Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04530

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04525 and HGI48_RS04530 are separated by 62 nucleotidesHGI48_RS04530 and HGI48_RS04535 are separated by 77 nucleotides HGI48_RS04525: HGI48_RS04525 - FAD-dependent oxidoreductase, at 948,536 to 950,107 _RS04525 HGI48_RS04530: HGI48_RS04530 - FMN-binding protein, at 950,170 to 950,520 _RS04530 HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977 _RS04535 Position (kb) 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 949.194 kb on + strand, within HGI48_RS04525at 949.237 kb on - strand, within HGI48_RS04525at 949.237 kb on - strand, within HGI48_RS04525at 949.237 kb on - strandat 949.237 kb on - strand, within HGI48_RS04525at 949.258 kb on - strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strandat 949.265 kb on + strand, within HGI48_RS04525at 949.265 kb on + strand, within HGI48_RS04525at 949.266 kb on - strand, within HGI48_RS04525at 949.266 kb on - strand, within HGI48_RS04525at 949.266 kb on - strand, within HGI48_RS04525at 949.266 kb on - strand, within HGI48_RS04525at 949.266 kb on - strand, within HGI48_RS04525at 949.266 kb on - strand, within HGI48_RS04525at 949.368 kb on - strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.371 kb on + strand, within HGI48_RS04525at 949.429 kb on + strand, within HGI48_RS04525at 949.437 kb on - strand, within HGI48_RS04525at 949.511 kb on - strand, within HGI48_RS04525at 949.532 kb on - strand, within HGI48_RS04525at 949.578 kb on + strandat 949.647 kb on + strand, within HGI48_RS04525at 949.647 kb on + strand, within HGI48_RS04525at 949.647 kb on + strand, within HGI48_RS04525at 949.647 kb on + strand, within HGI48_RS04525at 949.648 kb on - strand, within HGI48_RS04525at 949.746 kb on + strand, within HGI48_RS04525at 949.747 kb on - strand, within HGI48_RS04525at 949.785 kb on - strand, within HGI48_RS04525at 949.912 kb on + strand, within HGI48_RS04525at 950.002 kb on + strandat 950.073 kb on - strandat 950.073 kb on - strandat 950.073 kb on - strandat 950.073 kb on - strandat 950.107 kb on + strandat 950.107 kb on + strandat 950.107 kb on + strandat 950.107 kb on + strandat 950.107 kb on + strandat 950.110 kb on + strandat 950.110 kb on + strandat 950.110 kb on + strandat 950.111 kb on - strandat 950.127 kb on - strandat 950.374 kb on + strand, within HGI48_RS04530at 950.374 kb on + strand, within HGI48_RS04530at 950.374 kb on + strand, within HGI48_RS04530at 950.374 kb on + strand, within HGI48_RS04530at 950.374 kb on + strand, within HGI48_RS04530at 950.375 kb on - strand, within HGI48_RS04530at 950.375 kb on - strand, within HGI48_RS04530at 950.426 kb on + strandat 950.521 kb on - strandat 950.551 kb on + strandat 950.551 kb on + strandat 950.566 kb on + strandat 950.566 kb on + strandat 950.567 kb on - strandat 950.567 kb on - strandat 950.569 kb on + strandat 950.616 kb on + strandat 950.617 kb on - strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.619 kb on + strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 950.620 kb on - strandat 951.096 kb on - strand, within HGI48_RS04535at 951.197 kb on - strand, within HGI48_RS04535at 951.197 kb on - strand, within HGI48_RS04535at 951.197 kb on - strand, within HGI48_RS04535at 951.197 kb on - strand, within HGI48_RS04535at 951.197 kb on - strand, within HGI48_RS04535at 951.266 kb on - strand, within HGI48_RS04535at 951.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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949,194 + HGI48_RS04525 0.42 -0.6
