Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10380

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,239,685	+				+1.2
2,239,685	+				-0.1
2,239,685	+				+0.0
2,239,700	+				-1.4
2,239,700	+				-0.6
2,239,701	-				-0.2
2,239,738	-				-2.2
2,239,766	+				+0.6
2,239,770	+				-0.7
2,239,770	+				-0.4
2,239,771	-				+1.2
2,239,771	-				+0.2
2,239,775	+				-0.0
2,239,775	+				+1.3
2,239,776	-				-1.5
2,239,783	-				-0.5
2,239,921	+				-1.4
2,239,943	-				+1.2
2,239,943	-				-0.5
2,240,010	-				-0.0
2,240,020	-				+0.8
2,240,027	+				-0.6
2,240,086	-				-1.5
2,240,086	-				+0.4
2,240,163	+				+0.2
2,240,189	+				+0.5
2,240,201	-				+0.4
2,240,217	-				+0.6
2,240,290	+				-0.4
2,240,290	+				-0.7
2,240,334	+				+1.2
2,240,334	+				+1.0
2,240,335	-				+0.6
2,240,449	+				-0.4
2,240,500	-				-0.7
2,240,558	+				+0.1
2,240,558	+				+0.4
2,240,558	+				-1.4
2,240,558	+				+1.6
2,240,558	+				-0.4
2,240,558	+				+0.3
2,240,623	-				-0.2
2,240,625	+				-0.8
2,240,625	+				+0.0
2,240,625	+				+1.5
2,240,625	+				-2.7
2,240,626	-				+0.8
2,240,639	-				-0.6
2,240,663	+				+0.3
2,240,664	-				+0.1
2,240,664	-				-0.0
2,240,679	+				-2.0
2,240,679	+				+1.0
2,240,680	-				-1.0
2,240,680	-				-1.7
2,240,680	-				+0.6
2,240,680	-				-0.2
2,240,684	-				-0.4
2,240,684	-				-2.7
2,240,702	+				-1.2
2,240,738	+				+0.3
2,240,756	-				-0.9
2,240,788	+				+0.7
2,240,819	+				+1.0
2,240,820	-				-0.4
2,240,820	-				+0.6
2,240,855	+		HGI48_RS10380	0.10	-1.0
2,241,009	-		HGI48_RS10380	0.20	+0.9
2,241,009	-		HGI48_RS10380	0.20	-0.3
2,241,009	-		HGI48_RS10380	0.20	-0.8
2,241,018	-		HGI48_RS10380	0.20	-1.0
2,241,051	+		HGI48_RS10380	0.22	-1.5
2,241,052	-				+1.6
2,241,053	+		HGI48_RS10380	0.22	-2.2
2,241,065	+		HGI48_RS10380	0.23	+0.6
2,241,065	+		HGI48_RS10380	0.23	-1.7
2,241,102	+		HGI48_RS10380	0.25	+0.4
2,241,103	-				+0.6
2,241,103	-		HGI48_RS10380	0.25	-0.7
2,241,164	+		HGI48_RS10380	0.29	-1.7
2,241,165	-		HGI48_RS10380	0.29	-1.4
2,241,165	-		HGI48_RS10380	0.29	-1.5
2,241,234	+		HGI48_RS10380	0.33	-1.7
2,241,234	+		HGI48_RS10380	0.33	-0.5
2,241,235	-		HGI48_RS10380	0.33	-0.2
2,241,237	-		HGI48_RS10380	0.34	+0.4
2,241,257	+		HGI48_RS10380	0.35	-1.7
2,241,257	+		HGI48_RS10380	0.35	-1.0
2,241,258	-		HGI48_RS10380	0.35	+0.1
2,241,300	-		HGI48_RS10380	0.37	-0.9
2,241,300	-		HGI48_RS10380	0.37	+0.9
2,241,300	-		HGI48_RS10380	0.37	+0.3
2,241,339	+				+3.0
2,241,340	-		HGI48_RS10380	0.40	-0.4
2,241,342	-		HGI48_RS10380	0.40	-0.7
2,241,342	-		HGI48_RS10380	0.40	-0.1
2,241,435	+				+0.6
2,241,435	+		HGI48_RS10380	0.46	+0.0
2,241,436	-		HGI48_RS10380	0.46	-0.5
2,241,436	-		HGI48_RS10380	0.46	+0.5
2,241,501	+		HGI48_RS10380	0.50	-0.4
