Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21535

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,802,845	+		HGI48_RS21525	0.54	-0.3
4,802,845	+		HGI48_RS21525	0.54	-0.3
4,802,845	+		HGI48_RS21525	0.54	+1.2
4,802,846	-				+0.7
4,802,846	-		HGI48_RS21525	0.54	+0.2
4,802,950	+		HGI48_RS21525	0.76	-2.4
4,802,985	+		HGI48_RS21525	0.83	-0.3
4,803,011	+				+1.7
4,803,012	-		HGI48_RS21525	0.89	-0.7
4,803,033	+				-0.1
4,803,034	-				-1.6
4,803,034	-				-1.2
4,803,043	-				-0.8
4,803,043	-				-0.2
4,803,043	-				-0.5
4,803,043	-				+0.8
4,803,043	-				+0.1
4,803,045	+				+0.7
4,803,046	-				-0.8
4,803,046	-				+0.8
4,803,046	-				-0.6
4,803,046	-				+0.4
4,803,080	+				-1.4
4,803,080	+				-0.8
4,803,080	+				+0.5
4,803,081	-				+0.8
4,803,081	-				+0.5
4,803,081	-				+1.8
4,803,081	-				-0.2
4,803,081	-				+0.8
4,803,160	+				+0.2
4,803,161	-		HGI48_RS21530	0.13	+1.2
4,803,293	+		HGI48_RS21530	0.31	-0.1
4,803,294	-				-0.3
4,803,294	-		HGI48_RS21530	0.31	-0.0
4,803,304	+		HGI48_RS21530	0.33	+0.1
4,803,304	+		HGI48_RS21530	0.33	+1.1
4,803,304	+				+0.7
4,803,305	-		HGI48_RS21530	0.33	+1.0
4,803,307	+		HGI48_RS21530	0.33	-1.1
4,803,308	-		HGI48_RS21530	0.33	-1.1
4,803,308	-		HGI48_RS21530	0.33	+1.0
4,803,322	-		HGI48_RS21530	0.35	+1.2
4,803,409	+		HGI48_RS21530	0.47	-0.1
4,803,409	+		HGI48_RS21530	0.47	-0.8
4,803,410	-		HGI48_RS21530	0.47	+0.6
4,803,410	-		HGI48_RS21530	0.47	+0.6
4,803,410	-				+1.2
4,803,465	+		HGI48_RS21530	0.55	-0.8
4,803,465	+				-0.3
4,803,465	+				-0.3
4,803,466	-		HGI48_RS21530	0.55	-0.1
4,803,466	-				-0.3
4,803,466	-				+0.2
4,803,468	+		HGI48_RS21530	0.55	+0.0
4,803,468	+		HGI48_RS21530	0.55	+0.4
4,803,468	+				+1.2
4,803,469	-		HGI48_RS21530	0.55	-0.8
4,803,495	+		HGI48_RS21530	0.59	-0.8
4,803,520	+		HGI48_RS21530	0.62	-1.6
4,803,520	+		HGI48_RS21530	0.62	-1.8
4,803,520	+		HGI48_RS21530	0.62	+0.8
4,803,520	+		HGI48_RS21530	0.62	-0.3
4,803,520	+		HGI48_RS21530	0.62	-0.1
4,803,520	+		HGI48_RS21530	0.62	+0.1
4,803,520	+		HGI48_RS21530	0.62	-1.3
4,803,520	+		HGI48_RS21530	0.62	+0.2
4,803,520	+		HGI48_RS21530	0.62	-0.8
4,803,520	+		HGI48_RS21530	0.62	-0.8
4,803,520	+		HGI48_RS21530	0.62	-0.2
4,803,520	+		HGI48_RS21530	0.62	-0.4
4,803,521	-		HGI48_RS21530	0.62	+0.4
