Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14010

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,132,584	-				-0.7
3,132,601	+				-0.2
3,132,602	-				-1.5
3,132,620	-				-2.5
3,132,669	-				-0.4
3,132,678	+				-0.2
3,132,678	+				-1.1
3,132,678	+				+1.8
3,132,678	+				-0.3
3,132,679	-				-1.0
3,132,891	+		HGI48_RS14005	0.29	+0.1
3,132,891	+		HGI48_RS14005	0.29	-1.5
3,132,891	+		HGI48_RS14005	0.29	-1.7
3,132,893	+				-0.2
3,132,893	+		HGI48_RS14005	0.29	-1.2
3,132,893	+		HGI48_RS14005	0.29	-0.6
3,132,893	+		HGI48_RS14005	0.29	-0.3
3,132,893	+		HGI48_RS14005	0.29	-1.1
3,132,893	+		HGI48_RS14005	0.29	+0.6
3,132,893	+		HGI48_RS14005	0.29	-2.9
3,132,894	-		HGI48_RS14005	0.29	-0.8
3,132,894	-		HGI48_RS14005	0.29	+0.0
3,132,894	-		HGI48_RS14005	0.29	-0.5
3,132,894	-				+1.2
3,132,923	+		HGI48_RS14005	0.33	-1.8
3,132,923	+		HGI48_RS14005	0.33	+1.1
3,132,923	+		HGI48_RS14005	0.33	-2.5
3,132,924	-		HGI48_RS14005	0.33	+0.0
3,132,924	-		HGI48_RS14005	0.33	-0.5
3,132,924	-				+0.2
3,132,924	-		HGI48_RS14005	0.33	-1.2
3,132,924	-		HGI48_RS14005	0.33	-2.0
3,132,924	-		HGI48_RS14005	0.33	+0.7
3,132,927	+		HGI48_RS14005	0.33	+0.1
3,132,927	+		HGI48_RS14005	0.33	+0.1
3,132,928	-		HGI48_RS14005	0.33	+0.5
3,132,940	+		HGI48_RS14005	0.35	-1.5
3,133,005	+		HGI48_RS14005	0.43	-1.5
3,133,005	+		HGI48_RS14005	0.43	-2.1
3,133,005	+				+0.8
3,133,006	-				-0.8
3,133,006	-		HGI48_RS14005	0.43	-1.8
3,133,006	-				+0.8
3,133,008	+		HGI48_RS14005	0.44	+0.6
3,133,008	+		HGI48_RS14005	0.44	+0.1
3,133,008	+		HGI48_RS14005	0.44	-0.5
3,133,119	+		HGI48_RS14005	0.58	+0.0
3,133,119	+		HGI48_RS14005	0.58	-1.2
3,133,192	-		HGI48_RS14005	0.67	-1.2
3,133,195	-		HGI48_RS14005	0.67	-0.6
3,133,195	-		HGI48_RS14005	0.67	-0.1
3,133,197	+		HGI48_RS14005	0.68	+0.4
3,133,198	-		HGI48_RS14005	0.68	-1.1
3,133,198	-		HGI48_RS14005	0.68	+0.2
3,133,198	-				-0.8
3,133,293	+		HGI48_RS14005	0.80	-0.5
3,133,324	+		HGI48_RS14005	0.84	+0.5
3,133,324	+		HGI48_RS14005	0.84	-1.3
3,133,325	-		HGI48_RS14005	0.84	+0.8
3,133,325	-		HGI48_RS14005	0.84	-1.0
3,133,325	-		HGI48_RS14005	0.84	+0.6
3,133,425	+				+0.1
3,133,449	+				+1.7
3,133,449	+				-0.8
3,133,449	+				-0.1
3,133,450	-				+0.2
3,133,450	-				-0.8
3,133,450	-				-1.5
3,133,450	-				-0.0
3,133,450	-				-1.0
3,133,450	-				-1.7
3,133,463	+				+0.2
3,133,464	-				+0.4
3,133,466	+				-0.5
3,133,498	+				+1.4
3,133,498	+				+0.9
3,133,498	+				-0.1
3,133,499	-				+3.5
3,133,499	-				-1.4
