Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04290

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04285 and HGI48_RS04290 are separated by 76 nucleotidesHGI48_RS04290 and HGI48_RS04300 are separated by 598 nucleotides HGI48_RS04285: HGI48_RS04285 - hypothetical protein, at 898,338 to 900,083 _RS04285 HGI48_RS04290: HGI48_RS04290 - tyrosine-type recombinase/integrase, at 900,160 to 901,380 _RS04290 HGI48_RS04300: HGI48_RS04300 - SsrA-binding protein SmpB, at 901,979 to 902,461 _RS04300 Position (kb) 900 901 902Strain fitness (log2 ratio) -2 -1 0 1 2at 899.188 kb on - strandat 899.244 kb on + strandat 899.563 kb on - strand, within HGI48_RS04285at 899.570 kb on - strand, within HGI48_RS04285at 899.681 kb on + strand, within HGI48_RS04285at 899.765 kb on + strand, within HGI48_RS04285at 899.793 kb on + strand, within HGI48_RS04285at 899.826 kb on - strandat 899.829 kb on + strand, within HGI48_RS04285at 899.830 kb on - strand, within HGI48_RS04285at 900.023 kb on + strandat 900.024 kb on - strandat 900.142 kb on - strandat 900.158 kb on + strandat 900.239 kb on + strandat 900.240 kb on - strandat 900.240 kb on - strandat 900.255 kb on - strandat 900.351 kb on + strand, within HGI48_RS04290at 900.351 kb on + strand, within HGI48_RS04290at 900.361 kb on - strand, within HGI48_RS04290at 900.411 kb on + strand, within HGI48_RS04290at 900.429 kb on + strand, within HGI48_RS04290at 900.430 kb on - strand, within HGI48_RS04290at 900.430 kb on - strand, within HGI48_RS04290at 900.504 kb on + strand, within HGI48_RS04290at 900.504 kb on + strand, within HGI48_RS04290at 900.504 kb on + strand, within HGI48_RS04290at 900.505 kb on - strand, within HGI48_RS04290at 900.505 kb on - strand, within HGI48_RS04290at 900.510 kb on + strand, within HGI48_RS04290at 900.511 kb on - strand, within HGI48_RS04290at 900.511 kb on - strand, within HGI48_RS04290at 900.646 kb on + strandat 900.647 kb on - strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strandat 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strandat 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.682 kb on + strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.685 kb on - strand, within HGI48_RS04290at 900.718 kb on + strand, within HGI48_RS04290at 900.718 kb on + strandat 900.719 kb on - strand, within HGI48_RS04290at 900.805 kb on - strand, within HGI48_RS04290at 900.805 kb on - strand, within HGI48_RS04290at 900.805 kb on - strand, within HGI48_RS04290at 900.854 kb on - strand, within HGI48_RS04290at 900.919 kb on - strand, within HGI48_RS04290at 900.933 kb on + strandat 900.933 kb on + strand, within HGI48_RS04290at 900.955 kb on - strandat 900.988 kb on - strand, within HGI48_RS04290at 900.993 kb on + strandat 901.010 kb on - strand, within HGI48_RS04290at 901.148 kb on + strand, within HGI48_RS04290at 901.148 kb on + strand, within HGI48_RS04290at 901.148 kb on + strand, within HGI48_RS04290at 901.149 kb on - strand, within HGI48_RS04290at 901.149 kb on - strand, within HGI48_RS04290at 901.187 kb on + strand, within HGI48_RS04290at 901.188 kb on - strand, within HGI48_RS04290at 901.193 kb on + strandat 901.194 kb on - strand, within HGI48_RS04290at 901.194 kb on - strand, within HGI48_RS04290at 901.194 kb on - strand, within HGI48_RS04290at 901.240 kb on - strand, within HGI48_RS04290at 901.241 kb on + strand, within HGI48_RS04290at 901.242 kb on - strand, within HGI48_RS04290at 901.242 kb on - strand, within HGI48_RS04290at 901.369 kb on + strandat 901.369 kb on + strandat 901.369 kb on + strandat 901.370 kb on - strandat 901.370 kb on - strandat 901.419 kb on + strandat 901.422 kb on + strandat 901.422 kb on + strandat 901.422 kb on + strandat 901.422 kb on + strandat 901.423 kb on - strandat 901.423 kb on - strandat 901.423 kb on - strandat 901.449 kb on + strandat 901.462 kb on + strandat 901.602 kb on + strandat 901.602 kb on + strandat 901.602 kb on + strandat 901.602 kb on + strandat 901.603 kb on - strandat 901.749 kb on + strandat 901.806 kb on + strandat 901.945 kb on - strandat 901.947 kb on - strandat 901.966 kb on - strandat 901.966 kb on - strandat 901.971 kb on - strandat 902.197 kb on + strandat 902.271 kb on + strand, within HGI48_RS04300at 902.271 kb on + strand, within HGI48_RS04300at 902.298 kb on + strand, within HGI48_RS04300at 902.298 kb on + strand, within HGI48_RS04300at 902.298 kb on + strand, within HGI48_RS04300at 902.299 kb on - strandat 902.311 kb on + strand, within HGI48_RS04300