4,803,521	-		HGI48_RS21530	0.62	-0.2
4,803,521	-		HGI48_RS21530	0.62	-0.8
4,803,521	-		HGI48_RS21530	0.62	-0.3
4,803,521	-		HGI48_RS21530	0.62	-0.3
4,803,521	-		HGI48_RS21530	0.62	-1.1
4,803,521	-		HGI48_RS21530	0.62	+0.5
4,803,728	-				-2.1
4,803,751	+				+0.2
4,803,752	-				+0.7
4,803,793	+				+0.2
4,803,793	+				+1.2
4,803,793	+				+0.2
4,803,793	+				-0.8
4,803,793	+				-0.3
4,803,794	-				-1.6
4,803,794	-				-1.6
4,803,794	-				+0.3
4,803,794	-				-1.6
4,803,794	-				-0.3
4,803,794	-				-0.8
4,803,918	+		HGI48_RS21535	0.10	+0.3
4,803,918	+		HGI48_RS21535	0.10	+0.8
4,803,919	-		HGI48_RS21535	0.10	+0.2
4,803,919	-		HGI48_RS21535	0.10	-1.1
4,803,919	-		HGI48_RS21535	0.10	-1.9
4,803,921	-		HGI48_RS21535	0.10	-1.1
4,803,978	+		HGI48_RS21535	0.15	-0.8
4,803,978	+				-0.3
4,803,978	+		HGI48_RS21535	0.15	-1.0
4,803,978	+		HGI48_RS21535	0.15	-1.5
4,803,978	+		HGI48_RS21535	0.15	-2.3
4,803,979	-		HGI48_RS21535	0.15	+0.4
4,803,979	-		HGI48_RS21535	0.15	-0.1
4,803,979	-		HGI48_RS21535	0.15	-1.1
4,803,981	-		HGI48_RS21535	0.15	+0.1
4,803,981	-		HGI48_RS21535	0.15	-0.8
4,803,981	-		HGI48_RS21535	0.15	-1.0
4,804,154	+		HGI48_RS21535	0.29	+0.8
4,804,154	+		HGI48_RS21535	0.29	-0.3
4,804,155	-		HGI48_RS21535	0.29	-1.1
4,804,181	+		HGI48_RS21535	0.31	-1.1
4,804,181	+		HGI48_RS21535	0.31	-1.3
4,804,181	+		HGI48_RS21535	0.31	-0.2
4,804,181	+		HGI48_RS21535	0.31	-0.1
4,804,182	-		HGI48_RS21535	0.31	-1.9
4,804,182	-		HGI48_RS21535	0.31	+0.4
4,804,197	+		HGI48_RS21535	0.33	-1.2
4,804,197	+		HGI48_RS21535	0.33	+0.8
4,804,197	+				-0.3
4,804,197	+				+2.2
4,804,197	+		HGI48_RS21535	0.33	+0.8
4,804,197	+		HGI48_RS21535	0.33	+1.0
4,804,197	+		HGI48_RS21535	0.33	+0.5
4,804,197	+				+0.2
4,804,197	+		HGI48_RS21535	0.33	-0.0
4,804,197	+		HGI48_RS21535	0.33	+0.8
4,804,197	+		HGI48_RS21535	0.33	-0.1
4,804,197	+		HGI48_RS21535	0.33	+0.2
4,804,197	+		HGI48_RS21535	0.33	-0.3
4,804,197	+				-0.3
4,804,197	+		HGI48_RS21535	0.33	-0.2
4,804,198	-		HGI48_RS21535	0.33	+1.2
4,804,198	-		HGI48_RS21535	0.33	+0.7
4,804,198	-		HGI48_RS21535	0.33	+1.6
4,804,198	-		HGI48_RS21535	0.33	+1.4
4,804,198	-		HGI48_RS21535	0.33	-0.3
4,804,198	-		HGI48_RS21535	0.33	-0.7
4,804,198	-		HGI48_RS21535	0.33	-1.3
4,804,198	-		HGI48_RS21535	0.33	-1.9
