Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13475

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,950,200	+		HGI48_RS13465	0.86	-0.8
2,950,201	-		HGI48_RS13465	0.87	+0.4
2,950,201	-		HGI48_RS13465	0.87	+0.1
2,950,201	-		HGI48_RS13465	0.87	+0.2
2,950,201	-		HGI48_RS13465	0.87	-0.3
2,950,235	-				+2.3
2,950,235	-				-0.5
2,950,238	+				+0.9
2,950,238	+				+1.0
2,950,238	+				-2.3
2,950,238	+				-1.6
2,950,238	+				-1.9
2,950,239	-				+0.7
2,950,239	-				-1.2
2,950,239	-				+3.1
2,950,239	-				+1.1
2,950,254	-				-0.6
2,950,317	-				-2.3
2,950,319	+		HGI48_RS13470	0.10	+0.3
2,950,319	+		HGI48_RS13470	0.10	-0.5
2,950,319	+		HGI48_RS13470	0.10	-0.6
2,950,320	-				+0.1
2,950,320	-		HGI48_RS13470	0.10	-1.3
2,950,337	+		HGI48_RS13470	0.13	-0.6
2,950,349	+		HGI48_RS13470	0.14	+0.3
2,950,349	+		HGI48_RS13470	0.14	+0.1
2,950,349	+		HGI48_RS13470	0.14	+1.1
2,950,349	+				-0.9
2,950,349	+		HGI48_RS13470	0.14	+0.6
2,950,349	+		HGI48_RS13470	0.14	+0.1
2,950,350	-		HGI48_RS13470	0.14	+1.9
2,950,350	-		HGI48_RS13470	0.14	-0.4
2,950,350	-		HGI48_RS13470	0.14	-0.7
2,950,471	+		HGI48_RS13470	0.30	+0.6
2,950,471	+		HGI48_RS13470	0.30	-0.6
2,950,472	-		HGI48_RS13470	0.30	+0.8
2,950,472	-		HGI48_RS13470	0.30	+1.5
2,950,477	+		HGI48_RS13470	0.30	+0.4
2,950,478	-				+3.1
2,950,478	-		HGI48_RS13470	0.31	+0.2
2,950,483	+				-0.9
2,950,483	+		HGI48_RS13470	0.31	+0.2
2,950,483	+				+0.7
2,950,483	+		HGI48_RS13470	0.31	+0.2
2,950,483	+		HGI48_RS13470	0.31	+0.3
2,950,484	-		HGI48_RS13470	0.31	-2.3
2,950,484	-		HGI48_RS13470	0.31	-1.3
2,950,484	-		HGI48_RS13470	0.31	-0.5
2,950,484	-		HGI48_RS13470	0.31	-1.9
2,950,542	-		HGI48_RS13470	0.39	-2.3
2,950,572	-		HGI48_RS13470	0.43	+1.3
2,950,572	-				-0.9
2,950,572	-		HGI48_RS13470	0.43	-1.8
2,950,602	-		HGI48_RS13470	0.46	+2.3
2,950,669	+		HGI48_RS13470	0.55	+0.7
2,950,669	+		HGI48_RS13470	0.55	-0.9
2,950,669	+		HGI48_RS13470	0.55	+0.8
2,950,669	+		HGI48_RS13470	0.55	-0.9
2,950,669	+				-0.9
2,950,669	+		HGI48_RS13470	0.55	-1.3
2,950,669	+		HGI48_RS13470	0.55	-0.2
2,950,670	-		HGI48_RS13470	0.55	+0.7
2,950,670	-		HGI48_RS13470	0.55	-0.6
2,950,670	-		HGI48_RS13470	0.55	+0.2
2,950,670	-		HGI48_RS13470	0.55	+0.7
2,950,670	-		HGI48_RS13470	0.55	-2.1
