Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00940

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00930 and HGI48_RS00935 are separated by 31 nucleotidesHGI48_RS00935 and HGI48_RS00940 are separated by 212 nucleotidesHGI48_RS00940 and HGI48_RS00945 are separated by 49 nucleotidesHGI48_RS00945 and HGI48_RS00950 are separated by 96 nucleotides HGI48_RS00930: HGI48_RS00930 - porphobilinogen synthase, at 211,708 to 212,730 _RS00930 HGI48_RS00935: HGI48_RS00935 - transcription/translation regulatory transformer protein RfaH, at 212,762 to 213,250 _RS00935 HGI48_RS00940: HGI48_RS00940 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 213,463 to 214,950 _RS00940 HGI48_RS00945: HGI48_RS00945 - NAD(P)H-flavin reductase, at 215,000 to 215,701 _RS00945 HGI48_RS00950: HGI48_RS00950 - FAD-dependent oxidoreductase, at 215,798 to 217,489 _RS00950 Position (kb) 213 214 215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strandat 212.862 kb on + strandat 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strandat 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.866 kb on + strand, within HGI48_RS00935at 212.866 kb on + strand, within HGI48_RS00935at 212.867 kb on - strand, within HGI48_RS00935at 212.867 kb on - strand, within HGI48_RS00935at 212.904 kb on - strand, within HGI48_RS00935at 212.904 kb on - strand, within HGI48_RS00935at 212.939 kb on - strand, within HGI48_RS00935at 212.939 kb on - strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.060 kb on - strand, within HGI48_RS00935at 213.060 kb on - strand, within HGI48_RS00935at 213.060 kb on - strand, within HGI48_RS00935at 213.060 kb on - strandat 213.060 kb on - strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.091 kb on - strand, within HGI48_RS00935at 213.091 kb on - strand, within HGI48_RS00935at 213.228 kb on + strandat 213.228 kb on + strandat 213.228 kb on + strandat 213.229 kb on - strandat 213.229 kb on - strandat 213.229 kb on - strandat 213.233 kb on + strandat 213.234 kb on - strandat 213.387 kb on + strandat 213.388 kb on - strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.426 kb on - strandat 213.426 kb on - strandat 213.426 kb on - strandat 213.427 kb on + strandat 213.427 kb on + strandat 213.427 kb on + strandat 213.430 kb on + strandat 214.986 kb on + strandat 215.017 kb on + strandat 215.018 kb on - strandat 215.023 kb on - strandat 215.349 kb on - strand, within HGI48_RS00945at 215.349 kb on - strandat 215.352 kb on + strand, within HGI48_RS00945at 215.352 kb on + strand, within HGI48_RS00945at 215.353 kb on - strand, within HGI48_RS00945at 215.353 kb on - strand, within HGI48_RS00945at 215.400 kb on + strand, within HGI48_RS00945at 215.401 kb on - strand, within HGI48_RS00945at 215.438 kb on + strandat 215.595 kb on - strand, within HGI48_RS00945at 215.595 kb on - strand, within HGI48_RS00945at 215.675 kb on + strandat 215.754 kb on - strandat 215.799 kb on + strandat 215.799 kb on + strandat 215.799 kb on + strandat 215.799 kb on + strandat 215.800 kb on - strandat 215.800 kb on - strandat 215.800 kb on - strandat 215.800 kb on - strandat 215.820 kb on + strandat 215.827 kb on + strandat 215.827 kb on + strandat 215.828 kb on - strandat 215.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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212,862 + HGI48_RS00935 0.20 -0.8
