Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13985

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,127,676	-		HGI48_RS13980	0.66	-1.5
3,127,676	-		HGI48_RS13980	0.66	-0.2
3,127,676	-		HGI48_RS13980	0.66	-2.0
3,127,676	-		HGI48_RS13980	0.66	+0.2
3,127,706	+		HGI48_RS13980	0.67	-0.1
3,127,718	-		HGI48_RS13980	0.68	+0.1
3,127,763	+		HGI48_RS13980	0.69	+0.2
3,127,763	+		HGI48_RS13980	0.69	+0.2
3,127,763	+		HGI48_RS13980	0.69	-0.2
3,127,764	-		HGI48_RS13980	0.69	+0.4
3,127,764	-		HGI48_RS13980	0.69	-1.2
3,127,764	-		HGI48_RS13980	0.69	+0.2
3,127,764	-		HGI48_RS13980	0.69	+1.2
3,127,764	-		HGI48_RS13980	0.69	-0.2
3,127,819	+		HGI48_RS13980	0.71	-0.4
3,127,889	+		HGI48_RS13980	0.74	+0.3
3,127,890	-		HGI48_RS13980	0.74	+0.1
3,127,952	-		HGI48_RS13980	0.76	+0.3
3,127,976	+		HGI48_RS13980	0.77	+0.9
3,127,996	+		HGI48_RS13980	0.77	+0.4
3,127,997	-				-0.8
3,128,028	-		HGI48_RS13980	0.78	-0.8
3,128,042	-		HGI48_RS13980	0.79	+0.0
3,128,072	+		HGI48_RS13980	0.80	+0.8
3,128,072	+				+1.3
3,128,072	+		HGI48_RS13980	0.80	-0.1
3,128,072	+		HGI48_RS13980	0.80	-0.6
3,128,072	+		HGI48_RS13980	0.80	-0.6
3,128,073	-		HGI48_RS13980	0.80	-1.6
3,128,073	-		HGI48_RS13980	0.80	-0.8
3,128,073	-		HGI48_RS13980	0.80	-0.2
3,128,099	-		HGI48_RS13980	0.81	-0.2
3,128,099	-		HGI48_RS13980	0.81	-0.6
3,128,099	-		HGI48_RS13980	0.81	-0.3
3,128,290	+		HGI48_RS13980	0.87	-0.1
3,128,291	-		HGI48_RS13980	0.87	-2.0
3,128,447	-				-1.8
3,128,549	-				-1.2
3,128,550	+				-0.0
3,128,710	-				+0.4
3,128,768	+				-0.1
3,128,841	+				+0.5
3,128,916	+		HGI48_RS13985	0.13	-0.2
3,129,017	+		HGI48_RS13985	0.19	-0.2
3,129,017	+		HGI48_RS13985	0.19	-0.4
3,129,018	-		HGI48_RS13985	0.19	-0.7
3,129,018	-		HGI48_RS13985	0.19	-0.2
3,129,024	+		HGI48_RS13985	0.19	-2.8
3,129,024	+		HGI48_RS13985	0.19	-1.7
3,129,025	-		HGI48_RS13985	0.19	+0.4
3,129,025	-		HGI48_RS13985	0.19	+1.8
3,129,123	+		HGI48_RS13985	0.24	-1.6
3,129,124	-		HGI48_RS13985	0.24	-1.6
3,129,152	-		HGI48_RS13985	0.26	+0.4
3,129,195	+		HGI48_RS13985	0.28	+0.2
3,129,207	+		HGI48_RS13985	0.29	-0.8
3,129,207	+		HGI48_RS13985	0.29	+0.8
3,129,208	-		HGI48_RS13985	0.29	+0.0
3,129,208	-		HGI48_RS13985	0.29	-0.0
3,129,208	-		HGI48_RS13985	0.29	+0.6
3,129,208	-		HGI48_RS13985	0.29	+0.3
3,129,236	+		HGI48_RS13985	0.30	+1.3
3,129,237	-		HGI48_RS13985	0.30	+0.0
3,129,237	-		HGI48_RS13985	0.30	-1.2
3,129,237	-		HGI48_RS13985	0.30	-1.4
3,129,281	+		HGI48_RS13985	0.33	-0.2
3,129,282	-		HGI48_RS13985	0.33	-0.4
3,129,307	+		HGI48_RS13985	0.34	-0.2
3,129,308	-		HGI48_RS13985	0.34	-0.5
3,129,308	-		HGI48_RS13985	0.34	-1.6
3,129,308	-		HGI48_RS13985	0.34	+0.3
3,129,380	-		HGI48_RS13985	0.38	+0.2
3,129,411	-		HGI48_RS13985	0.39	-1.6
3,129,455	+		HGI48_RS13985	0.42	-1.1
3,129,455	+				+1.8