2,950,670	-		HGI48_RS13470	0.55	-0.1
2,950,670	-		HGI48_RS13470	0.55	+0.1
2,950,670	-		HGI48_RS13470	0.55	-0.6
2,950,670	-		HGI48_RS13470	0.55	+0.1
2,950,679	-		HGI48_RS13470	0.56	+0.2
2,950,679	-				-0.9
2,950,736	+		HGI48_RS13470	0.63	-0.4
2,950,736	+		HGI48_RS13470	0.63	-1.6
2,950,741	+		HGI48_RS13470	0.64	+0.3
2,950,741	+		HGI48_RS13470	0.64	+0.7
2,950,741	+		HGI48_RS13470	0.64	-1.6
2,950,741	+		HGI48_RS13470	0.64	-0.9
2,950,741	+		HGI48_RS13470	0.64	+0.2
2,950,742	-		HGI48_RS13470	0.64	-1.1
2,950,742	-		HGI48_RS13470	0.64	+0.3
2,950,742	-		HGI48_RS13470	0.64	-0.3
2,950,742	-		HGI48_RS13470	0.64	+0.3
2,950,742	-		HGI48_RS13470	0.64	-0.3
2,950,742	-		HGI48_RS13470	0.64	-1.6
2,950,742	-		HGI48_RS13470	0.64	-0.6
2,950,742	-		HGI48_RS13470	0.64	-1.6
2,950,742	-		HGI48_RS13470	0.64	+0.5
2,950,745	+		HGI48_RS13470	0.65	+0.1
2,950,745	+		HGI48_RS13470	0.65	-0.1
2,950,745	+				+1.3
2,950,746	-		HGI48_RS13470	0.65	+2.1
2,950,746	-		HGI48_RS13470	0.65	-0.2
2,950,746	-		HGI48_RS13470	0.65	-0.6
2,950,774	+		HGI48_RS13470	0.68	+0.7
2,950,775	-				+0.7
2,950,816	+		HGI48_RS13470	0.74	-1.1
2,950,816	+		HGI48_RS13470	0.74	-1.9
2,950,817	-		HGI48_RS13470	0.74	-0.1
2,950,817	-				-0.9
2,950,849	+		HGI48_RS13470	0.78	+1.3
2,950,850	-		HGI48_RS13470	0.78	-0.1
2,950,850	-		HGI48_RS13470	0.78	-1.5
2,950,850	-		HGI48_RS13470	0.78	-0.4
2,950,919	+		HGI48_RS13470	0.87	+0.0
2,950,919	+		HGI48_RS13470	0.87	+0.3
2,950,919	+		HGI48_RS13470	0.87	-0.6
2,950,919	+		HGI48_RS13470	0.87	-0.1
2,950,919	+		HGI48_RS13470	0.87	-2.3
2,950,919	+		HGI48_RS13470	0.87	-0.2
2,950,920	-		HGI48_RS13470	0.87	+0.2
2,950,920	-		HGI48_RS13470	0.87	+0.4
2,950,953	+				+1.3
2,950,953	+				-1.3
2,950,954	-				+0.2
2,950,966	+				+1.1
2,951,000	-				-2.1
2,951,028	+				+0.0
2,951,028	+				+1.3
2,951,058	+				+0.2
2,951,058	+				+2.1
2,951,058	+				+0.1
2,951,058	+				-0.2
2,951,059	-				-0.1
2,951,100	+				-1.9
2,951,100	+				-1.6
2,951,101	-				-0.1
2,951,127	+				-0.1
2,951,127	+				-3.0
2,951,127	+				+1.0
2,951,128	-				+0.0
2,951,154	-				-0.6
2,951,154	-				+2.1
2,951,165	-				-0.7
2,951,205	+				-1.6
2,951,249	+				+1.2
2,951,249	+				+0.4
2,951,249	+				+0.5
2,951,249	+				+1.1
2,951,249	+				+0.5
2,951,249	+				+0.4
