Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14985

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,370,470	+		HGI48_RS14975	0.79	-0.7
3,370,470	+		HGI48_RS14975	0.79	-0.1
3,370,470	+		HGI48_RS14975	0.79	+0.5
3,370,470	+		HGI48_RS14975	0.79	-0.1
3,370,470	+		HGI48_RS14975	0.79	+0.9
3,370,470	+		HGI48_RS14975	0.79	+0.6
3,370,471	-		HGI48_RS14975	0.79	-1.4
3,370,471	-				+0.9
3,370,471	-		HGI48_RS14975	0.79	+0.7
3,370,484	+		HGI48_RS14975	0.83	+0.7
3,370,485	-		HGI48_RS14975	0.83	-0.3
3,370,485	-		HGI48_RS14975	0.83	+1.1
3,370,485	-		HGI48_RS14975	0.83	+1.9
3,370,485	-		HGI48_RS14975	0.83	-1.9
3,370,498	-				+1.5
3,370,509	-				-1.6
3,370,569	-				-0.8
3,370,569	-				-1.9
3,370,569	-				+0.5
3,370,575	+				-1.2
3,370,575	+				+0.6
3,370,576	-				-0.3
3,370,576	-				-0.8
3,370,576	-				-0.1
3,370,589	+		HGI48_RS14980	0.12	+0.1
3,370,599	+		HGI48_RS14980	0.15	+0.2
3,370,611	-		HGI48_RS14980	0.19	+1.2
3,370,636	+		HGI48_RS14980	0.27	+0.0
3,370,637	-		HGI48_RS14980	0.27	-0.6
3,370,644	-		HGI48_RS14980	0.29	-0.8
3,370,663	+		HGI48_RS14980	0.35	-0.5
3,370,663	+		HGI48_RS14980	0.35	-0.7
3,370,664	-		HGI48_RS14980	0.35	+0.5
3,370,664	-		HGI48_RS14980	0.35	-0.1
3,370,664	-		HGI48_RS14980	0.35	-1.0
3,370,664	-				-0.1
3,370,702	+		HGI48_RS14980	0.47	-0.1
3,370,702	+		HGI48_RS14980	0.47	-0.3
3,370,703	-		HGI48_RS14980	0.47	-1.9
3,370,822	+		HGI48_RS14980	0.83	-0.3
3,370,822	+		HGI48_RS14980	0.83	-0.7
3,370,822	+		HGI48_RS14980	0.83	-0.1
3,370,822	+		HGI48_RS14980	0.83	-0.5
3,370,823	-		HGI48_RS14980	0.84	+0.2
3,370,823	-		HGI48_RS14980	0.84	-0.4
3,370,823	-		HGI48_RS14980	0.84	-1.7
3,370,884	+				-0.5
3,370,884	+				+0.6
3,370,885	-				+0.2
3,370,885	-				-0.1
3,370,910	-				-0.5
3,370,974	+				+0.2
3,371,020	+				-0.7
3,371,078	-				+0.2
3,371,093	-				+0.2
3,371,137	+				-0.1
3,371,137	+				+0.9
3,371,137	+				+1.2
3,371,137	+				+0.5
3,371,138	-				+2.1
3,371,139	+				+0.6
3,371,139	+				+0.5
3,371,139	+				-0.1
3,371,140	-				-0.4
3,371,140	-				-0.4
3,371,140	-				+0.6
3,371,146	+				+0.5
3,371,188	+				-0.1
3,371,188	+				+0.4
3,371,188	+				-0.3
3,371,188	+				+0.2
3,371,189	-				-0.1
3,371,189	-				+2.2
3,371,189	-				+1.3
3,371,189	-				+0.4
3,371,189	-				+0.2
3,371,189	-				-0.7
3,371,189	-				+0.4
3,371,195	+				+0.9
3,371,196	-				-0.9
3,371,207	-				+2.1
3,371,213	+				+0.5
3,371,213	+				-0.7
3,371,213	+				+0.1
3,371,224	+				+0.9
3,371,224	+				+0.9
3,371,241	-				-1.7
3,371,241	-				+0.6
3,371,303	-				+1.3
3,371,310	+				+0.1
3,371,310	+				-0.1
3,371,311	-				+0.5
3,371,311	-				-1.8
3,371,315	+				-0.7
3,371,315	+				+0.6
3,371,316	-				-1.1
3,371,408	-				+0.9
3,371,409	+				+1.3
3,371,409	+				-1.4
3,371,410	-				+1.6
