Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02495

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02490 and HGI48_RS02495 are separated by 138 nucleotidesHGI48_RS02495 and HGI48_RS02500 are separated by 17 nucleotides HGI48_RS02490: HGI48_RS02490 - LysR family transcriptional regulator, at 537,600 to 538,538 _RS02490 HGI48_RS02495: HGI48_RS02495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 538,677 to 539,711 _RS02495 HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751 _RS02500 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2at 537.678 kb on + strandat 537.678 kb on + strandat 537.794 kb on + strand, within HGI48_RS02490at 537.794 kb on + strand, within HGI48_RS02490at 537.796 kb on + strand, within HGI48_RS02490at 537.900 kb on - strand, within HGI48_RS02490at 537.910 kb on + strand, within HGI48_RS02490at 537.911 kb on - strand, within HGI48_RS02490at 537.911 kb on - strand, within HGI48_RS02490at 537.911 kb on - strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.139 kb on + strand, within HGI48_RS02490at 538.140 kb on - strand, within HGI48_RS02490at 538.158 kb on - strand, within HGI48_RS02490at 538.213 kb on - strand, within HGI48_RS02490at 538.309 kb on + strand, within HGI48_RS02490at 538.309 kb on + strand, within HGI48_RS02490at 538.309 kb on + strand, within HGI48_RS02490at 538.310 kb on - strand, within HGI48_RS02490at 538.340 kb on - strand, within HGI48_RS02490at 538.340 kb on - strandat 538.552 kb on - strandat 538.587 kb on - strandat 538.587 kb on - strandat 538.617 kb on + strandat 538.617 kb on + strandat 538.618 kb on - strandat 538.618 kb on - strandat 538.618 kb on - strandat 538.643 kb on + strandat 538.646 kb on - strandat 538.646 kb on - strandat 538.646 kb on - strandat 538.646 kb on - strandat 538.646 kb on - strandat 538.862 kb on + strand, within HGI48_RS02495at 538.862 kb on + strand, within HGI48_RS02495at 538.863 kb on - strand, within HGI48_RS02495at 538.863 kb on - strand, within HGI48_RS02495at 539.040 kb on + strand, within HGI48_RS02495at 539.198 kb on - strand, within HGI48_RS02495at 539.226 kb on - strand, within HGI48_RS02495at 539.301 kb on + strand, within HGI48_RS02495at 539.301 kb on + strand, within HGI48_RS02495at 539.302 kb on - strand, within HGI48_RS02495at 539.302 kb on - strand, within HGI48_RS02495at 539.396 kb on + strand, within HGI48_RS02495at 539.688 kb on + strandat 539.770 kb on + strandat 539.770 kb on + strandat 539.838 kb on + strand, within HGI48_RS02500at 539.838 kb on + strand, within HGI48_RS02500at 539.839 kb on - strand, within HGI48_RS02500at 539.839 kb on - strand, within HGI48_RS02500at 539.913 kb on + strand, within HGI48_RS02500at 539.972 kb on + strand, within HGI48_RS02500at 539.973 kb on - strand, within HGI48_RS02500at 539.973 kb on - strand, within HGI48_RS02500at 539.973 kb on - strandat 540.021 kb on - strand, within HGI48_RS02500at 540.024 kb on + strand, within HGI48_RS02500at 540.024 kb on + strandat 540.024 kb on + strandat 540.024 kb on + strand, within HGI48_RS02500at 540.024 kb on + strand, within HGI48_RS02500at 540.025 kb on - strandat 540.025 kb on - strand, within HGI48_RS02500at 540.059 kb on - strand, within HGI48_RS02500at 540.083 kb on - strand, within HGI48_RS02500at 540.083 kb on - strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.194 kb on + strand, within HGI48_RS02500at 540.195 kb on - strand, within HGI48_RS02500at 540.195 kb on - strand, within HGI48_RS02500at 540.350 kb on + strand, within HGI48_RS02500at 540.350 kb on + strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.351 kb on - strand, within HGI48_RS02500at 540.518 kb on - strand, within HGI48_RS02500at 540.637 kb on + strandat 540.638 kb on - strand, within HGI48_RS02500at 540.638 kb on - strand, within HGI48_RS02500

