Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20705

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,626,921	-		HGI48_RS20695	0.58	+0.7
4,626,929	-		HGI48_RS20695	0.59	+0.2
4,627,049	-		HGI48_RS20695	0.79	+0.4
4,627,049	-				-0.4
4,627,049	-		HGI48_RS20695	0.79	+1.9
4,627,116	+		HGI48_RS20695	0.90	-0.1
4,627,116	+				+1.2
4,627,116	+		HGI48_RS20695	0.90	+0.9
4,627,116	+		HGI48_RS20695	0.90	+1.4
4,627,116	+		HGI48_RS20695	0.90	+0.4
4,627,117	-		HGI48_RS20695	0.90	+2.1
4,627,117	-		HGI48_RS20695	0.90	-2.4
4,627,117	-		HGI48_RS20695	0.90	+0.2
4,627,117	-		HGI48_RS20695	0.90	+0.3
4,627,117	-		HGI48_RS20695	0.90	-0.2
4,627,117	-				-0.4
4,627,117	-		HGI48_RS20695	0.90	-0.1
4,627,117	-		HGI48_RS20695	0.90	-1.6
4,627,117	-		HGI48_RS20695	0.90	+1.6
4,627,117	-		HGI48_RS20695	0.90	-0.0
4,627,117	-				+0.2
4,627,117	-		HGI48_RS20695	0.90	-0.8
4,627,117	-		HGI48_RS20695	0.90	-1.9
4,627,170	-				-0.8
4,627,177	-				-0.4
4,627,177	-				-0.4
4,627,240	+				+0.4
4,627,241	-				-0.5
4,627,257	+				+2.2
4,627,257	+				-0.6
4,627,258	-				-1.2
4,627,258	-				+1.2
4,627,258	-				-1.1
4,627,276	-				-0.4
4,627,504	+				-0.4
4,627,505	-				+0.6
4,627,717	+				+1.0
4,627,731	-				-0.0
4,627,731	-				+0.2
4,627,742	+				-0.8
4,627,743	-				+1.5
4,627,743	-				-1.4
4,627,969	+		HGI48_RS20705	0.19	-0.9
4,627,969	+				+0.6
4,627,969	+		HGI48_RS20705	0.19	+0.9
4,627,970	-		HGI48_RS20705	0.19	+1.7
4,627,970	-				-0.4
4,627,970	-				+2.5
4,627,970	-		HGI48_RS20705	0.19	+1.2
4,627,970	-		HGI48_RS20705	0.19	-0.8
4,627,970	-				-0.4
4,627,970	-		HGI48_RS20705	0.19	+0.2
4,627,970	-		HGI48_RS20705	0.19	-0.8
4,628,075	+		HGI48_RS20705	0.28	-1.1
4,628,075	+		HGI48_RS20705	0.28	+0.4
4,628,075	+		HGI48_RS20705	0.28	+1.2
4,628,075	+		HGI48_RS20705	0.28	-0.8
4,628,076	-		HGI48_RS20705	0.28	-1.4
4,628,078	+		HGI48_RS20705	0.28	+0.9
4,628,078	+		HGI48_RS20705	0.28	-1.9
4,628,078	+		HGI48_RS20705	0.28	+0.6
4,628,079	-		HGI48_RS20705	0.29	-0.7
4,628,079	-		HGI48_RS20705	0.29	-1.5
4,628,079	-		HGI48_RS20705	0.29	-1.4
4,628,079	-		HGI48_RS20705	0.29	-0.8
4,628,089	-		HGI48_RS20705	0.29	-1.9
4,628,146	-		HGI48_RS20705	0.34	-1.1
4,628,220	+		HGI48_RS20705	0.40	+0.5
4,628,220	+		HGI48_RS20705	0.40	-1.4
4,628,220	+				-0.4
4,628,220	+		HGI48_RS20705	0.40	-0.8
4,628,220	+		HGI48_RS20705	0.40	-0.1
4,628,220	+		HGI48_RS20705	0.40	-1.6
4,628,220	+				+0.6
4,628,221	-		HGI48_RS20705	0.41	-0.8
4,628,221	-		HGI48_RS20705	0.41	-1.4
4,628,221	-		HGI48_RS20705	0.41	-0.8
4,628,221	-		HGI48_RS20705	0.41	+0.2
4,628,222	+		HGI48_RS20705	0.41	+0.1
4,628,222	+		HGI48_RS20705	0.41	-2.6
4,628,222	+		HGI48_RS20705	0.41	-0.8
4,628,222	+		HGI48_RS20705	0.41	-0.1
4,628,222	+		HGI48_RS20705	0.41	+0.9
