Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03580 and HGI48_RS03585 are separated by 763 nucleotides HGI48_RS03585 and HGI48_RS03590 are separated by 648 nucleotides
HGI48_RS03580: HGI48_RS03580 - acetate--CoA ligase, at 756,087 to 758,048
_RS03580
HGI48_RS03585: HGI48_RS03585 - hypothetical protein, at 758,812 to 759,204
_RS03585
HGI48_RS03590: HGI48_RS03590 - hypothetical protein, at 759,853 to 760,047
_RS03590
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 757.824 kb on + strand, within HGI48_RS03580 at 757.824 kb on + strand, within HGI48_RS03580 at 757.824 kb on + strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand at 757.825 kb on - strand, within HGI48_RS03580 at 757.850 kb on + strand, within HGI48_RS03580 at 757.940 kb on + strand at 757.941 kb on - strand at 757.953 kb on + strand at 757.953 kb on + strand at 757.966 kb on + strand at 757.978 kb on + strand at 757.978 kb on + strand at 757.978 kb on + strand at 757.979 kb on - strand at 757.979 kb on - strand at 758.024 kb on + strand at 758.024 kb on + strand at 758.024 kb on + strand at 758.025 kb on - strand at 758.033 kb on + strand at 758.034 kb on - strand at 758.034 kb on - strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.039 kb on - strand at 758.074 kb on + strand at 758.074 kb on + strand at 758.078 kb on - strand at 758.096 kb on + strand at 758.097 kb on - strand at 758.175 kb on + strand at 758.175 kb on + strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.241 kb on + strand at 758.284 kb on + strand at 758.284 kb on + strand at 758.284 kb on + strand at 758.301 kb on + strand at 758.302 kb on - strand at 758.332 kb on + strand at 758.332 kb on + strand at 758.336 kb on + strand at 758.343 kb on - strand at 758.364 kb on + strand at 758.365 kb on - strand at 758.392 kb on + strand at 758.392 kb on + strand at 758.393 kb on - strand at 758.424 kb on + strand at 758.424 kb on + strand at 758.425 kb on - strand at 758.425 kb on - strand at 758.425 kb on - strand at 758.426 kb on + strand at 758.426 kb on + strand at 758.427 kb on - strand at 758.427 kb on - strand at 758.427 kb on - strand at 758.457 kb on + strand at 758.457 kb on + strand at 758.457 kb on + strand at 758.458 kb on - strand at 758.458 kb on - strand at 758.458 kb on - strand at 758.523 kb on + strand at 758.531 kb on + strand at 758.535 kb on + strand at 758.536 kb on - strand at 758.573 kb on - strand at 758.578 kb on - strand at 758.587 kb on + strand at 758.588 kb on - strand at 758.588 kb on - strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.594 kb on + strand at 758.594 kb on + strand at 758.595 kb on - strand at 758.595 kb on - strand at 758.612 kb on + strand at 758.613 kb on - strand at 758.613 kb on - strand at 758.615 kb on + strand at 758.629 kb on - strand at 758.709 kb on + strand at 758.709 kb on + strand at 758.714 kb on + strand at 758.728 kb on + strand at 758.728 kb on + strand at 758.781 kb on + strand at 758.792 kb on + strand at 758.793 kb on - strand at 758.811 kb on + strand at 758.812 kb on - strand at 758.812 kb on - strand at 758.812 kb on - strand at 758.847 kb on + strand at 758.874 kb on + strand, within HGI48_RS03585 at 758.874 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.934 kb on + strand, within HGI48_RS03585 at 758.935 kb on - strand, within