Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16445

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,684,737	+		HGI48_RS16435	0.57	+1.0
3,684,738	-		HGI48_RS16435	0.57	-0.2
3,684,777	-		HGI48_RS16435	0.61	+0.3
3,684,879	+		HGI48_RS16435	0.71	-0.3
3,684,879	+		HGI48_RS16435	0.71	-0.8
3,684,879	+				-0.0
3,684,880	-		HGI48_RS16435	0.71	-0.6
3,684,880	-		HGI48_RS16435	0.71	+0.3
3,684,880	-		HGI48_RS16435	0.71	-0.3
3,684,880	-		HGI48_RS16435	0.71	-0.4
3,684,883	+		HGI48_RS16435	0.71	+1.5
3,684,884	-		HGI48_RS16435	0.71	+0.4
3,684,884	-		HGI48_RS16435	0.71	-1.6
3,684,884	-		HGI48_RS16435	0.71	-0.2
3,684,884	-		HGI48_RS16435	0.71	-0.0
3,685,126	-				+0.7
3,685,183	-				+0.2
3,685,183	-				-1.0
3,685,198	+				-0.6
3,685,241	+				+0.4
3,685,241	+				+1.8
3,685,254	+				+2.1
3,685,364	+		HGI48_RS16440	0.31	-1.0
3,685,364	+		HGI48_RS16440	0.31	+0.3
3,685,364	+		HGI48_RS16440	0.31	-2.2
3,685,365	-		HGI48_RS16440	0.31	-0.3
3,685,365	-		HGI48_RS16440	0.31	+1.0
3,685,365	-		HGI48_RS16440	0.31	-0.3
3,685,365	-		HGI48_RS16440	0.31	+0.3
3,685,366	+		HGI48_RS16440	0.32	-0.3
3,685,366	+		HGI48_RS16440	0.32	+0.6
3,685,366	+		HGI48_RS16440	0.32	-0.6
3,685,366	+		HGI48_RS16440	0.32	+1.7
3,685,419	+		HGI48_RS16440	0.55	+0.6
3,685,419	+		HGI48_RS16440	0.55	-1.6
3,685,420	-		HGI48_RS16440	0.55	-0.0
3,685,442	+		HGI48_RS16440	0.65	+2.1
3,685,442	+		HGI48_RS16440	0.65	-0.2
3,685,443	-		HGI48_RS16440	0.65	-0.2
3,685,443	-				-0.6
3,685,463	+		HGI48_RS16440	0.74	+0.3
3,685,463	+		HGI48_RS16440	0.74	-0.5
3,685,475	-		HGI48_RS16440	0.79	+0.5
3,685,486	-		HGI48_RS16440	0.84	-1.0
3,685,523	-				+0.5
3,685,555	+				+0.1
3,685,556	-				-0.3
3,685,559	+				-1.3
3,685,584	+				+1.2
3,685,587	+				-1.8
3,685,587	+				-0.6
3,685,587	+				+0.2
3,685,587	+				+1.7
3,685,588	-				+0.3
3,685,588	-				-0.0
3,685,588	-				-0.0
3,685,588	-				-1.0
3,685,588	-				+1.4
3,685,588	-				-0.0
3,685,591	+				+1.8
3,685,592	-				+0.1
3,685,592	-				-0.8
3,685,613	+				+2.0
3,685,614	-				-0.6
3,685,766	+		HGI48_RS16445	0.22	-2.0
3,685,766	+		HGI48_RS16445	0.22	-0.4
3,685,766	+		HGI48_RS16445	0.22	+0.4
3,685,766	+		HGI48_RS16445	0.22	-0.0
3,685,766	+		HGI48_RS16445	0.22	-0.4
3,685,766	+		HGI48_RS16445	0.22	+0.0
3,685,767	-		HGI48_RS16445	0.22	-1.2
3,685,767	-		HGI48_RS16445	0.22	-0.0
3,685,767	-		HGI48_RS16445	0.22	-1.8
3,685,767	-		HGI48_RS16445	0.22	-0.3
3,685,767	-		HGI48_RS16445	0.22	+0.2
3,685,767	-		HGI48_RS16445	0.22	+0.5
3,685,767	-		HGI48_RS16445	0.22	-0.0
3,685,768	+		HGI48_RS16445	0.22	+0.7
3,685,768	+		HGI48_RS16445	0.22	+0.4
3,685,768	+		HGI48_RS16445	0.22	+0.4
3,685,768	+		HGI48_RS16445	0.22	-1.3