3,371,410	-				+0.0
3,371,410	-				-1.1
3,371,445	+				-0.3
3,371,445	+				+1.9
3,371,446	-				-0.3
3,371,446	-				-1.8
3,371,460	+				+0.9
3,371,461	-				+0.1
3,371,467	-				+0.4
3,371,616	+		HGI48_RS14985	0.15	+0.3
3,371,666	+		HGI48_RS14985	0.20	-1.7
3,371,830	+		HGI48_RS14985	0.34	+0.2
3,371,831	-				+0.9
3,371,884	-		HGI48_RS14985	0.39	-0.4
3,371,976	+		HGI48_RS14985	0.47	-0.4
3,371,976	+		HGI48_RS14985	0.47	+1.2
3,371,981	+		HGI48_RS14985	0.48	-1.4
3,371,981	+		HGI48_RS14985	0.48	-1.7
3,371,981	+		HGI48_RS14985	0.48	-0.1
3,371,981	+		HGI48_RS14985	0.48	-0.7
3,371,982	-		HGI48_RS14985	0.48	+1.3
3,371,982	-		HGI48_RS14985	0.48	-0.7
3,371,982	-		HGI48_RS14985	0.48	+0.9
3,371,982	-		HGI48_RS14985	0.48	-0.5
3,371,982	-				+1.9
3,371,983	+		HGI48_RS14985	0.48	-0.4
3,371,984	-				-0.7
3,371,985	+		HGI48_RS14985	0.48	+0.5
3,371,985	+		HGI48_RS14985	0.48	-0.1
3,371,985	+		HGI48_RS14985	0.48	-0.7
3,371,986	-		HGI48_RS14985	0.48	+1.9
3,371,986	-		HGI48_RS14985	0.48	+0.4
3,371,986	-		HGI48_RS14985	0.48	+0.1
3,372,075	-		HGI48_RS14985	0.56	-0.1
3,372,075	-		HGI48_RS14985	0.56	-0.5
3,372,075	-		HGI48_RS14985	0.56	-0.9
3,372,094	+		HGI48_RS14985	0.58	+1.0
3,372,127	+		HGI48_RS14985	0.61	+0.1
3,372,128	-		HGI48_RS14985	0.61	-1.1
3,372,128	-		HGI48_RS14985	0.61	+0.1
3,372,130	-		HGI48_RS14985	0.61	+0.9
3,372,130	-		HGI48_RS14985	0.61	-0.1
3,372,130	-		HGI48_RS14985	0.61	-0.4
3,372,144	-		HGI48_RS14985	0.62	+0.2
3,372,144	-		HGI48_RS14985	0.62	-1.4
3,372,237	+		HGI48_RS14985	0.70	-0.3
3,372,260	+		HGI48_RS14985	0.73	-2.4
3,372,307	+		HGI48_RS14985	0.77	+0.3
3,372,308	-		HGI48_RS14985	0.77	-0.7
3,372,565	+				+1.1
3,372,566	-				+0.1
3,372,566	-				+0.3
3,372,566	-				-2.1
3,372,617	+				-0.1
3,372,617	+				-1.7
3,372,674	+				-2.0
3,372,679	+				-0.7
3,372,761	+				-0.0
3,372,761	+				+0.4
3,372,761	+				-1.4
3,372,761	+				-0.1
3,372,762	-				-0.2
3,372,762	-				+2.0
3,372,831	+				-1.7
3,372,832	-				+0.5
3,372,832	-				-0.4
3,372,832	-				-0.1
3,372,951	+		HGI48_RS14990	0.57	-0.5
3,372,957	-		HGI48_RS14990	0.60	+0.9
3,372,957	-		HGI48_RS14990	0.60	-0.1
3,372,960	+				+0.3
3,372,961	-		HGI48_RS14990	0.62	+0.5
3,372,961	-		HGI48_RS14990	0.62	-1.3
3,372,961	-		HGI48_RS14990	0.62	-0.1
3,372,961	-		HGI48_RS14990	0.62	-2.1
3,372,961	-		HGI48_RS14990	0.62	-1.9
3,373,015	-				-0.7
3,373,030	+				-0.3
3,373,031	-				-0.1
3,373,062	+				-0.6
3,373,062	+				-0.4
3,373,062	+				+0.3
3,373,063	-				+0.9
3,373,063	-				+1.2
3,373,088	-				-0.7
3,373,203	+				+1.9
3,373,203	+				-1.0
3,373,292	-				-0.1
3,373,398	-		HGI48_RS14995	0.18	+0.7
3,373,440	+		HGI48_RS14995	0.22	-0.4
3,373,512	-		HGI48_RS14995	0.29	-1.3
3,373,512	-		HGI48_RS14995	0.29	-0.3