Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05230

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,095,019	+		HGI48_RS05220	0.56	+1.3
1,095,019	+		HGI48_RS05220	0.56	+1.4
1,095,019	+		HGI48_RS05220	0.56	+1.0
1,095,019	+		HGI48_RS05220	0.56	-0.1
1,095,019	+		HGI48_RS05220	0.56	-0.3
1,095,019	+		HGI48_RS05220	0.56	-2.3
1,095,020	-		HGI48_RS05220	0.57	-0.6
1,095,020	-		HGI48_RS05220	0.57	+1.3
1,095,020	-		HGI48_RS05220	0.57	-0.8
1,095,020	-		HGI48_RS05220	0.57	-1.3
1,095,020	-		HGI48_RS05220	0.57	-1.8
1,095,020	-		HGI48_RS05220	0.57	+0.2
1,095,020	-		HGI48_RS05220	0.57	-1.6
1,095,020	-		HGI48_RS05220	0.57	-0.1
1,095,021	+				-0.6
1,095,021	+				+1.0
1,095,021	+		HGI48_RS05220	0.57	-0.2
1,095,021	+		HGI48_RS05220	0.57	-0.1
1,095,021	+		HGI48_RS05220	0.57	-1.6
1,095,021	+		HGI48_RS05220	0.57	-0.4
1,095,022	-		HGI48_RS05220	0.57	-1.3
1,095,022	-		HGI48_RS05220	0.57	-1.8
1,095,022	-		HGI48_RS05220	0.57	+0.2
1,095,028	-		HGI48_RS05220	0.58	-1.0
1,095,163	+		HGI48_RS05220	0.83	-0.3
1,095,163	+		HGI48_RS05220	0.83	-2.5
1,095,164	-		HGI48_RS05220	0.83	+0.1
1,095,170	+				-0.6
1,095,171	-		HGI48_RS05220	0.84	-0.0
1,095,171	-		HGI48_RS05220	0.84	+2.8
1,095,188	+		HGI48_RS05220	0.87	-1.3
1,095,189	-		HGI48_RS05220	0.87	+0.5
1,095,189	-		HGI48_RS05220	0.87	-0.8
1,095,189	-		HGI48_RS05220	0.87	-0.2
1,095,189	-		HGI48_RS05220	0.87	-0.2
1,095,189	-		HGI48_RS05220	0.87	-0.3
1,095,189	-		HGI48_RS05220	0.87	+0.7
1,095,233	+				-2.2
1,095,234	-				-1.6
1,095,234	-				-0.0
1,095,234	-				+0.4
1,095,234	-				-1.0
1,095,256	-				-0.3
1,095,299	+				+0.2
1,095,299	+				-1.0
1,095,300	-				-2.2
1,095,300	-				-0.1
1,095,300	-				-1.1
1,095,395	+		HGI48_RS05225	0.15	+1.0
1,095,396	-		HGI48_RS05225	0.15	+1.2
1,095,412	+		HGI48_RS05225	0.18	-0.8
1,095,412	+		HGI48_RS05225	0.18	-1.2
1,095,413	-		HGI48_RS05225	0.18	-0.0
1,095,416	-		HGI48_RS05225	0.18	-2.0
1,095,423	+				+3.1
1,095,424	-		HGI48_RS05225	0.20	+1.0
1,095,457	-		HGI48_RS05225	0.25	-0.0
1,095,457	-		HGI48_RS05225	0.25	+1.4
1,095,457	-		HGI48_RS05225	0.25	+0.5
1,095,506	-		HGI48_RS05225	0.33	+0.2
1,095,506	-		HGI48_RS05225	0.33	-1.0
1,095,506	-				-0.6
1,095,592	+		HGI48_RS05225	0.47	-1.8
1,095,593	-		HGI48_RS05225	0.47	-0.8
1,095,607	+		HGI48_RS05225	0.50	-1.3
1,095,711	+		HGI48_RS05225	0.67	+0.2
1,095,756	+		HGI48_RS05225	0.74	-0.4
1,095,756	+		HGI48_RS05225	0.74	-0.8
1,095,787	+		HGI48_RS05225	0.79	+0.7
1,095,787	+		HGI48_RS05225	0.79	+0.6
1,095,787	+		HGI48_RS05225	0.79	-1.3
1,095,787	+		HGI48_RS05225	0.79	+1.2
1,095,787	+		HGI48_RS05225	0.79	-0.3
1,095,787	+		HGI48_RS05225	0.79	+0.6