3,685,769	-		HGI48_RS16445	0.22	-1.9
3,685,769	-		HGI48_RS16445	0.22	-0.0
3,685,769	-		HGI48_RS16445	0.22	-0.5
3,685,769	-		HGI48_RS16445	0.22	-0.0
3,685,769	-		HGI48_RS16445	0.22	+2.6
3,685,769	-		HGI48_RS16445	0.22	-1.4
3,685,770	+		HGI48_RS16445	0.22	-0.0
3,685,771	-		HGI48_RS16445	0.22	+1.8
3,685,771	-		HGI48_RS16445	0.22	+1.2
3,685,778	-		HGI48_RS16445	0.23	+0.7
3,685,911	+		HGI48_RS16445	0.43	-0.2
3,685,923	-		HGI48_RS16445	0.44	-0.0
3,686,000	+		HGI48_RS16445	0.55	-0.6
3,686,000	+		HGI48_RS16445	0.55	-0.6
3,686,001	-		HGI48_RS16445	0.56	-1.8
3,686,013	+		HGI48_RS16445	0.57	-0.8
3,686,013	+		HGI48_RS16445	0.57	+1.0
3,686,013	+		HGI48_RS16445	0.57	+0.2
3,686,014	-				-0.6
3,686,014	-		HGI48_RS16445	0.57	+1.0
3,686,017	+		HGI48_RS16445	0.58	+0.8
3,686,018	-				+0.4
3,686,018	-		HGI48_RS16445	0.58	+1.6
3,686,079	+		HGI48_RS16445	0.67	+0.8
3,686,082	+		HGI48_RS16445	0.67	+0.2
3,686,082	+		HGI48_RS16445	0.67	+1.0
3,686,082	+		HGI48_RS16445	0.67	-1.3
3,686,083	-		HGI48_RS16445	0.67	+0.8
3,686,083	-		HGI48_RS16445	0.67	-0.7
3,686,086	-		HGI48_RS16445	0.68	-0.6
3,686,095	+		HGI48_RS16445	0.69	+0.1
3,686,096	-		HGI48_RS16445	0.69	+0.2
3,686,096	-		HGI48_RS16445	0.69	+0.1
3,686,165	-		HGI48_RS16445	0.79	-2.6
3,686,173	+		HGI48_RS16445	0.80	-1.3
3,686,203	+		HGI48_RS16445	0.85	+1.0
3,686,203	+		HGI48_RS16445	0.85	-1.0
3,686,203	+		HGI48_RS16445	0.85	+1.8
3,686,203	+		HGI48_RS16445	0.85	+1.2
3,686,204	-		HGI48_RS16445	0.85	-1.0
3,686,225	-		HGI48_RS16445	0.88	-0.4
3,686,280	+				+0.5
3,686,280	+				+1.0
3,686,281	-				+0.4
3,686,281	-				-0.3
3,686,281	-				+0.7
3,686,281	-				-0.6
3,686,281	-				+0.7
3,686,281	-				-0.0
3,686,290	+				-0.0
3,686,291	-				-1.6
3,686,300	+				-0.3
3,686,300	+				-0.0
3,686,301	-				-1.6
3,686,301	-				-0.6
3,686,308	+				-0.0
3,686,308	+				+1.4
3,686,308	+				+0.5
3,686,308	+				-1.9
3,686,318	+				-0.0
3,686,319	-				-0.8
3,686,319	-				+0.8
3,686,319	-				+1.0
3,686,319	-				+0.2
3,686,325	+				-0.3
3,686,428	-				+0.3
3,686,428	-				-2.0
3,686,434	-				-1.0
3,686,447	-				-0.2
3,686,508	+				+1.8
3,686,509	-				-1.1
3,686,509	-				+2.2
3,686,561	-				+1.3
3,686,561	-				+1.6
3,686,715	-				-0.6
3,686,715	-		HGI48_RS16450	0.12	-2.0
3,686,778	+		HGI48_RS16450	0.18	-1.3
3,686,778	+		HGI48_RS16450	0.18	+0.1
3,686,779	-		HGI48_RS16450	0.18	+0.6
3,686,779	-		HGI48_RS16450	0.18	-1.6
3,686,781	-				+0.4
3,686,781	-		HGI48_RS16450	0.18	+0.7
3,686,842	+		HGI48_RS16450	0.24	+0.0
3,686,842	+		HGI48_RS16450	0.24	-0.3
3,687,102	-		HGI48_RS16450	0.49	-0.3
3,687,155	-		HGI48_RS16450	0.54	-0.8
3,687,252	+				-0.6
3,687,258	+		HGI48_RS16450	0.64	-1.0