Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04345 and HGI48_RS04350 are separated by 57 nucleotides HGI48_RS04350 and HGI48_RS04355 overlap by 4 nucleotides
HGI48_RS04345: HGI48_RS04345 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 910,013 to 912,292
_RS04345
HGI48_RS04350: HGI48_RS04350 - YaiI/YqxD family protein, at 912,350 to 912,799
_RS04350
HGI48_RS04355: HGI48_RS04355 - oxygen-dependent coproporphyrinogen oxidase, at 912,796 to 913,734
_RS04355
Position (kb) 912
913 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 911.540 kb on + strand, within HGI48_RS04345 at 911.552 kb on + strand, within HGI48_RS04345 at 911.553 kb on - strand, within HGI48_RS04345 at 911.686 kb on + strand, within HGI48_RS04345 at 911.687 kb on - strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.691 kb on - strand at 911.691 kb on - strand, within HGI48_RS04345 at 911.803 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 912.131 kb on + strand at 912.131 kb on + strand at 912.131 kb on + strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.290 kb on + strand at 912.413 kb on + strand, within HGI48_RS04350 at 912.413 kb on + strand, within HGI48_RS04350 at 912.414 kb on - strand, within HGI48_RS04350 at 912.414 kb on - strand at 912.438 kb on - strand at 912.507 kb on + strand, within HGI48_RS04350 at 912.508 kb on - strand, within HGI48_RS04350 at 912.686 kb on - strand, within HGI48_RS04350 at 912.755 kb on + strand at 912.755 kb on + strand at 912.755 kb on + strand at 912.758 kb on + strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.861 kb on - strand at 913.007 kb on - strand, within HGI48_RS04355 at 913.221 kb on - strand, within HGI48_RS04355 at 913.242 kb on - strand, within HGI48_RS04355 at 913.251 kb on - strand, within HGI48_RS04355 at 913.363 kb on + strand, within HGI48_RS04355 at 913.428 kb on - strand, within HGI48_RS04355 at 913.568 kb on - strand, within HGI48_RS04355 at 913.636 kb on - strand at 913.688 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.745 kb on - strand at 913.772 kb on + strand at 913.772 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.786 kb on - strand at 913.788 kb on + strand at 913.788 kb on + strand at 913.794 kb on + strand at 913.794 kb on + strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 911,540 + HGI48_RS04345 0.67 -0.3 911,552 + HGI48_RS04345 0.68 -2.1 911,553 - HGI48_RS04345 0.68 +1.0 911,686 + HGI48_RS04345 0.73 -0.6 911,687 - HGI48_RS04345 0.73 -1.0 911,690 + HGI48_RS04345 0.74 -1.3 911,690 + HGI48_RS04345 0.74 +0.6 911,690 + HGI48_RS04345 0.74 +0.6 911,690 + +0.4 911,690 + HGI48_RS04345 0.74 -0.2 911,690 + HGI48_RS04345 0.74 -1.1 911,690 + HGI48_RS04345 0.74 +0.2 911,691 - +2.4 911,691 - HGI48_RS04345 0.74 +1.4 911,803 + HGI48_RS04345 0.79 +0.6 911,807 + HGI48_RS04345 0.79 -0.3 911,807 + +0.4 911,807 + HGI48_RS04345 0.79 +0.1 911,807 + HGI48_RS04345 0.79 +0.0 911,807 + HGI48_RS04345 0.79 -1.4 911,808 - HGI48_RS04345 0.79 -1.0 911,808 - HGI48_RS04345 0.79 -1.3 911,808 - HGI48_RS04345 0.79 +0.2 912,131 + -0.3 912,131 + -0.6 912,131 + -0.5 912,132 - +0.4 912,132 - -0.3 912,132 - -0.4 912,132 - +0.3 912,132 - -0.3 912,290 + -1.6 912,413 + HGI48_RS04350 0.14 +0.3 912,413 + HGI48_RS04350 0.14 +1.0 912,414 - HGI48_RS04350 0.14 +0.2 912,414 - +2.0 912,438 - +2.3 912,507 + HGI48_RS04350 0.35 -1.7 912,508 - HGI48_RS04350 0.35 -0.6 912,686 - HGI48_RS04350 0.75 -1.3 912,755 + -1.8 912,755 + -1.0 912,755 + +0.3 912,758 + +0.4 912,759 - -2.0 912,759 - +0.4 912,759 - +0.0 912,759 - -0.2 912,759 - +0.8 912,861 - -2.1 913,007 - HGI48_RS04355 0.22 -0.6 913,221 - HGI48_RS04355 0.45 -0.3 913,242 - HGI48_RS04355 0.47 +1.0 913,251 - HGI48_RS04355 0.48 +1.4 913,363 + HGI48_RS04355 0.60 -0.6 913,428 - HGI48_RS04355 0.67 +0.0 913,568 - HGI48_RS04355 0.82 +1.6 913,636 - -0.6 913,688 - +1.0 913,735 - +0.2 913,735 - -0.8 913,735 - +0.0 913,745 - -0.2 913,772 + +1.4 913,772 + +0.0 913,785 + -0.2 913,785 + -0.1 913,785 + +1.0 913,785 + -2.0 913,786 - -0.7 913,788 + -0.7 913,788 + +2.0 913,794 + +0.0 913,794 + +0.4 913,795 - -1.8 913,795 - +2.9 913,795 - +0.0 913,795 - -1.2 913,795 - -0.2 913,795 - +1.0 913,795 - +0.6 913,797 + +2.2 913,797 + -2.1 913,797 + +1.0 913,797 + -1.8 913,797 + +1.8 913,797 + +0.4 913,797 + -0.2 913,798 - -1.0 913,798 - -0.8 913,798 - +1.2 913,798 - +0.4 913,798 - +0.0 913,798 - -0.7 913,798 - -1.8 913,798 - +0.4
Or see this region's nucleotide sequence