1,095,787	+		HGI48_RS05225	0.79	+0.3
1,095,787	+		HGI48_RS05225	0.79	+0.2
1,095,787	+		HGI48_RS05225	0.79	-0.3
1,095,787	+		HGI48_RS05225	0.79	-1.7
1,095,788	-		HGI48_RS05225	0.79	+0.4
1,095,788	-		HGI48_RS05225	0.79	-0.0
1,095,788	-		HGI48_RS05225	0.79	-0.8
1,095,789	+		HGI48_RS05225	0.80	-1.6
1,095,789	+		HGI48_RS05225	0.80	+0.1
1,095,789	+		HGI48_RS05225	0.80	-0.0
1,095,789	+		HGI48_RS05225	0.80	-0.0
1,095,789	+		HGI48_RS05225	0.80	+1.6
1,095,790	-		HGI48_RS05225	0.80	-1.0
1,095,790	-		HGI48_RS05225	0.80	-2.3
1,095,790	-		HGI48_RS05225	0.80	-0.2
1,095,790	-		HGI48_RS05225	0.80	-1.0
1,095,790	-		HGI48_RS05225	0.80	-0.0
1,095,790	-		HGI48_RS05225	0.80	-0.3
1,095,790	-		HGI48_RS05225	0.80	-0.6
1,095,862	+				-2.3
1,095,862	+				+1.3
1,095,862	+				-0.4
1,095,862	+				+0.2
1,095,862	+				+1.0
1,095,862	+				-0.2
1,095,863	-				-0.0
1,095,863	-				+2.6
1,095,863	-				-1.3
1,095,863	-				-1.8
1,095,863	-				-0.1
1,095,865	+				-0.0
1,095,865	+				+0.6
1,095,865	+				-0.7
1,095,866	-				-1.6
1,095,866	-				+1.3
1,095,871	+				+0.1
1,095,944	+				-1.2
1,095,945	-				+0.6
1,095,945	-				+0.4
1,095,945	-				-0.0
1,095,998	+				+1.0
1,095,998	+				-0.0
1,095,999	-				+1.7
1,095,999	-				-1.5
1,095,999	-				+1.0
1,095,999	-				-0.5
1,096,017	+				-0.6
1,096,017	+				-0.0
1,096,017	+				+0.1
1,096,018	-				-1.3
1,096,018	-				-1.0
1,096,018	-				-1.2
1,096,018	-				-1.2
1,096,018	-				-0.8
1,096,019	+				-0.2
1,096,019	+				+1.0
1,096,019	+				-1.0
1,096,019	+				+1.1
1,096,020	-				+1.0
1,096,020	-				-1.8
1,096,020	-				-0.8
1,096,020	-				+1.0
1,096,020	-				-0.6
1,096,020	-				-0.0
1,096,020	-				+1.0
1,096,020	-				-0.9
1,096,281	+		HGI48_RS05230	0.11	-0.6
1,096,281	+		HGI48_RS05230	0.11	+1.1
1,096,281	+		HGI48_RS05230	0.11	+1.2
1,096,281	+		HGI48_RS05230	0.11	-0.7
1,096,282	-		HGI48_RS05230	0.11	-0.7
1,096,370	+		HGI48_RS05230	0.15	+0.2
1,096,370	+		HGI48_RS05230	0.15	+1.2
1,096,371	-		HGI48_RS05230	0.15	+0.2
1,096,371	-		HGI48_RS05230	0.15	-0.1
1,096,371	-				-0.6
1,096,451	+		HGI48_RS05230	0.18	-0.7
1,096,451	+		HGI48_RS05230	0.18	-1.3
1,096,487	-		HGI48_RS05230	0.19	+0.1
1,096,600	-		HGI48_RS05230	0.24	+0.1
1,096,640	+		HGI48_RS05230	0.25	-2.0
1,096,640	+		HGI48_RS05230	0.25	+0.5
1,096,640	+		HGI48_RS05230	0.25	+0.2
1,096,641	-		HGI48_RS05230	0.25	-1.1
1,096,641	-		HGI48_RS05230	0.25	+0.5
1,096,688	+		HGI48_RS05230	0.27	+0.6
1,096,688	+		HGI48_RS05230	0.27	+1.2
1,096,688	+		HGI48_RS05230	0.27	-1.3
1,096,688	+		HGI48_RS05230	0.27	-0.3
1,096,688	+		HGI48_RS05230	0.27	-0.9
1,096,688	+		HGI48_RS05230	0.27	+0.0
1,096,689	-		HGI48_RS05230	0.27	+0.3
1,096,689	-		HGI48_RS05230	0.27	-0.3