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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899,188 - -0.5
899,244 + +0.5
899,563 - HGI48_RS04285 0.70 -2.1
899,570 - HGI48_RS04285 0.71 +0.1
899,681 + HGI48_RS04285 0.77 +0.8
899,765 + HGI48_RS04285 0.82 +0.7
899,793 + HGI48_RS04285 0.83 -0.3
899,826 - -0.5
899,829 + HGI48_RS04285 0.85 -0.3
899,830 - HGI48_RS04285 0.85 -0.2
900,023 + -0.8
900,024 - -0.2
900,142 - -2.4
900,158 + -1.8
900,239 + -1.8
900,240 - +0.1
900,240 - -1.0
900,255 - -0.5
900,351 + HGI48_RS04290 0.16 -0.5
900,351 + HGI48_RS04290 0.16 +0.3
900,361 - HGI48_RS04290 0.16 +0.0
900,411 + HGI48_RS04290 0.21 -1.4
900,429 + HGI48_RS04290 0.22 +0.6
900,430 - HGI48_RS04290 0.22 +1.4
900,430 - HGI48_RS04290 0.22 +0.6
900,504 + HGI48_RS04290 0.28 -0.1
900,504 + HGI48_RS04290 0.28 -0.2
900,504 + HGI48_RS04290 0.28 -0.7
900,505 - HGI48_RS04290 0.28 -0.3
900,505 - HGI48_RS04290 0.28 -1.8
900,510 + HGI48_RS04290 0.29 -0.1
900,511 - HGI48_RS04290 0.29 +1.4
900,511 - HGI48_RS04290 0.29 -0.9
900,646 + +1.0
900,647 - HGI48_RS04290 0.40 +0.5
900,666 + HGI48_RS04290 0.41 +2.0
900,666 + HGI48_RS04290 0.41 -0.9
900,666 + HGI48_RS04290 0.41 +0.2
900,666 + HGI48_RS04290 0.41 -0.3
900,666 + HGI48_RS04290 0.41 +0.1
900,666 + HGI48_RS04290 0.41 -0.7
900,666 + HGI48_RS04290 0.41 +1.2
900,666 + HGI48_RS04290 0.41 -0.3
900,666 + HGI48_RS04290 0.41 -0.2
900,666 + -0.5
900,666 + HGI48_RS04290 0.41 +0.6
900,666 + HGI48_RS04290 0.41 +0.6
900,667 - HGI48_RS04290 0.42 -1.0
900,667 - HGI48_RS04290 0.42 -0.3
900,667 - HGI48_RS04290 0.42 -0.1
900,667 - HGI48_RS04290 0.42 +0.0
900,667 - +2.6
900,667 - HGI48_RS04290 0.42 +0.5
900,667 - HGI48_RS04290 0.42 -1.3
900,667 - HGI48_RS04290 0.42 +1.6
900,682 + HGI48_RS04290 0.43 -2.1
900,683 - HGI48_RS04290 0.43 +0.4
900,683 - HGI48_RS04290 0.43 -0.4
900,683 - HGI48_RS04290 0.43 -2.5
900,683 - HGI48_RS04290 0.43 -1.0
900,685 - HGI48_RS04290 0.43 +0.9
900,718 + HGI48_RS04290 0.46 -0.5
900,718 + +1.0
900,719 - HGI48_RS04290 0.46 +1.9
900,805 - HGI48_RS04290 0.53 +0.0
900,805 - HGI48_RS04290 0.53 +1.2
900,805 - HGI48_RS04290 0.53 -2.5
900,854 - HGI48_RS04290 0.57 -1.3
900,919 - HGI48_RS04290 0.62 +0.2
900,933 + -0.5
900,933 + HGI48_RS04290 0.63 -1.0
900,955 - +2.6
900,988 - HGI48_RS04290 0.68 -0.8
900,993 + +0.5
901,010 - HGI48_RS04290 0.70 +0.1
901,148 + HGI48_RS04290 0.81 -0.3
901,148 + HGI48_RS04290 0.81 -0.3
901,148 + HGI48_RS04290 0.81 +0.3
901,149 - HGI48_RS04290 0.81 -0.7
901,149 - HGI48_RS04290 0.81 +1.4
901,187 + HGI48_RS04290 0.84 -0.7
901,188 - HGI48_RS04290 0.84 -1.0
901,193 + +1.0
901,194 - HGI48_RS04290 0.85 +1.2
901,194 - HGI48_RS04290 0.85 +0.0
901,194 - HGI48_RS04290 0.85 +1.2
901,240 - HGI48_RS04290 0.88 -0.0
901,241 + HGI48_RS04290 0.89 +0.2
901,242 - HGI48_RS04290 0.89 -0.3
901,242 - HGI48_RS04290 0.89 -0.1
901,369 + -2.0
901,369 + +1.2
901,369 + +0.5
901,370 - +1.0
901,370 - +1.7
901,419 + +0.2
901,422 + -1.3
901,422 + -0.2
901,422 + -0.3
901,422 + -1.1
901,423 - -0.5
901,423 - -0.7
901,423 - -0.3
901,449 + +0.7
901,462 + +1.0
901,602 + +0.7
901,602 + +1.9
901,602 + +1.3
901,602 + +0.8
901,603 - -1.5
901,749 + +1.2
901,806 + +0.6
901,945 - -2.0
901,947 - -0.5
901,966 - -1.0
901,966 - -0.2
901,971 - -1.0
902,197 + -0.5
902,271 + HGI48_RS04300 0.60 -1.3
902,271 + HGI48_RS04300 0.60 -0.5
902,298 + HGI48_RS04300 0.66 -0.3
902,298 + HGI48_RS04300 0.66 -2.0
902,298 + HGI48_RS04300 0.66 +0.0
902,299 - +0.5
902,311 + HGI48_RS04300 0.69 +1.1

Or see this region's nucleotide sequence