Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14800

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,332,473	+		HGI48_RS14795	0.24	+1.6
3,332,474	-		HGI48_RS14795	0.24	-1.0
3,332,474	-		HGI48_RS14795	0.24	+0.6
3,332,474	-		HGI48_RS14795	0.24	-0.7
3,332,607	+		HGI48_RS14795	0.35	+0.5
3,332,607	+		HGI48_RS14795	0.35	-0.3
3,332,608	-		HGI48_RS14795	0.35	+2.3
3,332,608	-		HGI48_RS14795	0.35	+1.3
3,332,617	+		HGI48_RS14795	0.36	-0.7
3,332,648	+		HGI48_RS14795	0.38	-0.4
3,332,789	+		HGI48_RS14795	0.50	+0.0
3,332,801	-		HGI48_RS14795	0.51	-0.1
3,332,805	+				+1.6
3,332,805	+		HGI48_RS14795	0.51	-0.3
3,332,806	-		HGI48_RS14795	0.51	-1.0
3,332,908	+		HGI48_RS14795	0.59	-2.7
3,332,909	-		HGI48_RS14795	0.59	-1.9
3,332,930	+		HGI48_RS14795	0.61	-0.8
3,332,930	+		HGI48_RS14795	0.61	+0.5
3,332,931	-		HGI48_RS14795	0.61	+0.9
3,333,089	+		HGI48_RS14795	0.74	+0.2
3,333,089	+		HGI48_RS14795	0.74	+0.2
3,333,089	+		HGI48_RS14795	0.74	+0.4
3,333,090	-		HGI48_RS14795	0.74	+0.4
3,333,183	-				+0.9
3,333,183	-		HGI48_RS14795	0.81	+0.6
3,333,227	+		HGI48_RS14795	0.85	-0.7
3,333,227	+		HGI48_RS14795	0.85	-0.6
3,333,227	+				+0.3
3,333,227	+		HGI48_RS14795	0.85	+1.1
3,333,227	+		HGI48_RS14795	0.85	-2.1
3,333,227	+		HGI48_RS14795	0.85	+0.3
3,333,227	+		HGI48_RS14795	0.85	-1.1
3,333,227	+		HGI48_RS14795	0.85	-0.4
3,333,228	-		HGI48_RS14795	0.85	-0.9
3,333,228	-		HGI48_RS14795	0.85	+0.2
3,333,228	-		HGI48_RS14795	0.85	+0.4
3,333,228	-		HGI48_RS14795	0.85	+0.9
3,333,250	+				+1.3
3,333,250	+		HGI48_RS14795	0.86	-0.1
3,333,251	-		HGI48_RS14795	0.87	-1.1
3,333,251	-		HGI48_RS14795	0.87	-1.1
3,333,251	-				+1.3
3,333,407	+				-1.7
3,333,407	+				-0.4
3,333,408	-				-1.7
3,333,423	+				-1.1
3,333,424	-				-1.3
3,333,424	-				-0.1
3,333,457	+				-0.9
3,333,458	-				+0.0
3,333,460	+				-0.7
3,333,460	+				+0.7
3,333,487	+				-0.9
3,333,487	+				-0.4
3,333,488	-				-0.4
3,333,488	-				-2.9
3,333,488	-				+2.4
3,333,488	-				+0.6
3,333,496	+				-2.0
3,333,496	+				+0.9
3,333,497	-				-1.7
3,333,497	-				+0.2
3,333,522	-		HGI48_RS14800	0.12	+0.2
3,333,601	-		HGI48_RS14800	0.20	+0.9
3,333,674	+		HGI48_RS14800	0.28	-1.4
3,333,674	+		HGI48_RS14800	0.28	+1.4
3,333,674	+		HGI48_RS14800	0.28	+0.6
3,333,674	+		HGI48_RS14800	0.28	+0.5
3,333,675	-		HGI48_RS14800	0.28	-2.1
3,333,675	-		HGI48_RS14800	0.28	-0.5
3,333,679	-		HGI48_RS14800	0.28	+0.9
3,333,679	-		HGI48_RS14800	0.28	-0.0
3,333,679	-		HGI48_RS14800	0.28	+1.0
3,333,679	-		HGI48_RS14800	0.28	+0.3