2,951,249	+				-2.5
2,951,250	-				+1.3
2,951,250	-				+1.7
2,951,250	-				+0.7
2,951,282	+				-0.3
2,951,282	+				+0.7
2,951,282	+				-0.3
2,951,282	+				+0.8
2,951,282	+				-0.0
2,951,283	-				+0.4
2,951,341	-		HGI48_RS13475	0.15	-0.5
2,951,358	+		HGI48_RS13475	0.17	-0.8
2,951,359	-		HGI48_RS13475	0.17	-0.5
2,951,368	-				-0.9
2,951,428	-		HGI48_RS13475	0.25	+0.4
2,951,428	-		HGI48_RS13475	0.25	+1.9
2,951,443	-				+1.3
2,951,487	+		HGI48_RS13475	0.31	-0.3
2,951,487	+				+1.9
2,951,487	+				+0.7
2,951,488	-		HGI48_RS13475	0.31	+0.6
2,951,557	-		HGI48_RS13475	0.39	-0.5
2,951,580	+		HGI48_RS13475	0.41	+0.6
2,951,581	-		HGI48_RS13475	0.41	+1.0
2,951,584	+				+0.7
2,951,584	+		HGI48_RS13475	0.42	-0.7
2,951,585	-		HGI48_RS13475	0.42	-0.4
2,951,663	+				+2.7
2,951,663	+		HGI48_RS13475	0.50	-0.6
2,951,663	+		HGI48_RS13475	0.50	-1.3
2,951,663	+		HGI48_RS13475	0.50	-0.3
2,951,663	+		HGI48_RS13475	0.50	-1.9
2,951,663	+		HGI48_RS13475	0.50	-0.9
2,951,663	+				-0.3
2,951,663	+		HGI48_RS13475	0.50	-2.5
2,951,663	+		HGI48_RS13475	0.50	-1.3
2,951,663	+		HGI48_RS13475	0.50	-0.2
2,951,663	+		HGI48_RS13475	0.50	+0.7
2,951,664	-		HGI48_RS13475	0.50	+0.4
2,951,688	+		HGI48_RS13475	0.53	+3.2
2,951,689	-		HGI48_RS13475	0.53	-0.4
2,951,689	-		HGI48_RS13475	0.53	+2.0
2,951,689	-		HGI48_RS13475	0.53	-1.3
2,951,715	-		HGI48_RS13475	0.56	-1.3
2,951,829	+		HGI48_RS13475	0.68	-1.3
2,951,842	+		HGI48_RS13475	0.69	+2.7
2,951,842	+				+0.7
2,951,842	+		HGI48_RS13475	0.69	-1.3
2,951,843	-		HGI48_RS13475	0.69	-1.0
2,951,878	+		HGI48_RS13475	0.73	+1.9
2,951,905	-		HGI48_RS13475	0.76	+2.6
2,951,911	-		HGI48_RS13475	0.77	-0.4
2,951,928	+		HGI48_RS13475	0.79	-0.6
2,951,941	-		HGI48_RS13475	0.80	-0.9
2,951,941	-		HGI48_RS13475	0.80	-1.3
2,951,941	-		HGI48_RS13475	0.80	-1.6
2,951,941	-		HGI48_RS13475	0.80	-2.3
2,951,941	-				+1.7
2,951,941	-				+1.7
2,951,942	+		HGI48_RS13475	0.80	-1.9
2,952,028	-		HGI48_RS13475	0.89	+1.1
2,952,090	+				+1.0
2,952,090	+				-0.3
2,952,091	-				+1.6
2,952,109	-				-2.3
2,952,109	-				+1.2
2,952,126	+				+0.3
2,952,131	+				-0.7
2,952,132	-				+0.4
2,952,132	-				-0.5
2,952,132	-				-1.0
2,952,138	+				-0.5
2,952,192	-				+0.8
2,952,211	-				-0.6
2,952,229	+				+0.1
2,952,229	+				+2.3
