Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01455 and HGI48_RS01460 overlap by 23 nucleotides HGI48_RS01460 and HGI48_RS01465 overlap by 4 nucleotides HGI48_RS01465 and HGI48_RS01470 are separated by 47 nucleotides
HGI48_RS01455: HGI48_RS01455 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 322,899 to 323,477
_RS01455
HGI48_RS01460: HGI48_RS01460 - LPS export ABC transporter periplasmic protein LptC, at 323,455 to 324,024
_RS01460
HGI48_RS01465: HGI48_RS01465 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 324,021 to 324,587
_RS01465
HGI48_RS01470: HGI48_RS01470 - arabinose-5-phosphate isomerase KdsD, at 324,635 to 325,621
_RS01470
Position (kb) 324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 323.489 kb on - strand at 323.615 kb on - strand, within HGI48_RS01460 at 324.054 kb on - strand at 324.054 kb on - strand at 324.054 kb on - strand at 324.072 kb on - strand at 324.072 kb on - strand at 324.072 kb on - strand at 324.072 kb on - strand at 324.072 kb on - strand at 324.072 kb on - strand at 324.072 kb on - strand at 324.125 kb on - strand, within HGI48_RS01465 at 324.125 kb on - strand, within HGI48_RS01465 at 324.125 kb on - strand at 324.125 kb on - strand, within HGI48_RS01465 at 324.125 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.224 kb on - strand, within HGI48_RS01465 at 324.255 kb on - strand, within HGI48_RS01465 at 324.255 kb on - strand, within HGI48_RS01465 at 324.255 kb on - strand, within HGI48_RS01465 at 324.255 kb on - strand, within HGI48_RS01465 at 324.255 kb on - strand, within HGI48_RS01465 at 324.301 kb on + strand, within HGI48_RS01465 at 324.302 kb on - strand, within HGI48_RS01465 at 324.302 kb on - strand, within HGI48_RS01465 at 324.302 kb on - strand, within HGI48_RS01465 at 324.303 kb on + strand at 324.303 kb on + strand, within HGI48_RS01465 at 324.303 kb on + strand, within HGI48_RS01465 at 324.303 kb on + strand, within HGI48_RS01465 at 324.303 kb on + strand, within HGI48_RS01465 at 324.303 kb on + strand at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand, within HGI48_RS01465 at 324.304 kb on - strand at 324.405 kb on - strand, within HGI48_RS01465 at 324.421 kb on - strand, within HGI48_RS01465 at 324.460 kb on + strand, within HGI48_RS01465 at 324.460 kb on + strand, within HGI48_RS01465 at 324.461 kb on - strand, within HGI48_RS01465 at 324.461 kb on - strand, within HGI48_RS01465 at 324.461 kb on - strand, within HGI48_RS01465 at 324.481 kb on - strand, within HGI48_RS01465 at 324.481 kb on - strand, within HGI48_RS01465 at 324.481 kb on - strand, within HGI48_RS01465 at 324.481 kb on - strand at 324.502 kb on - strand, within HGI48_RS01465 at 324.595 kb on + strand at 324.595 kb on + strand at 324.595 kb on + strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.596 kb on - strand at 324.636 kb on + strand at 324.636 kb on + strand at 324.637 kb on - strand at 324.637 kb on - strand at 324.637 kb on - strand at 324.637 kb on - strand at 324.637 kb on - strand at 324.