4,804,198	-				+0.2
4,804,198	-		HGI48_RS21535	0.33	+0.2
4,804,198	-		HGI48_RS21535	0.33	-0.2
4,804,198	-		HGI48_RS21535	0.33	-0.8
4,804,198	-		HGI48_RS21535	0.33	+0.5
4,804,198	-		HGI48_RS21535	0.33	+0.8
4,804,198	-				+3.7
4,804,198	-		HGI48_RS21535	0.33	-1.0
4,804,198	-		HGI48_RS21535	0.33	-0.6
4,804,286	+		HGI48_RS21535	0.40	+0.4
4,804,286	+		HGI48_RS21535	0.40	+0.7
4,804,287	-		HGI48_RS21535	0.40	-2.2
4,804,287	-		HGI48_RS21535	0.40	+0.3
4,804,306	+		HGI48_RS21535	0.42	-1.3
4,804,311	+		HGI48_RS21535	0.42	-0.2
4,804,311	+		HGI48_RS21535	0.42	-0.4
4,804,311	+		HGI48_RS21535	0.42	-1.8
4,804,312	-		HGI48_RS21535	0.42	-0.9
4,804,554	+		HGI48_RS21535	0.62	-0.1
4,804,554	+		HGI48_RS21535	0.62	-0.1
4,804,555	-		HGI48_RS21535	0.62	-2.5
4,804,555	-		HGI48_RS21535	0.62	-0.3
4,804,555	-		HGI48_RS21535	0.62	+0.1
4,804,575	+		HGI48_RS21535	0.63	+0.7
4,804,576	-		HGI48_RS21535	0.63	-1.2
4,804,576	-		HGI48_RS21535	0.63	+1.3
4,804,598	+		HGI48_RS21535	0.65	+0.9
4,804,598	+		HGI48_RS21535	0.65	+1.8
4,804,598	+		HGI48_RS21535	0.65	-0.3
4,804,598	+		HGI48_RS21535	0.65	+0.2
4,804,599	-		HGI48_RS21535	0.65	-1.1
4,804,599	-		HGI48_RS21535	0.65	-1.6
4,804,599	-		HGI48_RS21535	0.65	-0.5
4,804,599	-		HGI48_RS21535	0.65	+0.2
4,804,599	-				+2.2
4,804,599	-		HGI48_RS21535	0.65	-1.1
4,804,599	-		HGI48_RS21535	0.65	-0.0
4,804,599	-		HGI48_RS21535	0.65	+0.2
4,804,634	+		HGI48_RS21535	0.68	+0.9
4,804,634	+		HGI48_RS21535	0.68	+0.6
4,804,634	+		HGI48_RS21535	0.68	+0.5
4,804,634	+				-0.3
4,804,635	-		HGI48_RS21535	0.68	-0.6
4,804,683	+		HGI48_RS21535	0.72	+1.4
4,804,683	+		HGI48_RS21535	0.72	-1.1
4,804,684	-		HGI48_RS21535	0.72	+1.2
4,804,684	-				+0.2
4,804,684	-		HGI48_RS21535	0.72	+0.8
4,804,685	+		HGI48_RS21535	0.72	+1.0
4,804,685	+		HGI48_RS21535	0.72	+1.9
4,804,685	+		HGI48_RS21535	0.72	+0.8
4,804,685	+		HGI48_RS21535	0.72	+0.0
4,804,685	+		HGI48_RS21535	0.72	-0.8
4,804,686	-		HGI48_RS21535	0.72	-1.1
4,804,686	-		HGI48_RS21535	0.72	+1.8
4,804,686	-		HGI48_RS21535	0.72	-1.6
4,804,686	-		HGI48_RS21535	0.72	-0.1
4,804,700	+		HGI48_RS21535	0.74	+0.0
4,804,700	+				+1.2
4,804,788	+		HGI48_RS21535	0.81	+0.3
4,804,788	+		HGI48_RS21535	0.81	-1.1
4,804,788	+		HGI48_RS21535	0.81	+0.4
4,804,789	-		HGI48_RS21535	0.81	+0.5