3,133,502	+				-0.4
3,133,502	+				+1.8
3,133,503	-				-0.0
3,133,503	-				+0.3
3,133,503	-				+0.2
3,133,503	-				-0.6
3,133,526	-				+0.2
3,133,526	-				-0.8
3,133,561	+				-0.8
3,133,561	+				-0.2
3,133,561	+				-0.0
3,133,561	+				-2.2
3,133,582	+				+0.5
3,133,714	-		HGI48_RS14010	0.17	-1.2
3,133,744	+		HGI48_RS14010	0.20	+0.2
3,133,744	+		HGI48_RS14010	0.20	+1.0
3,133,744	+		HGI48_RS14010	0.20	-1.0
3,133,745	-				+0.8
3,133,745	-		HGI48_RS14010	0.20	-0.5
3,133,745	-		HGI48_RS14010	0.20	+0.6
3,133,745	-		HGI48_RS14010	0.20	+0.8
3,133,745	-		HGI48_RS14010	0.20	-0.7
3,133,748	+		HGI48_RS14010	0.21	-1.5
3,133,749	-		HGI48_RS14010	0.21	-1.8
3,133,777	+		HGI48_RS14010	0.23	-2.0
3,133,791	+		HGI48_RS14010	0.24	-1.1
3,133,791	+		HGI48_RS14010	0.24	-2.6
3,133,791	+		HGI48_RS14010	0.24	-0.4
3,133,791	+		HGI48_RS14010	0.24	-0.5
3,133,791	+		HGI48_RS14010	0.24	+0.3
3,133,792	-		HGI48_RS14010	0.25	-0.2
3,133,792	-		HGI48_RS14010	0.25	+0.6
3,133,834	+		HGI48_RS14010	0.28	-1.0
3,133,834	+		HGI48_RS14010	0.28	-0.3
3,133,845	+		HGI48_RS14010	0.29	+1.0
3,133,846	-		HGI48_RS14010	0.29	+1.4
3,133,846	-		HGI48_RS14010	0.29	-0.4
3,133,850	+		HGI48_RS14010	0.30	-0.0
3,133,871	-		HGI48_RS14010	0.32	+0.8
3,133,871	-		HGI48_RS14010	0.32	-0.8
3,133,876	+		HGI48_RS14010	0.32	-2.0
3,133,876	+		HGI48_RS14010	0.32	-1.2
3,133,877	-		HGI48_RS14010	0.32	-1.2
3,133,911	-				-0.2
3,133,987	-		HGI48_RS14010	0.42	-0.0
3,133,987	-		HGI48_RS14010	0.42	-0.2
3,134,033	+		HGI48_RS14010	0.47	+0.1
3,134,033	+		HGI48_RS14010	0.47	-0.1
3,134,034	-		HGI48_RS14010	0.47	+0.6
3,134,074	+		HGI48_RS14010	0.50	-0.2
3,134,196	+		HGI48_RS14010	0.62	+0.5
3,134,196	+		HGI48_RS14010	0.62	-2.9
3,134,197	-		HGI48_RS14010	0.62	-1.8
3,134,197	-		HGI48_RS14010	0.62	+0.5
3,134,286	+		HGI48_RS14010	0.70	-0.5
3,134,286	+		HGI48_RS14010	0.70	-0.2
3,134,286	+		HGI48_RS14010	0.70	-0.3
3,134,287	-				-0.2
3,134,287	-		HGI48_RS14010	0.70	-1.5
3,134,287	-		HGI48_RS14010	0.70	+0.8
3,134,287	-		HGI48_RS14010	0.70	-0.2
3,134,304	+		HGI48_RS14010	0.71	-0.2
3,134,304	+		HGI48_RS14010	0.71	-0.5
3,134,304	+				+2.4
3,134,305	-		HGI48_RS14010	0.72	-0.2
3,134,305	-		HGI48_RS14010	0.72	-1.0
3,134,319	+		HGI48_RS14010	0.73	-0.2
3,134,319	+				-0.2
3,134,320	-		HGI48_RS14010	0.73	+0.2
3,134,320	-		HGI48_RS14010	0.73	-1.2
3,134,320	-		HGI48_RS14010	0.73	-1.5
3,134,325	+		HGI48_RS14010	0.73	-1.5
3,134,325	+				+0.8
3,134,392	+				+0.8
3,134,392	+		HGI48_RS14010	0.79	-0.6