HGI48_RS03585 at 758.935 kb on - strand, within HGI48_RS03585 at 759.071 kb on + strand, within HGI48_RS03585 at 759.072 kb on - strand, within HGI48_RS03585 at 759.072 kb on - strand, within HGI48_RS03585 at 759.072 kb on - strand at 759.105 kb on + strand at 759.105 kb on + strand, within HGI48_RS03585 at 759.105 kb on + strand, within HGI48_RS03585 at 759.155 kb on + strand, within HGI48_RS03585 at 759.155 kb on + strand, within HGI48_RS03585 at 759.223 kb on + strand at 759.224 kb on - strand at 759.237 kb on - strand at 759.237 kb on - strand at 759.253 kb on + strand at 759.281 kb on + strand at 759.282 kb on - strand at 759.284 kb on + strand at 759.294 kb on - strand at 759.294 kb on - strand at 759.294 kb on - strand at 759.333 kb on + strand at 759.373 kb on - strand at 759.376 kb on - strand at 759.391 kb on - strand at 759.409 kb on + strand at 759.410 kb on - strand at 759.410 kb on - strand at 759.424 kb on + strand at 759.427 kb on - strand at 759.436 kb on + strand at 759.436 kb on + strand at 759.436 kb on + strand at 759.437 kb on - strand at 759.589 kb on - strand at 759.598 kb on + strand at 759.598 kb on + strand at 759.599 kb on - strand at 759.603 kb on + strand at 759.603 kb on + strand at 759.604 kb on - strand at 759.604 kb on - strand at 759.607 kb on + strand at 759.607 kb on + strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.985 kb on + strand, within HGI48_RS03590 at 759.985 kb on + strand, within HGI48_RS03590 at 759.985 kb on + strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 760.000 kb on - strand, within HGI48_RS03590 at 760.000 kb on - strand, within HGI48_RS03590 at 760.015 kb on + strand, within HGI48_RS03590 at 760.043 kb on + strand at 760.043 kb on + strand at 760.044 kb on - strand at 760.044 kb on - strand at 760.050 kb on + strand at 760.050 kb on + strand at 760.059 kb on + strand at 760.062 kb on + strand at 760.063 kb on - strand at 760.063 kb on - strand at 760.117 kb on + strand at 760.117 kb on + strand at 760.117 kb on + strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.124 kb on + strand at 760.124 kb on + strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.135 kb on + strand at 760.136 kb on - strand at 760.182 kb on + strand at 760.183 kb on - strand at 760.190 kb on + strand at 760.190 kb on + strand at 760.190 kb on + strand at 760.191 kb on - strand at 760.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 757,824 + HGI48_RS03580 0.89 -0.3 757,824 + HGI48_RS03580 0.89 -1.5 757,824 + HGI48_RS03580 0.89 -1.3 757,825 - HGI48_RS03580 0.89 -0.5 757,825 - HGI48_RS03580 0.89 -1.2 757,825 - HGI48_RS03580 0.89 -0.7 757,825 - HGI48_RS03580 0.89 -0.0 757,825 - +0.1 757,825 - HGI48_RS03580 0.89 +0.3 757,850 + HGI48_RS03580 0.90 +0.3 757,940 + -0.0 757,941 - -0.8 757,953 + +0.6 757,953 + -1.5 757,966 + -0.5 757,978 + +1.8 757,978 + +2.5 757,978 + +0.6 757,979 - -1.9 757,979 - -0.5 758,024 + -0.5 758,024 + +0.5 758,024 + -1.5 758,025 - -0.4 758,033 + -2.4 758,034 - -0.1 758,034 - +0.2 758,036 + +0.3 758,036 + -0.7 758,036 + +0.4 758,036 + +0.2 758,036 + -1.1 758,037 - -2.1 758,037 - -0.6 758,037 - +0.2 758,037 - -0.3 758,037 - -0.7 758,039 - -0.2 758,074 + +1.3 758,074 + +2.1 758,078 - -0.4 758,096 + +0.2 758,097 - -1.0 758,175 + +1.1 758,175 + -0.9 758,195 + +0.4 758,195 + -0.0 758,207 + +1.7 