4,804,789	-		HGI48_RS21535	0.81	-0.0
4,804,789	-		HGI48_RS21535	0.81	+0.7
4,804,789	-		HGI48_RS21535	0.81	+0.7
4,804,789	-		HGI48_RS21535	0.81	-0.6
4,804,917	+				-0.8
4,804,917	+				+0.2
4,804,918	-				-3.3
4,804,918	-				+1.8
4,804,953	+				+0.2
4,804,953	+				-0.7
4,804,953	+				-1.2
4,804,953	+				-1.1
4,804,953	+				-0.1
4,804,953	+				-0.3
4,804,954	-				-0.2
4,804,954	-				+0.1
4,804,954	-				+0.5
4,804,954	-				+2.1
4,804,955	+				+0.6
4,804,955	+				+0.7
4,804,956	-				-0.7
4,804,956	-				+1.0
4,804,964	+				+0.6
4,805,022	+				-1.3
4,805,022	+				+0.9
4,805,023	-				-2.1
4,805,062	+				+0.6
4,805,072	+				-0.9
4,805,073	-				+2.4
4,805,073	-				+0.0
4,805,080	+				+2.8
4,805,080	+				+0.1
4,805,080	+				-1.3
4,805,080	+				-0.2
4,805,080	+				+0.2
4,805,080	+				+1.6
4,805,080	+				+0.4
4,805,080	+				+0.9
4,805,080	+				+0.1
4,805,081	-				+0.2
4,805,081	-				-1.6
4,805,081	-				+0.1
4,805,081	-				-0.6
4,805,122	+				+0.4
4,805,122	+				-0.1
4,805,122	+				+1.5
4,805,122	+				+1.0
4,805,123	-				-1.1
4,805,123	-				+0.2
4,805,123	-				-1.1
4,805,183	+				+0.5
4,805,196	-				+0.6
4,805,234	-				+0.1
4,805,234	-				+1.0
4,805,385	-		HGI48_RS21540	0.13	-0.8
4,805,435	-		HGI48_RS21540	0.15	+0.9
4,805,435	-		HGI48_RS21540	0.15	-1.8
4,805,530	+		HGI48_RS21540	0.19	+1.4
4,805,530	+		HGI48_RS21540	0.19	+1.7
4,805,530	+		HGI48_RS21540	0.19	-1.2
4,805,530	+		HGI48_RS21540	0.19	+0.5
4,805,530	+		HGI48_RS21540	0.19	-0.3
4,805,531	-		HGI48_RS21540	0.20	-0.1
4,805,531	-		HGI48_RS21540	0.20	-0.8
4,805,531	-		HGI48_RS21540	0.20	-1.3
4,805,531	-		HGI48_RS21540	0.20	-0.8
4,805,629	+		HGI48_RS21540	0.24	-0.1
4,805,629	+		HGI48_RS21540	0.24	+0.5
4,805,630	-		HGI48_RS21540	0.24	-0.6
4,805,630	-		HGI48_RS21540	0.24	-1.1
4,805,630	-		HGI48_RS21540	0.24	-1.5
4,805,743	+		HGI48_RS21540	0.29	+0.2
4,805,743	+		HGI48_RS21540	0.29	+0.1
4,805,889	+		HGI48_RS21540	0.35	+1.0
4,805,909	+		HGI48_RS21540	0.36	+0.2
4,805,910	-		HGI48_RS21540	0.36	-1.1
4,805,914	+		HGI48_RS21540	0.36	-0.5
4,805,914	+				+2.6
4,805,914	+		HGI48_RS21540	0.36	+0.4
4,805,914	+		HGI48_RS21540	0.36	-0.8
4,805,915	-		HGI48_RS21540	0.36	-0.8
4,805,915	-		HGI48_RS21540	0.36	-1.9
4,805,915	-		HGI48_RS21540	0.36	+1.7
4,805,915	-		HGI48_RS21540	0.36	+0.5