3,134,393	-		HGI48_RS14010	0.80	-2.0
3,134,434	-				+1.2
3,134,434	-		HGI48_RS14010	0.83	-0.2
3,134,451	-		HGI48_RS14010	0.85	-1.5
3,134,482	+		HGI48_RS14010	0.88	-0.2
3,134,531	+				-0.1
3,134,555	+				-0.2
3,134,555	+				-0.6
3,134,556	-				+0.8
3,134,556	-				-0.2
3,134,556	-				-0.4
3,134,556	-				+0.8
3,134,585	+				+1.8
3,134,588	-				-1.0
3,134,598	+				-1.7
3,134,630	+				-0.1
3,134,631	-				-0.3
3,134,641	+				-0.6
3,134,697	-				+0.3
3,134,719	+				-0.4
3,134,719	+				-1.1
3,134,719	+				-0.2
3,134,719	+				-1.2
3,134,719	+				+0.8
3,134,720	-				-0.2
3,134,720	-				-1.0
3,134,836	-		HGI48_RS14015	0.15	+0.4
3,134,845	+		HGI48_RS14015	0.16	+0.8
3,134,845	+		HGI48_RS14015	0.16	-1.5
3,134,845	+		HGI48_RS14015	0.16	-0.3
3,134,845	+		HGI48_RS14015	0.16	-0.4
3,134,845	+		HGI48_RS14015	0.16	+0.2
3,134,846	-		HGI48_RS14015	0.16	-2.0
3,134,846	-		HGI48_RS14015	0.16	-2.0
3,134,846	-		HGI48_RS14015	0.16	-0.4
3,134,846	-		HGI48_RS14015	0.16	+0.5
3,134,849	+		HGI48_RS14015	0.17	+0.3
3,134,849	+		HGI48_RS14015	0.17	-1.2
3,134,850	-				+0.8
3,134,850	-		HGI48_RS14015	0.17	-0.7
3,134,850	-				+0.2
3,134,852	-		HGI48_RS14015	0.17	-0.9
3,134,896	-		HGI48_RS14015	0.25	-0.2
3,134,896	-		HGI48_RS14015	0.25	+0.4
3,134,969	+		HGI48_RS14015	0.38	+0.2
3,134,970	-		HGI48_RS14015	0.39	-2.5
3,134,970	-		HGI48_RS14015	0.39	+0.4
3,135,003	+		HGI48_RS14015	0.44	+0.5
3,135,003	+		HGI48_RS14015	0.44	-0.7
3,135,003	+		HGI48_RS14015	0.44	-1.0
3,135,003	+		HGI48_RS14015	0.44	-1.5
3,135,006	+		HGI48_RS14015	0.45	+0.4
3,135,006	+		HGI48_RS14015	0.45	-0.8
3,135,006	+		HGI48_RS14015	0.45	+0.6
3,135,006	+				-0.8
3,135,006	+				+2.2
3,135,007	-		HGI48_RS14015	0.45	+0.5
3,135,007	-		HGI48_RS14015	0.45	+0.5
3,135,007	-		HGI48_RS14015	0.45	-0.8
3,135,007	-		HGI48_RS14015	0.45	+0.0
3,135,007	-		HGI48_RS14015	0.45	-0.2
3,135,007	-		HGI48_RS14015	0.45	-1.5
3,135,010	+		HGI48_RS14015	0.46	+0.3
3,135,010	+		HGI48_RS14015	0.46	+0.7
3,135,010	+				+0.8
3,135,032	+				+1.8
3,135,032	+				-0.8
3,135,071	+		HGI48_RS14015	0.57	-1.8
3,135,071	+		HGI48_RS14015	0.57	-0.0
3,135,095	+		HGI48_RS14015	0.61	-1.2
3,135,096	-		HGI48_RS14015	0.61	-1.0
3,135,096	-				-0.8
3,135,140	-		HGI48_RS14015	0.69	+0.7
3,135,372	+				+0.5
3,135,372	+				+0.7
3,135,373	-				+0.2
3,135,375	+				+0.8
3,135,401	+				-1.5
3,135,401	+				-1.4
3,135,402	-				+0.0
3,135,402	-				-0.2
3,135,402	-				-0.2
3,135,402	-				-1.8
3,135,407	+				+0.8
3,135,408	-				-1.5
3,135,561	+				-0.4