212,862 + HGI48_RS00935 0.20 +0.6
212,862 + HGI48_RS00935 0.20 +1.5
212,862 + HGI48_RS00935 0.20 -0.4
212,862 + HGI48_RS00935 0.20 +0.1
212,862 + HGI48_RS00935 0.20 -1.1
212,862 + HGI48_RS00935 0.20 -0.2
212,862 + HGI48_RS00935 0.20 +0.3
212,862 + HGI48_RS00935 0.20 -3.0
212,862 + HGI48_RS00935 0.20 +0.2
212,862 + HGI48_RS00935 0.20 +0.1
212,862 + +0.2
212,862 + -0.4
212,862 + HGI48_RS00935 0.20 -1.0
212,862 + HGI48_RS00935 0.20 +1.5
212,862 + HGI48_RS00935 0.20 +0.9
212,863 - HGI48_RS00935 0.21 +0.2
212,863 - +0.6
212,863 - HGI48_RS00935 0.21 -0.6
212,863 - HGI48_RS00935 0.21 +1.5
212,863 - HGI48_RS00935 0.21 +1.2
212,863 - HGI48_RS00935 0.21 -1.2
212,863 - HGI48_RS00935 0.21 -0.5
212,863 - HGI48_RS00935 0.21 -0.4
212,863 - HGI48_RS00935 0.21 +0.0
212,866 + HGI48_RS00935 0.21 -1.8
212,866 + HGI48_RS00935 0.21 +0.2
212,867 - HGI48_RS00935 0.21 -0.6
212,867 - HGI48_RS00935 0.21 +1.9
212,904 - HGI48_RS00935 0.29 -0.4
212,904 - HGI48_RS00935 0.29 -0.1
212,939 - HGI48_RS00935 0.36 -1.8
212,939 - HGI48_RS00935 0.36 -0.8
213,059 + HGI48_RS00935 0.61 -0.1
213,059 + HGI48_RS00935 0.61 +0.0
213,059 + HGI48_RS00935 0.61 +0.5
213,059 + HGI48_RS00935 0.61 -0.5
213,059 + HGI48_RS00935 0.61 -0.3
213,059 + HGI48_RS00935 0.61 +1.5
213,059 + HGI48_RS00935 0.61 +0.3
213,059 + HGI48_RS00935 0.61 +0.0
213,059 + HGI48_RS00935 0.61 +0.4
213,059 + HGI48_RS00935 0.61 -0.8
213,060 - HGI48_RS00935 0.61 +0.0
213,060 - HGI48_RS00935 0.61 +2.4
213,060 - HGI48_RS00935 0.61 -0.5
213,060 - -0.4
213,060 - HGI48_RS00935 0.61 -0.6
213,090 + HGI48_RS00935 0.67 -0.6
213,090 + HGI48_RS00935 0.67 +0.7
213,090 + HGI48_RS00935 0.67 +1.9
213,090 + HGI48_RS00935 0.67 +1.4
213,090 + HGI48_RS00935 0.67 +0.2
213,090 + HGI48_RS00935 0.67 -0.1
213,090 + HGI48_RS00935 0.67 -1.4
213,091 - HGI48_RS00935 0.67 -1.6
213,091 - HGI48_RS00935 0.67 -0.4
213,228 + -0.4
213,228 + +0.3
213,228 + -0.7
213,229 - -0.9
213,229 - -0.1
213,229 - -1.6
213,233 + -0.8
213,234 - +1.0
213,387 + +0.2
213,388 - +0.8
213,425 + +1.0
213,425 + +0.5
213,425 + +0.2
213,425 + -0.4
213,425 + -0.8
213,426 - +0.2
213,426 - +1.5
213,426 - +2.5
213,427 + +0.4
213,427 + -0.8
213,427 + -0.9
213,430 + -0.1
214,986 + -0.8
215,017 + -2.1
215,018 - +1.2
215,023 - +0.2
215,349 - HGI48_RS00945 0.50 -0.4
215,349 - -0.4
215,352 + HGI48_RS00945 0.50 -0.6
215,352 + HGI48_RS00945 0.50 -0.9
215,353 - HGI48_RS00945 0.50 -0.4
215,353 - HGI48_RS00945 0.50 -0.6
215,400 + HGI48_RS00945 0.57 +0.2
215,401 - HGI48_RS00945 0.57 -0.4
215,438 + +0.6
215,595 - HGI48_RS00945 0.85 -0.6
215,595 - HGI48_RS00945 0.85 +0.2
215,675 + +2.1
215,754 - -0.2
215,799 + +0.1
215,799 + +0.4
215,799 + +0.9
215,799 + -0.0
215,800 - +1.3
215,800 - -1.4
215,800 - +0.6
215,800 - +1.2
215,820 + -0.1
215,827 + +1.8
215,827 + -0.8
215,828 - -0.1
215,828 - +0.6

Or see this region's nucleotide sequence