3,333,752	-		HGI48_RS14800	0.36	-1.1
3,333,774	+		HGI48_RS14800	0.39	-1.4
3,333,775	-		HGI48_RS14800	0.39	-0.1
3,333,834	+		HGI48_RS14800	0.45	-1.0
3,333,835	-		HGI48_RS14800	0.45	-0.8
3,333,835	-		HGI48_RS14800	0.45	+0.8
3,333,858	+		HGI48_RS14800	0.48	+0.5
3,333,858	+		HGI48_RS14800	0.48	-0.9
3,333,858	+		HGI48_RS14800	0.48	-1.1
3,333,858	+		HGI48_RS14800	0.48	-0.2
3,333,859	-		HGI48_RS14800	0.48	+0.9
3,333,862	-		HGI48_RS14800	0.48	-1.9
3,333,862	-		HGI48_RS14800	0.48	+2.6
3,333,877	-		HGI48_RS14800	0.50	-0.4
3,333,883	+		HGI48_RS14800	0.50	+0.1
3,333,933	+				+0.3
3,333,933	+				-0.7
3,333,933	+		HGI48_RS14800	0.56	-0.1
3,333,933	+		HGI48_RS14800	0.56	+0.3
3,333,959	+				+1.9
3,333,960	-		HGI48_RS14800	0.59	+0.5
3,334,011	+		HGI48_RS14800	0.64	-1.4
3,334,011	+		HGI48_RS14800	0.64	-1.4
3,334,011	+		HGI48_RS14800	0.64	-0.3
3,334,012	-		HGI48_RS14800	0.64	-0.7
3,334,026	-				+0.3
3,334,122	+		HGI48_RS14800	0.76	-1.1
3,334,122	+		HGI48_RS14800	0.76	-1.7
3,334,170	+		HGI48_RS14800	0.81	-0.4
3,334,170	+		HGI48_RS14800	0.81	-1.9
3,334,170	+		HGI48_RS14800	0.81	-1.1
3,334,170	+		HGI48_RS14800	0.81	+0.2
3,334,171	-		HGI48_RS14800	0.82	+3.9
3,334,171	-		HGI48_RS14800	0.82	-0.5
3,334,171	-		HGI48_RS14800	0.82	+0.6
3,334,171	-		HGI48_RS14800	0.82	+0.9
3,334,172	+		HGI48_RS14800	0.82	-1.4
3,334,172	+		HGI48_RS14800	0.82	-2.7
3,334,172	+		HGI48_RS14800	0.82	+0.5
3,334,172	+		HGI48_RS14800	0.82	+0.5
3,334,172	-		HGI48_RS14800	0.82	-0.1
3,334,173	-		HGI48_RS14800	0.82	-1.1
3,334,173	-		HGI48_RS14800	0.82	-0.4
3,334,173	-		HGI48_RS14800	0.82	-0.1
3,334,205	+		HGI48_RS14800	0.85	-1.1
3,334,205	+				+5.2
3,334,258	+				+0.2
3,334,276	-				+0.3
3,334,331	+				-0.4
3,334,332	-				+0.9
3,334,335	+				-0.6
3,334,335	+				-2.1
3,334,403	-				+0.1
3,334,403	-				+0.5
3,334,459	+				+2.0
3,334,459	+				+0.1
3,334,459	+				+1.2
3,334,459	+				-0.3
3,334,459	+				-2.4
3,334,459	+				-1.0
3,334,460	-				+0.1
3,334,460	-				+0.4
3,334,461	+				+0.8
3,334,461	+				+1.9
3,334,461	+				+0.2
3,334,461	+				+2.7
3,334,461	+				-0.8
3,334,462	-				-0.3
3,334,462	-				-0.7
3,334,462	-				+0.7
3,334,462	-				-1.4
3,334,463	+				-0.2
3,334,463	+				+0.9
3,334,463	+				-0.7
3,334,463	+				-0.7
3,334,463	+				-0.1
3,334,463	+				+1.7
3,334,463	+				-1.1
3,334,464	-				+0.2
3,334,464	-				+1.2
3,334,464	-				+0.1
3,334,464	-				-0.8
3,334,469	+				-0.4
3,334,470	-				-0.7
3,334,470	-				-0.8
3,334,484	+				-1.4
3,334,484	+				+2.2
3,334,485	-				-1.8
3,334,490	+				+0.2