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 323,489 - +0.4 323,615 - HGI48_RS01460 0.28 +0.4 324,054 - -1.6 324,054 - -0.5 324,054 - -0.4 324,072 - -1.1 324,072 - -2.0 324,072 - +0.2 324,072 - +0.5 324,072 - -1.3 324,072 - -0.4 324,072 - -1.4 324,125 - HGI48_RS01465 0.18 -0.4 324,125 - HGI48_RS01465 0.18 -0.1 324,125 - -0.4 324,125 - HGI48_RS01465 0.18 +1.6 324,125 - HGI48_RS01465 0.18 -1.5 324,224 - HGI48_RS01465 0.36 -0.4 324,224 - HGI48_RS01465 0.36 -0.8 324,224 - HGI48_RS01465 0.36 -1.4 324,224 - HGI48_RS01465 0.36 -0.7 324,224 - HGI48_RS01465 0.36 -2.7 324,224 - HGI48_RS01465 0.36 +0.6 324,224 - HGI48_RS01465 0.36 -1.5 324,255 - HGI48_RS01465 0.41 -0.4 324,255 - HGI48_RS01465 0.41 -2.3 324,255 - HGI48_RS01465 0.41 +2.4 324,255 - HGI48_RS01465 0.41 -0.8 324,255 - HGI48_RS01465 0.41 -1.1 324,301 + HGI48_RS01465 0.49 -2.0 324,302 - HGI48_RS01465 0.50 -2.4 324,302 - HGI48_RS01465 0.50 -2.1 324,302 - HGI48_RS01465 0.50 -1.6 324,303 + +2.6 324,303 + HGI48_RS01465 0.50 -1.1 324,303 + HGI48_RS01465 0.50 -0.1 324,303 + HGI48_RS01465 0.50 -1.4 324,303 + HGI48_RS01465 0.50 +0.4 324,303 + -0.4 324,304 - HGI48_RS01465 0.50 -2.4 324,304 - HGI48_RS01465 0.50 -1.3 324,304 - HGI48_RS01465 0.50 -0.5 324,304 - HGI48_RS01465 0.50 +0.6 324,304 - HGI48_RS01465 0.50 -1.1 324,304 - HGI48_RS01465 0.50 -2.0 324,304 - HGI48_RS01465 0.50 +0.2 324,304 - HGI48_RS01465 0.50 -0.9 324,304 - HGI48_RS01465 0.50 -0.4 324,304 - HGI48_RS01465 0.50 -0.4 324,304 - HGI48_RS01465 0.50 -0.5 324,304 - HGI48_RS01465 0.50 -0.1 324,304 - HGI48_RS01465 0.50 -1.2 324,304 - HGI48_RS01465 0.50 -1.8 324,304 - HGI48_RS01465 0.50 +0.2 324,304 - HGI48_RS01465 0.50 -1.1 324,304 - HGI48_RS01465 0.50 -1.6 324,304 - HGI48_RS01465 0.50 -0.1 324,304 - HGI48_RS01465 0.50 -2.1 324,304 - HGI48_RS01465 0.50 +0.0 324,304 - HGI48_RS01465 0.50 -1.1 324,304 - HGI48_RS01465 0.50 -0.3 324,304 - HGI48_RS01465 0.50 +0.8 324,304 - HGI48_RS01465 0.50 -1.6 324,304 - +1.2 324,405 - HGI48_RS01465 0.68 -1.8 324,421 - HGI48_RS01465 0.71 +0.9 324,460 + HGI48_RS01465 0.77 -1.6 324,460 + HGI48_RS01465 0.77 -1.5 324,461 - HGI48_RS01465 0.78 -2.3 324,461 - HGI48_RS01465 0.78 -3.0 324,461 - HGI48_RS01465 0.78 -2.6 324,481 - HGI48_RS01465 0.81 -0.3 324,481 - HGI48_RS01465 0.81 +0.2 324,481 - HGI48_RS01465 0.81 -0.9 324,481 - +0.2 324,502 - HGI48_RS01465 0.85 +0.1 324,595 + -1.4 324,595 + +0.1 324,595 + -0.8 324,596 - -1.1 324,596 - -0.8 324,596 - -0.6 324,596 - +1.8 324,596 - -1.2 324,596 - -0.1 324,596 - -1.4 324,596 - -0.6 324,636 + -1.8 324,636 + +0.8 324,637 - -2.5 324,637 - -1.8 324,637 - +0.2 324,637 - -0.6 324,637 - -0.7 324,637 - -0.1
Or see this region's nucleotide sequence