 0.46 +1.9 540,350 + HGI48_RS02500 0.61 +0.7 540,350 + HGI48_RS02500 0.61 -1.6 540,351 - HGI48_RS02500 0.61 -0.5 540,351 - HGI48_RS02500 0.61 +0.6 540,351 - HGI48_RS02500 0.61 -1.6 540,351 - HGI48_RS02500 0.61 -0.2 540,518 - HGI48_RS02500 0.77 +0.5 540,637 + -0.5 540,638 - HGI48_RS02500 0.89 +0.6 540,638 - HGI48_RS02500 0.89 -1.5 540,749 + -1.2 540,749 + -2.3 540,750 - -1.7 540,763 + +0.3 540,764 - -0.7 540,764 - +1.1 540,764 - +0.4 540,764 - -2.2 540,876 + +1.1 540,877 - +0.4 540,877 - +1.7 540,877 - -0.9 540,877 - -0.9 541,076 + HGI48_RS02505 0.19 -0.3 541,114 + HGI48_RS02505 0.22 -1.5 541,176 + HGI48_RS02505 0.27 -2.6 541,176 + HGI48_RS02505 0.27 -0.0 541,234 + HGI48_RS02505 0.32 +0.9 541,234 + HGI48_RS02505 0.32 -0.4 541,234 + HGI48_RS02505 0.32 +1.1 541,235 - HGI48_RS02505 0.32 -0.2 541,276 + HGI48_RS02505 0.36 -0.9 541,346 + HGI48_RS02505 0.42 -0.0 541,346 + HGI48_RS02505 0.42 +0.8 541,347 - HGI48_RS02505 0.42 -1.2 541,385 + HGI48_RS02505 0.45 -1.0 541,505 + HGI48_RS02505 0.56 -0.9 541,505 + HGI48_RS02505 0.56 -1.9 541,506 - HGI48_RS02505 0.56 -1.6 541,506 - -0.5 541,506 - +1.1 541,506 - HGI48_RS02505 0.56 +0.1 541,580 + HGI48_RS02505 0.62 +1.0 541,581 - HGI48_RS02505 0.62 -3.0 541,597 + HGI48_RS02505 0.64 +0.9 541,598 - HGI48_RS02505 0.64 -0.9 541,598 - HGI48_RS02505 0.64 -0.6 541,617 + HGI48_RS02505 0.66 +2.3 541,617 + -0.5 541,617 + HGI48_RS02505 0.66 +0.1 541,618 - HGI48_RS02505 0.66 -0.1 541,729 + HGI48_RS02505 0.75 -0.2 541,730 - HGI48_RS02505 0.75 -0.5 541,832 + HGI48_RS02505 0.84 +0.4 541,832 + HGI48_RS02505 0.84 -0.8 541,832 + HGI48_RS02505 0.84 +0.1 541,833 - HGI48_RS02505 0.84 -0.0 542,013 - -0.3 542,130 - -1.5 542,163 - +1.4 542,297 + HGI48_RS02510 0.29 +0.9 542,297 + HGI48_RS02510 0.29 +0.4 542,298 - HGI48_RS02510 0.29 +0.2 542,298 - HGI48_RS02510 0.29 -2.0 542,298 - HGI48_RS02510 0.29 +0.4 542,360 + HGI48_RS02510 0.38 -0.9 542,360 + +3.0 542,361 - HGI48_RS02510 0.38 -0.3 542,361 - HGI48_RS02510 0.38 -0.9 542,361 - HGI48_RS02510 0.38 -1.3 542,361 - HGI48_RS02510 0.38 -1.2 542,460 + -0.5 542,461 - HGI48_RS02510 0.53 +1.0 542,461 - -0.5 542,461 - HGI48_RS02510 0.53 +0.1 542,496 + HGI48_RS02510 0.58 +0.4 542,496 + +1.1 542,538 - HGI48_RS02510 0.64 -0.2 542,538 - HGI48_RS02510 0.64 +1.1 542,567 + HGI48_RS02510 0.68 +0.5 542,580 + HGI48_RS02510 0.70 -0.7 542,580 + HGI48_RS02510 0.70 -0.8 542,580 + HGI48_RS02510 0.70 -2.2 542,580 + HGI48_RS02510 0.70 -0.3 542,580 + -0.5 542,581 - HGI48_RS02510 0.70 -2.8 542,581 - HGI48_RS02510 0.70 +0.1 542,581 - -0.5 542,613 + HGI48_RS02510 0.74 +0.7 542,645 - HGI48_RS02510 0.79 +0.5 542,658 - HGI48_RS02510 0.81 +0.9 542,660 - HGI48_RS02510 0.81 +0.1 542,695 + HGI48_RS02510 0.86 -0.1 542,695 + HGI48_RS02510 0.86 -0.9 542,695 + +1.1 542,696 - HGI48_RS02510 0.86 -1.2 542,696 - HGI48_RS02510 0.86 +0.1 542,696 - +1.1 542,790 + +0.7 542,790 + +0.1 542,791 - -0.5 542,791 - +0.4 542,791 - +0.2 542,791 - -1.5 542,791 - +0.2 542,791 - +0.1 542,792 + -0.6 542,793 - +0.1 542,804 + -0.9 542,828 + -0.1 542,828 + -1.5 542,828 + +0.1 542,828 + +0.7 542,829 - +0.2 542,829 - -2.3 542,829 - -0.9 542,829 - -1.9 542,832 + +0.1 542,832 + +1.5 542,832 + -1.5 542,832 + -0.0 542,832 + +0.1 542,832 + +0.5 542,832 + +0.5 542,832 + +0.1 542,832 + -0.2 542,832 + -0.0 542,832 + -1.7 542,833 - +1.1 542,833 - -1.5 542,845 + -0.5 542,846 - -0.5 542,846 - -1.2 542,846 - -2.0 542,849 + +0.0 542,849 + -0.5 542,849 + -0.5 542,849 + -0.2 542,850 - +0.3 542,850 - -0.7 542,850 - +0.1 542,850 - +1.1 542,861 - -0.5 542,941 - -1.2 542,955 + -0.5 542,956 - +0.1 542,956 - +2.2 542,956 - -0.7 542,976 - +1.7
Or see this region's nucleotide sequence