2,241,501	+		HGI48_RS10380	0.50	+0.2
2,241,502	-		HGI48_RS10380	0.50	+1.3
2,241,504	-		HGI48_RS10380	0.50	-1.4
2,241,574	-		HGI48_RS10380	0.54	+0.3
2,241,581	+		HGI48_RS10380	0.55	-1.7
2,241,581	+		HGI48_RS10380	0.55	+0.9
2,241,582	-		HGI48_RS10380	0.55	+1.0
2,241,585	+		HGI48_RS10380	0.55	+0.0
2,241,585	+		HGI48_RS10380	0.55	-0.2
2,241,585	+		HGI48_RS10380	0.55	-0.1
2,241,586	-		HGI48_RS10380	0.55	-0.6
2,241,586	-		HGI48_RS10380	0.55	-1.1
2,241,586	-		HGI48_RS10380	0.55	+1.2
2,241,588	+		HGI48_RS10380	0.55	+0.4
2,241,588	+		HGI48_RS10380	0.55	-0.5
2,241,589	-		HGI48_RS10380	0.55	-2.4
2,241,589	-		HGI48_RS10380	0.55	-0.6
2,241,589	-		HGI48_RS10380	0.55	-3.6
2,241,591	+		HGI48_RS10380	0.55	+0.5
2,241,592	-				+0.0
2,241,620	+		HGI48_RS10380	0.57	-0.7
2,241,730	-		HGI48_RS10380	0.64	-2.0
2,241,730	-		HGI48_RS10380	0.64	-0.4
2,241,867	+		HGI48_RS10380	0.72	-1.0
2,241,868	-		HGI48_RS10380	0.72	+0.3
2,241,868	-		HGI48_RS10380	0.72	+0.1
2,241,868	-		HGI48_RS10380	0.72	-0.9
2,241,872	+		HGI48_RS10380	0.72	-0.1
2,241,872	+		HGI48_RS10380	0.72	-0.2
2,241,873	-		HGI48_RS10380	0.72	-2.0
2,241,999	+		HGI48_RS10380	0.80	-0.2
2,241,999	+		HGI48_RS10380	0.80	-2.0
2,241,999	+		HGI48_RS10380	0.80	-1.0
2,242,000	-		HGI48_RS10380	0.80	-0.1
2,242,000	-		HGI48_RS10380	0.80	+0.3
2,242,032	+		HGI48_RS10380	0.82	-0.1
2,242,033	-		HGI48_RS10380	0.82	-0.4
2,242,095	+		HGI48_RS10380	0.86	-0.4
2,242,171	-				-0.4
2,242,171	-				-1.7
2,242,224	+				-0.1
2,242,224	+				-2.0
2,242,225	-				+0.5
2,242,228	-				+0.6
2,242,235	+				+0.6
2,242,254	+				-1.0
2,242,255	-				-2.2
2,242,405	-				-2.2
2,242,405	-				+0.0
2,242,407	-				-0.1
2,242,410	+				-1.0
2,242,411	-				+0.6
2,242,478	-				+0.6
2,242,574	+		HGI48_RS10385	0.17	-0.4
2,242,575	-		HGI48_RS10385	0.17	-0.8
2,242,605	-		HGI48_RS10385	0.20	-0.7
2,242,609	+		HGI48_RS10385	0.21	-1.1
2,242,609	+		HGI48_RS10385	0.21	-2.0
2,242,610	-		HGI48_RS10385	0.21	+0.6
2,242,613	+		HGI48_RS10385	0.21	-0.5
2,242,614	-				+0.0
2,242,614	-		HGI48_RS10385	0.21	-2.2
2,242,674	+		HGI48_RS10385	0.28	+0.2
2,242,802	+		HGI48_RS10385	0.42	-0.4
2,242,802	+		HGI48_RS10385	0.42	-0.5
2,242,803	-				+0.0
2,242,803	-		HGI48_RS10385	0.42	-1.4
2,242,934	+		HGI48_RS10385	0.56	-0.6
2,242,935	-				+2.7
2,242,970	+		HGI48_RS10385	0.60	-0.4
2,242,970	+		HGI48_RS10385	0.60	-0.4
2,242,970	+		HGI48_RS10385	0.60	-0.5
2,242,971	-		HGI48_RS10385	0.60	+0.3
2,242,971	-		HGI48_RS10385	0.60	-1.7
2,242,971	-		HGI48_RS10385	0.60	-2.1
2,242,971	-				+0.0
2,243,158	+		HGI48_RS10385	0.80	+0.1
2,243,158	+		HGI48_RS10385	0.80	+1.0
2,243,185	-		HGI48_RS10385	0.83	-1.0
2,243,232	-		HGI48_RS10385	0.88	+0.6
2,243,284	+				-2.7