2,952,229	+				-1.0
2,952,230	-				+0.6
2,952,230	-				-2.5
2,952,230	-				+0.9
2,952,230	-				+2.9
2,952,230	-				-2.5
2,952,230	-				-0.1
2,952,230	-				-0.3
2,952,230	-				+0.0
2,952,230	-				+2.0
2,952,233	-				-1.2
2,952,233	-				+1.6
2,952,233	-				+1.3
2,952,259	+				-0.2
2,952,260	-				+0.1
2,952,260	-				+2.0
2,952,303	-				+0.1
2,952,335	+				+0.4
2,952,335	+				-1.0
2,952,335	+				-0.3
2,952,336	-				+0.3
2,952,391	+		HGI48_RS13480	0.12	+1.2
2,952,392	-		HGI48_RS13480	0.12	-0.9
2,952,468	-		HGI48_RS13480	0.16	-0.9
2,952,474	+		HGI48_RS13480	0.16	-1.4
2,952,549	-		HGI48_RS13480	0.20	-1.1
2,952,549	-		HGI48_RS13480	0.20	-1.0
2,952,671	+		HGI48_RS13480	0.27	-0.3
2,952,673	+				+3.7
2,952,673	+		HGI48_RS13480	0.27	-0.7
2,952,673	+		HGI48_RS13480	0.27	-0.9
2,952,674	-		HGI48_RS13480	0.27	-0.0
2,952,674	-				+1.3
2,952,758	+		HGI48_RS13480	0.31	+0.5
2,952,758	+		HGI48_RS13480	0.31	-0.5
2,952,758	+		HGI48_RS13480	0.31	-1.7
2,952,759	-		HGI48_RS13480	0.31	-1.3
2,952,761	-		HGI48_RS13480	0.31	-1.9
2,952,761	-		HGI48_RS13480	0.31	-0.3
2,952,761	-		HGI48_RS13480	0.31	+2.9
2,952,761	-				-0.9
2,952,761	-		HGI48_RS13480	0.31	-2.3
2,952,773	+		HGI48_RS13480	0.32	+0.7
2,952,774	-		HGI48_RS13480	0.32	-0.2
2,952,778	+		HGI48_RS13480	0.32	+0.9
2,952,779	-		HGI48_RS13480	0.32	-0.5
2,952,779	-				+1.7
2,952,779	-		HGI48_RS13480	0.32	-0.1
2,952,779	-		HGI48_RS13480	0.32	+1.1
2,952,779	-		HGI48_RS13480	0.32	-2.3
2,952,779	-		HGI48_RS13480	0.32	-0.7
2,952,785	+		HGI48_RS13480	0.33	+0.7
2,952,785	+		HGI48_RS13480	0.33	-1.3
2,952,786	-		HGI48_RS13480	0.33	-2.1
2,952,786	-		HGI48_RS13480	0.33	+0.2
2,952,791	+		HGI48_RS13480	0.33	-0.3
2,952,905	+		HGI48_RS13480	0.39	+1.0
2,952,906	-		HGI48_RS13480	0.39	+0.9
2,953,003	+		HGI48_RS13480	0.44	+1.9
2,953,004	-		HGI48_RS13480	0.44	-1.6
2,953,015	+		HGI48_RS13480	0.45	-1.8
2,953,015	+				-0.9
2,953,015	+		HGI48_RS13480	0.45	+1.9
2,953,015	+		HGI48_RS13480	0.45	+2.6
2,953,016	-				+0.1
2,953,016	-		HGI48_RS13480	0.45	+0.5
2,953,016	-		HGI48_RS13480	0.45	+0.9
2,953,058	+		HGI48_RS13480	0.47	-1.6
2,953,058	+		HGI48_RS13480	0.47	+0.9
2,953,058	+		HGI48_RS13480	0.47	+1.1
2,953,058	+		HGI48_RS13480	0.47	+0.7
2,953,059	-		HGI48_RS13480	0.47	-1.3