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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537,678 + +0.7
537,678 + -0.6
537,794 + HGI48_RS02490 0.21 -0.4
537,794 + HGI48_RS02490 0.21 -0.2
537,796 + HGI48_RS02490 0.21 -1.3
537,900 - HGI48_RS02490 0.32 -0.1
537,910 + HGI48_RS02490 0.33 -0.9
537,911 - HGI48_RS02490 0.33 -0.6
537,911 - HGI48_RS02490 0.33 -1.9
537,911 - HGI48_RS02490 0.33 -0.1
538,139 + HGI48_RS02490 0.57 +0.2
538,139 + HGI48_RS02490 0.57 +0.1
538,139 + HGI48_RS02490 0.57 -1.0
538,139 + HGI48_RS02490 0.57 +0.1
538,139 + HGI48_RS02490 0.57 -2.2
538,139 + HGI48_RS02490 0.57 -0.2
538,139 + HGI48_RS02490 0.57 +0.3
538,140 - HGI48_RS02490 0.58 +0.1
538,158 - HGI48_RS02490 0.59 -0.4
538,213 - HGI48_RS02490 0.65 -1.4
538,309 + HGI48_RS02490 0.76 +0.6
538,309 + HGI48_RS02490 0.76 -0.0
538,309 + HGI48_RS02490 0.76 +1.3
538,310 - HGI48_RS02490 0.76 -2.2
538,340 - HGI48_RS02490 0.79 +0.9
538,340 - +1.6
538,552 - -0.4
538,587 - +0.7
538,587 - +0.7
538,617 + -0.9
538,617 + -2.2
538,618 - -0.9
538,618 - -2.2
538,618 - +1.6
538,643 + +0.1
538,646 - +1.1
538,646 - +1.1
538,646 - +0.9
538,646 - +0.9
538,646 - -1.9
538,862 + HGI48_RS02495 0.18 +0.3
538,862 + HGI48_RS02495 0.18 +0.1
538,863 - HGI48_RS02495 0.18 -1.9
538,863 - HGI48_RS02495 0.18 +0.6
539,040 + HGI48_RS02495 0.35 +1.4
539,198 - HGI48_RS02495 0.50 -0.0
539,226 - HGI48_RS02495 0.53 +1.4
539,301 + HGI48_RS02495 0.60 -2.0
539,301 + HGI48_RS02495 0.60 +0.4
539,302 - HGI48_RS02495 0.60 +2.1
539,302 - HGI48_RS02495 0.60 +0.7
539,396 + HGI48_RS02495 0.69 +0.7
539,688 + +0.7
539,770 + -0.4
539,770 + +1.6
539,838 + HGI48_RS02500 0.11 -1.2
539,838 + HGI48_RS02500 0.11 -1.7
539,839 - HGI48_RS02500 0.11 -0.0
539,839 - HGI48_RS02500 0.11 -0.9
539,913 + HGI48_RS02500 0.18 +0.1
539,972 + HGI48_RS02500 0.24 -1.2
539,973 - HGI48_RS02500 0.24 -2.6
539,973 - HGI48_RS02500 0.24 +1.1
539,973 - +1.1
540,021 - HGI48_RS02500 0.29 -0.9
540,024 + HGI48_RS02500 0.29 -0.2
540,024 + -0.4
540,024 + +1.6
540,024 + HGI48_RS02500 0.29 +0.1
540,024 + HGI48_RS02500 0.29 -0.8
540,025 - +0.6
540,025 - HGI48_RS02500 0.29 +0.2
540,059 - HGI48_RS02500 0.32 +0.9
540,083 - HGI48_RS02500 0.35 -0.1
540,083 - HGI48_RS02500 0.35 +0.9
540,194 + HGI48_RS02500 0.45 -1.8
540,194 + HGI48_RS02500 0.45 +0.0
540,194 + HGI48_RS02500 0.45 +0.8
540,194 + HGI48_RS02500 0.45 -0.2
540,195 - HGI48_RS02500 0.46 -0.9
540,195 - HGI48_RS02500 0.46 -1.4
540,350 + HGI48_RS02500 0.61 +1.1
540,350 + HGI48_RS02500 0.61 +0.2
540,351 - HGI48_RS02500 0.61 -1.0
540,351 - HGI48_RS02500 0.61 +0.7
540,351 - HGI48_RS02500 0.61 +0.4
540,351 - HGI48_RS02500 0.61 +1.1
540,518 - HGI48_RS02500 0.77 -0.3
540,637 + -0.4
540,638 - HGI48_RS02500 0.89 +1.8
540,638 - HGI48_RS02500 0.89 +0.1

Or see this region's nucleotide sequence