949,237 - HGI48_RS04525 0.45 +1.2
949,237 - HGI48_RS04525 0.45 -0.6
949,237 - +0.4
949,237 - HGI48_RS04525 0.45 -0.6
949,258 - HGI48_RS04525 0.46 -1.0
949,265 + HGI48_RS04525 0.46 -1.3
949,265 + HGI48_RS04525 0.46 -0.7
949,265 + HGI48_RS04525 0.46 -0.1
949,265 + HGI48_RS04525 0.46 +0.6
949,265 + HGI48_RS04525 0.46 +0.5
949,265 + HGI48_RS04525 0.46 +1.0
949,265 + +1.4
949,265 + HGI48_RS04525 0.46 +2.3
949,265 + HGI48_RS04525 0.46 -2.0
949,266 - HGI48_RS04525 0.46 -0.0
949,266 - HGI48_RS04525 0.46 -0.5
949,266 - HGI48_RS04525 0.46 +0.6
949,266 - HGI48_RS04525 0.46 -0.0
949,266 - HGI48_RS04525 0.46 +1.4
949,266 - HGI48_RS04525 0.46 +0.9
949,368 - HGI48_RS04525 0.53 +1.9
949,371 + HGI48_RS04525 0.53 -1.3
949,371 + HGI48_RS04525 0.53 -1.3
949,371 + HGI48_RS04525 0.53 -1.6
949,371 + HGI48_RS04525 0.53 -0.6
949,371 + HGI48_RS04525 0.53 +0.7
949,371 + HGI48_RS04525 0.53 +0.4
949,371 + HGI48_RS04525 0.53 -0.3
949,371 + HGI48_RS04525 0.53 +0.6
949,371 + HGI48_RS04525 0.53 -0.7
949,429 + HGI48_RS04525 0.57 -0.0
949,437 - HGI48_RS04525 0.57 +0.8
949,511 - HGI48_RS04525 0.62 -0.8
949,532 - HGI48_RS04525 0.63 +1.0
949,578 + -0.6
949,647 + HGI48_RS04525 0.71 -1.0
949,647 + HGI48_RS04525 0.71 +0.4
949,647 + HGI48_RS04525 0.71 -0.2
949,647 + HGI48_RS04525 0.71 +0.6
949,648 - HGI48_RS04525 0.71 -0.0
949,746 + HGI48_RS04525 0.77 -0.0
949,747 - HGI48_RS04525 0.77 -2.1
949,785 - HGI48_RS04525 0.79 +1.6
949,912 + HGI48_RS04525 0.88 +1.0
950,002 + -2.8
950,073 - +0.7
950,073 - +0.1
950,073 - -0.6
950,073 - +0.2
950,107 + -0.6
950,107 + +1.5
950,107 + -3.5
950,107 + +0.4
950,107 + +0.3
950,110 + -0.8
950,110 + -0.3
950,110 + +1.0
950,111 - +1.0
950,127 - +0.7
950,374 + HGI48_RS04530 0.58 -0.0
950,374 + HGI48_RS04530 0.58 +0.6
950,374 + HGI48_RS04530 0.58 +0.6
950,374 + HGI48_RS04530 0.58 -0.4
950,374 + HGI48_RS04530 0.58 -1.3
950,375 - HGI48_RS04530 0.58 -1.0
950,375 - HGI48_RS04530 0.58 -0.3
950,426 + +0.4
950,521 - -1.6
950,551 + -2.3
950,551 + +0.1
950,566 + -1.3
950,566 + -0.0
950,567 - +1.0
950,567 - +0.4
950,569 + -0.9
950,616 + -0.2
950,617 - -1.3
950,619 + -0.0
950,619 + -1.3
950,619 + -1.8
950,619 + +0.3
950,619 + +1.7
950,619 + -1.3
950,619 + -0.6
950,619 + -0.1
950,619 + -0.3
950,620 - -0.6
950,620 - -1.3
950,620 - +0.6
950,620 - -2.2
950,620 - -2.1
950,620 - +0.2
950,620 - +2.0
950,620 - +1.0
950,620 - -1.0
951,096 - HGI48_RS04535 0.36 -2.0
951,197 - HGI48_RS04535 0.43 -2.0
951,197 - HGI48_RS04535 0.43 +0.5
951,197 - HGI48_RS04535 0.43 +0.5
951,197 - HGI48_RS04535 0.43 +0.2
951,197 - HGI48_RS04535 0.43 -1.3
951,266 - HGI48_RS04535 0.48 +0.3
951,332 + -0.0

Or see this region's nucleotide sequence