3,129,456	-		HGI48_RS13985	0.42	+0.5
3,129,456	-		HGI48_RS13985	0.42	-2.0
3,129,456	-		HGI48_RS13985	0.42	-0.1
3,129,456	-		HGI48_RS13985	0.42	+0.0
3,129,459	+		HGI48_RS13985	0.42	-1.0
3,129,459	+		HGI48_RS13985	0.42	+1.9
3,129,459	+		HGI48_RS13985	0.42	-0.2
3,129,476	-		HGI48_RS13985	0.43	+0.0
3,129,546	-		HGI48_RS13985	0.47	-0.6
3,129,549	+		HGI48_RS13985	0.47	+0.6
3,129,550	-		HGI48_RS13985	0.47	+0.5
3,129,550	-		HGI48_RS13985	0.47	-1.6
3,129,550	-		HGI48_RS13985	0.47	-0.2
3,129,550	-		HGI48_RS13985	0.47	-0.2
3,129,664	+		HGI48_RS13985	0.53	-0.5
3,129,665	-		HGI48_RS13985	0.53	+0.0
3,129,705	+		HGI48_RS13985	0.55	+0.8
3,129,706	-		HGI48_RS13985	0.55	-0.6
3,129,735	+		HGI48_RS13985	0.57	-0.4
3,129,736	-				+0.2
3,129,742	+		HGI48_RS13985	0.57	-1.2
3,129,815	+		HGI48_RS13985	0.61	-0.0
3,129,815	+		HGI48_RS13985	0.61	-1.2
3,129,816	-		HGI48_RS13985	0.61	+0.3
3,129,895	+		HGI48_RS13985	0.65	+0.6
3,129,895	+		HGI48_RS13985	0.65	-1.2
3,129,895	+		HGI48_RS13985	0.65	-0.0
3,129,895	+		HGI48_RS13985	0.65	-0.8
3,129,895	+		HGI48_RS13985	0.65	-1.0
3,129,989	-		HGI48_RS13985	0.70	+0.5
3,130,001	+		HGI48_RS13985	0.71	+0.7
3,130,001	+		HGI48_RS13985	0.71	-1.0
3,130,001	+				+0.2
3,130,001	+		HGI48_RS13985	0.71	+1.8
3,130,002	-				+2.3
3,130,002	-		HGI48_RS13985	0.71	+0.5
3,130,002	-		HGI48_RS13985	0.71	-0.3
3,130,002	-		HGI48_RS13985	0.71	-0.3
3,130,026	+		HGI48_RS13985	0.72	-0.2
3,130,029	+		HGI48_RS13985	0.72	-0.4
3,130,030	-		HGI48_RS13985	0.72	+0.4
3,130,055	+		HGI48_RS13985	0.73	+0.9
3,130,056	-		HGI48_RS13985	0.73	-1.2
3,130,060	-		HGI48_RS13985	0.74	+0.8
3,130,069	-		HGI48_RS13985	0.74	-0.7
3,130,069	-		HGI48_RS13985	0.74	-1.6
3,130,086	+		HGI48_RS13985	0.75	-0.0
3,130,086	+		HGI48_RS13985	0.75	-0.1
3,130,086	+		HGI48_RS13985	0.75	-0.8
3,130,087	-		HGI48_RS13985	0.75	+1.2
3,130,087	-		HGI48_RS13985	0.75	+0.5
3,130,087	-		HGI48_RS13985	0.75	-1.2
3,130,183	-		HGI48_RS13985	0.80	-2.9
3,130,236	+		HGI48_RS13985	0.83	-2.4
3,130,236	+				+1.8
3,130,252	+		HGI48_RS13985	0.84	+0.8
3,130,252	+		HGI48_RS13985	0.84	+1.2
3,130,253	-		HGI48_RS13985	0.84	+1.0
3,130,253	-		HGI48_RS13985	0.84	+1.0
3,130,258	+		HGI48_RS13985	0.84	-0.2
3,130,258	+		HGI48_RS13985	0.84	-1.7
3,130,259	-		HGI48_RS13985	0.84	-0.8
3,130,268	-		HGI48_RS13985	0.85	-1.2
3,130,281	-		HGI48_RS13985	0.85	-2.2
3,130,281	-		HGI48_RS13985	0.85	-2.0
3,130,315	-		HGI48_RS13985	0.87	-0.2
3,130,320	+		HGI48_RS13985	0.87	+0.3
3,130,321	-		HGI48_RS13985	0.87	+0.0
3,130,475	+				-0.4
3,130,481	-				-0.5
3,130,486	+				-1.2
3,130,498	+				+0.2
3,130,498	+				-1.6
3,130,498	+				-1.0
3,130,500	+				+1.2
3,130,523	+				+0.8
3,130,523	+				-0.8
3,130,524	-				+0.8
3,130,524	-				-0.2
3,130,543	+				-1.2
3,130,544	-				+0.0
3,130,544	-				-2.9
3,130,547	+				-0.4