1,096,689	-		HGI48_RS05230	0.27	-1.8
1,096,767	+		HGI48_RS05230	0.30	-0.4
1,096,767	+		HGI48_RS05230	0.30	+0.2
1,096,767	+		HGI48_RS05230	0.30	-2.3
1,096,767	+		HGI48_RS05230	0.30	-0.8
1,096,767	+		HGI48_RS05230	0.30	-0.1
1,096,856	+		HGI48_RS05230	0.34	+1.8
1,096,857	-		HGI48_RS05230	0.34	-1.6
1,096,857	-		HGI48_RS05230	0.34	-0.1
1,096,857	-		HGI48_RS05230	0.34	-0.6
1,096,857	-		HGI48_RS05230	0.34	+0.7
1,096,857	-		HGI48_RS05230	0.34	-0.9
1,096,857	-		HGI48_RS05230	0.34	-1.6
1,096,857	-		HGI48_RS05230	0.34	-0.7
1,096,974	-		HGI48_RS05230	0.38	-0.2
1,097,030	+		HGI48_RS05230	0.40	-1.3
1,097,031	-		HGI48_RS05230	0.40	-1.3
1,097,054	+		HGI48_RS05230	0.41	+1.2
1,097,055	-		HGI48_RS05230	0.41	-0.6
1,097,055	-		HGI48_RS05230	0.41	+1.0
1,097,086	+				+0.4
1,097,086	+				-0.6
1,097,086	+		HGI48_RS05230	0.43	-0.6
1,097,086	+				+1.0
1,097,087	-		HGI48_RS05230	0.43	+0.5
1,097,087	-		HGI48_RS05230	0.43	-0.0
1,097,087	-		HGI48_RS05230	0.43	+0.7
1,097,090	+		HGI48_RS05230	0.43	-1.8
1,097,090	+		HGI48_RS05230	0.43	+0.1
1,097,090	+		HGI48_RS05230	0.43	+0.1
1,097,090	+		HGI48_RS05230	0.43	-0.8
1,097,090	+		HGI48_RS05230	0.43	-2.0
1,097,090	+		HGI48_RS05230	0.43	+0.7
1,097,090	+		HGI48_RS05230	0.43	-0.9
1,097,090	+		HGI48_RS05230	0.43	-1.8
1,097,090	+		HGI48_RS05230	0.43	-0.0
1,097,090	+		HGI48_RS05230	0.43	-1.0
1,097,090	+		HGI48_RS05230	0.43	-0.0
1,097,090	+		HGI48_RS05230	0.43	+0.5
1,097,090	+		HGI48_RS05230	0.43	-0.6
1,097,090	+		HGI48_RS05230	0.43	-0.0
1,097,091	-		HGI48_RS05230	0.43	+2.0
1,097,091	-		HGI48_RS05230	0.43	-1.8
1,097,091	-		HGI48_RS05230	0.43	-1.3
1,097,091	-		HGI48_RS05230	0.43	-1.2
1,097,091	-		HGI48_RS05230	0.43	-0.8
1,097,091	-		HGI48_RS05230	0.43	-1.0
1,097,091	-		HGI48_RS05230	0.43	+1.0
1,097,091	-		HGI48_RS05230	0.43	+0.1
1,097,091	-		HGI48_RS05230	0.43	-0.9
1,097,091	-		HGI48_RS05230	0.43	-0.3
1,097,091	-		HGI48_RS05230	0.43	-0.0
1,097,091	-		HGI48_RS05230	0.43	-1.0
1,097,091	-		HGI48_RS05230	0.43	-0.8
1,097,091	-		HGI48_RS05230	0.43	-0.7
1,097,135	+		HGI48_RS05230	0.44	+0.6
1,097,135	+		HGI48_RS05230	0.44	-0.8
1,097,135	+		HGI48_RS05230	0.44	+0.8
1,097,135	+		HGI48_RS05230	0.44	-0.0
1,097,136	-		HGI48_RS05230	0.45	+0.4
1,097,136	-		HGI48_RS05230	0.45	-1.3
1,097,136	-		HGI48_RS05230	0.45	+0.1
1,097,136	-		HGI48_RS05230	0.45	-1.4
1,097,136	-				+1.6
1,097,147	-		HGI48_RS05230	0.45	-0.2
1,097,220	-		HGI48_RS05230	0.48	+0.2
1,097,244	+		HGI48_RS05230	0.49	-1.2
1,097,244	+		HGI48_RS05230	0.49	-0.0
1,097,244	+		HGI48_RS05230	0.49	-1.3
1,097,245	-				-0.6
1,097,245	-				-0.6
1,097,245	-		HGI48_RS05230	0.49	-1.6
1,097,386	+		HGI48_RS05230	0.54	+0.7