4,628,223	-		HGI48_RS20705	0.41	-0.8
4,628,223	-		HGI48_RS20705	0.41	-0.0
4,628,223	-				+0.6
4,628,223	-		HGI48_RS20705	0.41	-0.6
4,628,223	-		HGI48_RS20705	0.41	-1.4
4,628,223	-		HGI48_RS20705	0.41	-1.4
4,628,223	-		HGI48_RS20705	0.41	+0.5
4,628,223	-		HGI48_RS20705	0.41	+0.5
4,628,223	-				-0.4
4,628,223	-		HGI48_RS20705	0.41	+0.2
4,628,223	-		HGI48_RS20705	0.41	-0.4
4,628,223	-				+1.2
4,628,223	-		HGI48_RS20705	0.41	+0.5
4,628,223	-		HGI48_RS20705	0.41	+0.2
4,628,223	-		HGI48_RS20705	0.41	-2.1
4,628,223	-		HGI48_RS20705	0.41	+0.7
4,628,223	-		HGI48_RS20705	0.41	+0.1
4,628,307	-		HGI48_RS20705	0.48	+1.1
4,628,420	+		HGI48_RS20705	0.57	+0.2
4,628,546	+		HGI48_RS20705	0.68	-0.8
4,628,659	+		HGI48_RS20705	0.77	+0.8
4,628,726	+		HGI48_RS20705	0.83	+0.6
4,628,895	+				+2.2
4,628,896	-				+1.0
4,628,896	-				+1.2
4,628,896	-				-0.1
4,628,939	+				-1.7
4,628,953	+				-0.5
4,628,953	+				+0.6
4,628,953	+				-2.7
4,628,953	+				-1.4
4,628,954	-				+0.2
4,628,954	-				+0.7
4,628,954	-				-0.3
4,628,954	-				-1.4
4,628,954	-				+1.1
4,628,954	-				-0.5
4,628,958	+				+1.1
4,628,958	+				-1.2
4,628,959	-				+1.1
4,629,008	+				+0.6
4,629,009	-				-0.6
4,629,009	-				-1.8
4,629,025	+				+0.4
4,629,051	+				+1.8
4,629,052	-				-0.4
4,629,052	-				+0.0
4,629,103	+		HGI48_RS20710	0.13	-0.2
4,629,343	+		HGI48_RS20710	0.47	-0.6
4,629,343	+		HGI48_RS20710	0.47	-1.0
4,629,343	+		HGI48_RS20710	0.47	+0.7
4,629,343	+		HGI48_RS20710	0.47	-0.6
4,629,343	+		HGI48_RS20710	0.47	-0.1
4,629,343	+		HGI48_RS20710	0.47	-0.7
4,629,344	-				+1.2
4,629,344	-		HGI48_RS20710	0.47	+0.5
4,629,344	-		HGI48_RS20710	0.47	-1.1
4,629,344	-		HGI48_RS20710	0.47	-1.9
4,629,364	+		HGI48_RS20710	0.50	-1.1
4,629,364	+		HGI48_RS20710	0.50	+1.2
4,629,372	+		HGI48_RS20710	0.51	+0.5
4,629,372	+		HGI48_RS20710	0.51	+0.5
4,629,372	+		HGI48_RS20710	0.51	-0.5
4,629,372	+		HGI48_RS20710	0.51	-0.1
4,629,372	+		HGI48_RS20710	0.51	+1.2
4,629,372	+		HGI48_RS20710	0.51	-1.4
4,629,373	-		HGI48_RS20710	0.51	-0.3
4,629,373	-		HGI48_RS20710	0.51	+0.2
4,629,373	-		HGI48_RS20710	0.51	-0.3
4,629,373	-		HGI48_RS20710	0.51	-0.1
4,629,388	+		HGI48_RS20710	0.54	+0.5
4,629,389	-		HGI48_RS20710	0.54	+0.0
4,629,644	+				-1.9
4,629,644	+				-0.4
4,629,713	+				+0.3
4,629,713	+				-0.7
4,629,713	+				+0.6
4,629,713	+				-0.8
4,629,713	+				+0.6
4,629,714	-				+0.8
4,629,714	-				+2.2
4,629,714	-				-0.0
4,629,721	+				+0.1
4,629,722	-				+0.8
4,629,722	-				+0.0
4,629,722	-				+0.9
4,629,722	-				+1.4
4,629,736	+				-0.8
4,629,737	-				-1.1
4,629,815	-		HGI48_RS20715	0.12	+0.0
4,629,815	-		HGI48_RS20715	0.12	+0.2
4,629,858	+		HGI48_RS20715	0.18	-1.2
4,629,858	+				+0.2
4,629,859	-		HGI48_RS20715	0.18	-0.4