3,130,547	+				+0.4
3,130,547	+				-1.2
3,130,547	+				-1.5
3,130,548	-				+0.8
3,130,605	+				-0.6
3,130,605	+				+0.5
3,130,624	+				-0.2
3,130,624	+				-1.9
3,130,625	-				+0.5
3,130,626	+				+0.1
3,130,626	+				+0.5
3,130,626	+				-2.0
3,130,626	+				-0.8
3,130,626	+				-2.0
3,130,626	+				+0.1
3,130,626	+				-1.2
3,130,626	+				+0.6
3,130,627	-				-0.5
3,130,627	-				-0.6
3,130,627	-				+0.2
3,130,627	-				-0.0
3,130,627	-				-0.2
3,130,627	-				-1.0
3,130,628	+				+0.3
3,130,628	+				-0.2
3,130,628	+				+0.4
3,130,628	+				-1.2
3,130,628	+				+1.0
3,130,628	+				-0.2
3,130,628	+				-0.8
3,130,629	-				+1.2
3,130,629	-				-0.8
3,130,629	-				-0.1
3,130,668	+		HGI48_RS13990	0.17	-0.7
3,130,668	+				-0.2
3,130,668	+		HGI48_RS13990	0.17	-0.5
3,130,668	+		HGI48_RS13990	0.17	-0.1
3,130,669	-		HGI48_RS13990	0.17	-0.0
3,130,669	-		HGI48_RS13990	0.17	-1.7
3,130,669	-		HGI48_RS13990	0.17	-0.9
3,130,670	+		HGI48_RS13990	0.17	-0.2
3,130,671	-		HGI48_RS13990	0.18	-0.2
3,130,671	-		HGI48_RS13990	0.18	+0.1
3,130,683	+		HGI48_RS13990	0.20	+0.0
3,130,683	+		HGI48_RS13990	0.20	-0.0
3,130,683	+		HGI48_RS13990	0.20	-0.6
3,130,684	-		HGI48_RS13990	0.21	+1.1
3,130,688	-		HGI48_RS13990	0.21	-0.2
3,130,688	-		HGI48_RS13990	0.21	+0.4
3,130,712	+		HGI48_RS13990	0.27	-0.2
3,130,712	+		HGI48_RS13990	0.27	-0.3
3,130,713	-		HGI48_RS13990	0.27	-2.4
3,130,822	-		HGI48_RS13990	0.52	+0.2
3,130,857	+		HGI48_RS13990	0.60	-0.1
3,130,857	+		HGI48_RS13990	0.60	-0.2
3,130,857	+		HGI48_RS13990	0.60	-1.2
3,130,857	+		HGI48_RS13990	0.60	+0.8
3,130,858	-		HGI48_RS13990	0.60	-0.0
3,130,858	-		HGI48_RS13990	0.60	+3.7
3,130,858	-		HGI48_RS13990	0.60	-0.3
3,130,858	-		HGI48_RS13990	0.60	-0.3
3,130,858	-		HGI48_RS13990	0.60	-0.1
3,130,858	-				+0.2
3,130,931	+				-0.2
3,130,931	+				-0.8
3,130,932	-		HGI48_RS13990	0.77	-2.5
3,130,934	+		HGI48_RS13990	0.78	+3.0
3,130,964	+				+1.2
3,130,965	-		HGI48_RS13990	0.85	+0.3
3,131,029	+				-1.6
3,131,042	+				+0.6
3,131,042	+				+0.2
3,131,042	+				-0.2
3,131,043	-				-0.2
3,131,043	-				+1.0
3,131,046	+				+0.5
3,131,046	+				+0.8
3,131,127	+				-0.2
3,131,129	+				-1.3
3,131,140	+				+0.8
3,131,193	+		HGI48_RS13995	0.21	+0.5
3,131,193	+		HGI48_RS13995	0.21	+0.9
3,131,193	+		HGI48_RS13995	0.21	+0.5
3,131,350	+				-1.4
3,131,350	+				-1.6
3,131,351	-				-0.2
3,131,362	+				-0.5
3,131,362	+				+0.4
3,131,365	+				-1.2
3,131,365	+				-0.2
3,131,365	+				+1.2
3,131,366	-				+0.3
3,131,366	-				-0.0
3,131,366	-				+1.6
3,131,366	-				+0.8
3,131,366	-				-0.2
3,131,409	-				+0.5
3,131,409	-				-0.6
3,131,457	+				+1.4
3,131,473	+				+1.8
3,131,486	-				-1.0
3,131,486	-				-0.3
3,131,486	-				+0.9
3,131,529	-				+0.6
3,131,540	-				-0.3
3,131,546	+				-0.5
3,131,547	-				+0.8
3,131,547	-				-0.8