1,097,387	-		HGI48_RS05230	0.54	-0.0
1,097,387	-		HGI48_RS05230	0.54	+0.7
1,097,387	-				+0.4
1,097,424	+		HGI48_RS05230	0.56	+0.2
1,097,828	+		HGI48_RS05230	0.72	-0.1
1,098,108	+				+1.0
1,098,108	+				+1.4
1,098,231	+		HGI48_RS05230	0.87	-0.3
1,098,231	+		HGI48_RS05230	0.87	-0.8
1,098,231	+		HGI48_RS05230	0.87	+0.4
1,098,232	-		HGI48_RS05230	0.87	+1.7
1,098,232	-		HGI48_RS05230	0.87	-1.0
1,098,321	-				-1.5
1,098,321	-				-0.6
1,098,360	+				+1.5
1,098,434	+				-1.0
1,098,434	+				-0.8
1,098,434	+				+1.3
1,098,435	-				-1.6
1,098,446	+				-1.0
1,098,446	+				+0.7
1,098,446	+				-0.0
1,098,446	+				+0.1
1,098,446	+				-0.0
1,098,465	-				+0.6
1,098,615	+				+0.6
1,098,658	+				-0.6
1,098,658	+				-2.2
1,098,658	+				-0.3
1,098,658	+				-0.5
1,098,658	+				+3.3
1,098,658	+				+1.3
1,098,659	-				-1.6
1,098,688	+				+1.0
1,098,696	+				-1.8
1,098,697	-				+1.0
1,098,697	-				-0.3
1,098,700	+				+0.6
1,098,700	+				-0.0
1,098,700	+				-0.2
1,098,701	-				-0.7
1,098,705	+				-2.0
1,098,710	+				+0.7
1,098,710	+				-0.3
1,098,711	-				-0.8
1,098,712	+				-1.8
1,098,712	+				+0.4
1,098,712	+				-0.4
1,098,713	-				-0.0
1,098,713	-				-0.8
1,098,769	+				-0.0
1,098,769	+				-0.0
1,098,770	-				-0.0
1,098,804	+				-1.0
1,098,805	-				+0.2
1,098,806	+				-1.2
1,098,807	-				-0.1
1,098,807	-				-0.6
1,098,848	+				+0.6
1,098,932	+				-2.0
1,098,948	+		HGI48_RS05235	0.11	-1.0
1,098,956	+		HGI48_RS05235	0.12	+1.7
1,098,956	+		HGI48_RS05235	0.12	-1.4
1,098,956	+		HGI48_RS05235	0.12	+0.6
1,098,957	-		HGI48_RS05235	0.12	+1.0
1,098,957	-				+1.0
1,098,957	-		HGI48_RS05235	0.12	-0.1
1,098,974	+		HGI48_RS05235	0.13	+0.4
1,098,975	-		HGI48_RS05235	0.13	-1.8
1,098,988	+		HGI48_RS05235	0.14	-0.8
1,099,115	-		HGI48_RS05235	0.24	-0.7
1,099,115	-		HGI48_RS05235	0.24	-1.0
1,099,115	-		HGI48_RS05235	0.24	-1.5
1,099,115	-		HGI48_RS05235	0.24	-0.3
1,099,173	+		HGI48_RS05235	0.28	-1.0
1,099,173	+		HGI48_RS05235	0.28	-1.0
1,099,174	-				+1.4
1,099,187	+		HGI48_RS05235	0.30	+0.2
1,099,188	-		HGI48_RS05235	0.30	+0.2
1,099,242	-		HGI48_RS05235	0.34	+0.8
1,099,272	+		HGI48_RS05235	0.36	+0.4
1,099,273	-				+0.4
1,099,286	+				+1.0
1,099,294	+		HGI48_RS05235	0.38	-1.1
1,099,294	+		HGI48_RS05235	0.38	-2.0
1,099,295	-		HGI48_RS05235	0.38	-0.6
1,099,295	-		HGI48_RS05235	0.38	-1.2
1,099,295	-		HGI48_RS05235	0.38	+0.4
1,099,299	-		HGI48_RS05235	0.38	-0.6
1,099,334	+				-0.0
1,099,335	-		HGI48_RS05235	0.41	-0.1
1,099,343	-		HGI48_RS05235	0.42	+0.6
1,099,375	+		HGI48_RS05235	0.44	+0.2
1,099,414	-		HGI48_RS05235	0.47	+1.5
1,099,414	-				+1.4
1,099,414	-		HGI48_RS05235	0.47	-0.1