3,334,546	-				-2.6
3,334,546	-				+1.5
3,334,617	+		HGI48_RS14805	0.15	-1.6
3,334,617	+		HGI48_RS14805	0.15	-1.1
3,334,636	-		HGI48_RS14805	0.21	-0.6
3,334,709	+		HGI48_RS14805	0.44	-1.0
3,334,713	+				-0.7
3,334,713	+		HGI48_RS14805	0.45	-1.7
3,334,713	+		HGI48_RS14805	0.45	+0.3
3,334,713	+		HGI48_RS14805	0.45	-0.1
3,334,713	+		HGI48_RS14805	0.45	-0.1
3,334,713	+		HGI48_RS14805	0.45	-0.8
3,334,714	-		HGI48_RS14805	0.46	+0.5
3,334,728	-		HGI48_RS14805	0.50	-1.0
3,334,782	+		HGI48_RS14805	0.67	+0.2
3,334,784	+		HGI48_RS14805	0.68	+0.2
3,334,784	+		HGI48_RS14805	0.68	+1.4
3,334,785	-		HGI48_RS14805	0.68	+0.7
3,334,785	-		HGI48_RS14805	0.68	-0.1
3,334,785	-				-0.7
3,334,785	-		HGI48_RS14805	0.68	-1.2
3,334,798	+		HGI48_RS14805	0.72	-1.1
3,334,879	-				+1.2
3,334,892	-				-0.4
3,334,892	-				+2.1
3,334,910	+				-2.1
3,334,913	+				-1.4
3,334,914	-				+1.7
3,334,914	-				-0.1
3,334,949	+				-0.3
3,334,949	+				+0.9
3,334,949	+				+0.6
3,334,950	-				+0.9
3,334,950	-				-1.4
3,334,950	-				+0.8
3,334,950	-				-1.0
3,334,954	+				+2.1
3,334,954	+				-1.4
3,334,954	+				-0.7
3,334,954	+				-1.9
3,334,954	+				-0.1
3,334,954	+				+0.5
3,334,955	-				+0.7
3,334,955	-				-1.4
3,334,955	-				-1.9
3,334,955	-				+2.5
3,334,955	-				+0.1
3,334,960	-				+0.3
3,334,960	-				-0.4
3,334,960	-				-0.1
3,334,961	+				+0.9
3,334,961	+				-0.5
3,334,961	+				-2.1
3,334,961	+				+0.1
3,334,961	+				-0.7
3,334,961	+				-0.7
3,334,962	-				+1.2
3,334,962	-				+0.1
3,334,962	-				-0.7
3,334,962	-				-0.4
3,334,962	-				-1.9
3,334,994	+				-0.7
3,334,994	+				-1.1
3,334,994	+				+0.4
3,334,994	+				+0.2
3,335,019	-				-0.5
3,335,041	-				+0.9
3,335,041	-				-0.1
3,335,048	-				+0.4
3,335,048	-				-0.8
3,335,068	+				+1.3
3,335,068	+				-0.3
3,335,068	+				+0.6
3,335,068	+				+1.5
3,335,069	-				+1.3
3,335,069	-				+0.5
3,335,069	-				+1.8
3,335,069	-				+0.1
3,335,069	-				-0.1
3,335,069	-				-0.1
3,335,069	-				-0.3
3,335,069	-				-0.2
3,335,069	-				-0.7
3,335,069	-				-2.4
3,335,074	-				+0.3
3,335,082	-				+0.4
3,335,085	+				+3.2
3,335,086	-				-0.2
3,335,125	+				+0.6
3,335,125	+				-1.4
3,335,157	+				-1.1
3,335,158	-				-0.7
3,335,158	-				-0.8
3,335,188	+				-0.1
3,335,199	+				-0.7
3,335,199	+				-1.1
3,335,199	+				+0.6
3,335,222	+				-1.1
3,335,223	-				-0.7
3,335,223	-				+0.7
3,335,223	-				-0.1
3,335,223	-				-0.2
3,335,329	+				-1.6
3,335,329	+				+0.2
3,335,330	-				+0.9
3,335,330	-				+0.5
3,335,330	-				-1.4
3,335,330	-				+0.7