758,207 + -0.9 758,207 + -0.1 758,207 + -0.2 758,207 + +0.3 758,207 + -0.3 758,207 + -2.7 758,207 + +1.0 758,207 + +0.8 758,207 + +1.0 758,207 + +0.1 758,208 - -0.1 758,208 - -1.9 758,208 - -1.1 758,208 - +0.7 758,208 - -2.4 758,241 + +0.3 758,284 + -2.9 758,284 + -0.3 758,284 + -0.9 758,301 + +1.3 758,302 - +0.1 758,332 + +1.5 758,332 + -2.1 758,336 + +1.1 758,343 - +0.5 758,364 + +3.2 758,365 - -2.5 758,392 + +1.7 758,392 + -0.3 758,393 - +0.1 758,424 + +0.9 758,424 + -0.5 758,425 - -0.8 758,425 - -0.8 758,425 - +0.3 758,426 + +1.8 758,426 + -1.2 758,427 - -0.4 758,427 - -0.5 758,427 - +0.1 758,457 + -0.2 758,457 + +1.1 758,457 + +1.9 758,458 - +0.1 758,458 - -0.3 758,458 - +0.7 758,523 + -0.2 758,531 + -0.3 758,535 + +0.3 758,536 - -0.9 758,573 - -1.5 758,578 - -0.9 758,587 + +0.5 758,588 - -0.9 758,588 - -0.9 758,590 + -0.9 758,590 + -0.9 758,590 + -1.7 758,590 + -0.2 758,590 + +1.1 758,594 + +0.3 758,594 + +0.9 758,595 - +1.4 758,595 - -1.7 758,612 + +0.4 758,613 - +1.9 758,613 - -0.5 758,615 + +0.3 758,629 - -1.8 758,709 + -0.4 758,709 + -2.0 758,714 + +0.7 758,728 + +0.8 758,728 + +0.7 758,781 + -3.2 758,792 + -0.5 758,793 - -0.2 758,811 + +0.7 758,812 - +3.6 758,812 - -0.1 758,812 - -0.2 758,847 + -0.0 758,874 + HGI48_RS03585 0.16 +1.4 758,874 + HGI48_RS03585 0.16 -1.9 758,912 + HGI48_RS03585 0.25 -1.2 758,912 + HGI48_RS03585 0.25 -0.0 758,912 + HGI48_RS03585 0.25 +1.7 758,912 + HGI48_RS03585 0.25 -1.5 758,934 + HGI48_RS03585 0.31 +0.4 758,935 - HGI48_RS03585 0.31 -0.9 758,935 - HGI48_RS03585 0.31 -0.9 759,071 + HGI48_RS03585 0.66 -0.5 759,072 - HGI48_RS03585 0.66 -0.2 759,072 - HGI48_RS03585 0.66 -1.2 759,072 - +0.5 759,105 + +1.1 759,105 + HGI48_RS03585 0.75 +0.8 759,105 + HGI48_RS03585 0.75 -0.1 759,155 + HGI48_RS03585 0.87 +0.9 759,155 + HGI48_RS03585 0.87 +0.6 759,223 + -0.9 759,224 - +0.3 759,237 - +0.1 759,237 - +0.3 759,253 + +1.2 759,281 + +0.1 759,282 - -0.3 759,284 + -0.3 759,294 - -0.3 759,294 - +0.2 759,294 - -0.7 759,333 + -0.9 759,373 - +0.3 759,376 - +0.1 759,391 - +0.7 759,409 + +1.1 759,410 - +1.1 759,410 - -1.5 759,424 + -0.2 759,427 - -2.1 759,436 + +0.1 759,436 + +1.3 759,436 + +2.7 759,437 - +1.1 759,589 - +1.1 759,598 + +1.5 759,598 + -1.5 759,599 - -0.2 759,603 + -0.2 759,603 + +1.3 759,604 - -1.7 759,604 - +0.1 759,607 + +2.3 759,607 + +0.3 759,608 - +1.1 759,608 - +2.1 759,608 - -0.2 759,985 + HGI48_RS03590 0.68 -1.7 759,985 + HGI48_RS03590 0.68 -0.9 759,985 + HGI48_RS03590 0.68 -0.5 759,986 - HGI48_RS03590 0.68 -0.1 759,986 - +0.5 759,986 - HGI48_RS03590 0.68 +0.9 759,986 - HGI48_RS03590 0.68 +1.1 759,986 - HGI48_RS03590 0.68 -0.3 760,000 - HGI48_RS03590 0.75 -0.3 760,000 - HGI48_RS03590 0.75 +0.1 760,015 + HGI48_RS03590 0.83 -0.1 760,043 + -1.5 760,043 + -1.2 760,044 - +2.0 760,044 - +0.3 760,050 + -0.0 760,050 + +0.5 760,059 + -2.5 760,062 + +0.4 760,063 - -0.5 760,063 - -0.3 760,117 + -2.1 760,117 + +1.1 760,117 + -0.7 760,118 - -0.7 760,118 - +1.0 760,118 - +0.3 760,118 - +0.5 760,118 - +1.1 760,118 - -1.5 760,120 - +0.5 760,120 - +0.5 760,120 - +0.2 760,120 - +0.2 760,124 + +1.9 760,124 + -0.4 760,125 - -0.3 760,125 - -0.5 760,125 - -0.9 760,125 - +0.5 760,135 + -1.9 760,136 - -1.1 760,182 + -0.2 760,183 - +0.8 760,190 + +0.9 760,190 + +1.2 760,190 + +1.7 760,191 - -1.2 760,191 - -1.2
Or see this region's nucleotide sequence