Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04235

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotidesHGI48_RS04235 and HGI48_RS04240 are separated by 919 nucleotides HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261 _RS04230 HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343 _RS04235 HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640 _RS04240 Position (kb) 892 893Strain fitness (log2 ratio) -2 -1 0 1 2at 891.144 kb on + strandat 891.144 kb on + strandat 891.145 kb on - strandat 891.171 kb on + strandat 891.214 kb on + strandat 891.215 kb on - strandat 891.215 kb on - strandat 891.656 kb on + strandat 891.657 kb on - strandat 891.657 kb on - strandat 891.657 kb on - strandat 891.657 kb on - strandat 891.668 kb on + strandat 891.685 kb on + strandat 891.686 kb on - strandat 891.686 kb on - strandat 891.729 kb on - strandat 891.756 kb on + strandat 891.858 kb on + strandat 891.859 kb on - strandat 891.888 kb on + strandat 891.902 kb on - strandat 891.911 kb on + strandat 891.939 kb on - strandat 892.108 kb on + strandat 892.108 kb on + strandat 892.108 kb on + strandat 892.352 kb on - strandat 892.506 kb on - strandat 892.793 kb on + strandat 892.810 kb on + strandat 892.868 kb on + strandat 892.919 kb on - strandat 893.001 kb on + strandat 893.138 kb on - strandat 893.242 kb on + strandat 893.310 kb on + strand, within HGI48_RS04240at 893.313 kb on - strand, within HGI48_RS04240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
891,144 + -0.0
891,144 + -1.0
891,145 - +0.6
891,171 + -1.0
891,214 + -2.0
891,215 - +0.7
891,215 - +0.0
891,656 + +1.2
891,657 - -0.8
891,657 - +1.3
891,657 - +0.2
891,657 - -1.0
891,668 + -1.2
891,685 + +1.5
891,686 - -1.3
891,686 - +2.6
891,729 - -0.3
891,756 + -1.0
891,858 + +1.0
891,859 - -1.8
891,888 + +0.5
891,902 - +1.0
891,911 + -2.1
891,939 - +0.1
892,108 + +1.5
892,108 + +1.8
892,108 + -1.0
892,352 - -1.8
892,506 - -1.2
892,793 + +0.3
892,810 + +0.9
892,868 + -1.3
892,919 - -0.5
893,001 + +0.5
893,138 - +0.0
893,242 + -2.1
893,310 + HGI48_RS04240 0.12 +0.7
893,313 - HGI48_RS04240 0.13 +1.0

Or see this region's nucleotide sequence