Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02420 and HGI48_RS02425 are separated by 95 nucleotides HGI48_RS02425 and HGI48_RS02430 are separated by 389 nucleotides
HGI48_RS02420: HGI48_RS02420 - 4'-phosphopantetheinyl transferase superfamily protein, at 523,975 to 524,694
_RS02420
HGI48_RS02425: HGI48_RS02425 - SDR family oxidoreductase, at 524,790 to 525,554
_RS02425
HGI48_RS02430: HGI48_RS02430 - Tar ligand binding domain-containing protein, at 525,944 to 527,662
_RS02430
Position (kb) 524
525
526 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 523.796 kb on + strand at 523.918 kb on + strand at 523.918 kb on + strand at 523.918 kb on + strand at 523.918 kb on + strand at 523.918 kb on + strand at 523.918 kb on + strand at 523.918 kb on + strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.919 kb on - strand at 523.922 kb on + strand at 523.990 kb on - strand at 524.031 kb on + strand at 524.031 kb on + strand at 524.031 kb on + strand at 524.032 kb on - strand at 524.041 kb on + strand at 524.041 kb on + strand at 524.041 kb on + strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.042 kb on - strand at 524.164 kb on + strand, within HGI48_RS02420 at 524.165 kb on - strand, within HGI48_RS02420 at 524.180 kb on - strand, within HGI48_RS02420 at 524.221 kb on + strand, within HGI48_RS02420 at 524.221 kb on + strand, within HGI48_RS02420 at 524.221 kb on + strand at 524.221 kb on + strand, within HGI48_RS02420 at 524.221 kb on + strand, within HGI48_RS02420 at 524.221 kb on + strand, within HGI48_RS02420 at 524.221 kb on + strand at 524.221 kb on + strand, within HGI48_RS02420 at 524.221 kb on + strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand, within HGI48_RS02420 at 524.222 kb on - strand at 524.388 kb on + strand, within HGI48_RS02420 at 524.388 kb on + strand, within HGI48_RS02420 at 524.389 kb on - strand, within HGI48_RS02420 at 524.423 kb on - strand, within HGI48_RS02420 at 524.423 kb on - strand, within HGI48_RS02420 at 524.500 kb on + strand at 524.500 kb on + strand, within HGI48_RS02420 at 524.500 kb on + strand, within HGI48_RS02420 at 524.500 kb on + strand, within HGI48_RS02420 at 524.500 kb on + strand, within HGI48_RS02420 at 524.522 kb on + strand, within HGI48_RS02420 at 524.573 kb on + strand, within HGI48_RS02420 at 524.573 kb on + strand, within HGI48_RS02420 at 524.574 kb on - strand, within HGI48_RS02420 at 524.574 kb on - strand, within HGI48_RS02420 at 524.574 kb on - strand, within HGI48_RS02420 at 524.574 kb on - strand, within HGI48_RS02420 at 524.621 kb on - strand, within HGI48_RS02420 at 524.650 kb on + strand at 524.650 kb on + strand at 524.650 kb on + strand at 524.650 kb on + strand at 524.651 kb on - strand at 524.651 kb on - strand at 524.651 kb on - strand at 524.651 kb on - strand at 524.651 kb on - strand at 524.684 kb on + strand at 524.684 kb on + strand at 524.684 kb on + strand at 524.685 kb on - strand at 524.697 kb on + strand at 524.697 kb on + strand at 524.697 kb on + strand at 524.698 kb on - strand at 524.698 kb on - strand at 524.698 kb on - strand at 524.698 kb on - strand at 524.698 kb on - strand at 524.698 kb on - strand at 524.698 kb on - strand at 524.707 kb on - strand at 524.710 kb on + strand at 524.710 kb on + strand at 524.710 kb on + strand at 524.711 kb on - strand at 524.711 kb on - strand at 524.711 kb on - strand at 524.719 kb on + strand at 524.719 kb on + strand at 524.723 kb on + strand at 524.723 kb on + strand at 524.723 kb on + strand at 524.723 kb on + strand at 524.724 kb on - strand at 524.724 kb on - strand at 524.724 kb on - strand at 524.724 kb on - strand at 524.733 kb on - strand at 524.745 kb on + strand at 525.228 kb on - strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.238 kb on - strand, within HGI48_RS02425 at 525.238 kb on - strand, within HGI48_RS02425 at 525.267 kb on + strand, within HGI48_RS02425 at 525.267 kb on + strand, within HGI48_RS02425 at 525.268 kb on - strand, within HGI48_RS02425 at 525.366 kb on + strand, within HGI48_RS02425 at 525.366 kb on + strand, within HGI48_RS02425 at 525.498 kb on + strand at 525.557 kb on - strand at 525.578 kb on + strand at 525.579 kb on - strand at 525.579 kb on - strand at 525.582 kb on + strand at 525.582 kb on + strand at 525.651 kb on - strand at 525.655 kb on + strand at 525.655 kb on + strand at 525.655 kb on + strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.668 kb on + strand at 525.668 kb on + strand at 525.688 kb on - strand at 525.848 kb on + strand at 525.853 kb on + strand at 525.906 kb on - strand at 525.918 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.950 kb on - strand at 525.950 kb on - strand at 526.105 kb on + strand at 526.105 kb on + strand at 526.106 kb on - strand at 526.151 kb on - strand at 526.151 kb on - strand, within HGI48_RS02430 at 526.308 kb on + strand, within HGI48_RS02430 at 526.309 kb on - strand, within HGI48_RS02430 at 526.309 kb on - strand, within HGI48_RS02430 at 526.355 kb on + strand, within HGI48_RS02430 at 526.365 kb on - strand at 526.365 kb on - strand, within HGI48_RS02430 at 526.365 kb on - strand, within HGI48_RS02430 at 526.372 kb on + strand, within HGI48_RS02430 at 526.373 kb on - strand, within HGI48_RS02430 at 526.454 kb on - strand at 526.469 kb on + strand, within HGI48_RS02430 at 526.469 kb on + strand at 526.469 kb on + strand at 526.470 kb on - strand, within HGI48_RS02430 at 526.470 kb on - strand, within HGI48_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 523,796 + +0.4 523,918 + -1.7 523,918 + +1.9 523,918 + -0.6 523,918 + +0.1 523,918 + +0.7 523,918 + -0.4 523,918 + +1.0 523,919 - +0.6 523,919 - -0.4 523,919 - +0.5 523,919 - -2.0 523,919 - -0.8 523,919 - +5.1 523,919 - -0.1 523,919 - +0.6 523,919 - -0.9 523,922 + -0.1 523,990 - -0.1 524,031 + -0.4 524,031 + -1.9 524,031 + -0.4 524,032 - -0.4 524,041 + +1.1 524,041 + +1.1 524,041 + -0.3 524,042 - +0.2 524,042 - +0.5 524,042 - +0.9 524,042 - -0.3 524,042 - +0.1 524,042 - -0.6 524,042 - -0.9 524,042 - +1.7 524,164 + HGI48_RS02420 0.26 +0.6 524,165 - HGI48_RS02420 0.26 -1.4 524,180 - HGI48_RS02420 0.28 +1.3 524,221 + HGI48_RS02420 0.34 +0.9 524,221 + HGI48_RS02420 0.34 -1.4 524,221 + -0.4 524,221 + HGI48_RS02420 0.34 -0.0 524,221 + HGI48_RS02420 0.34 -1.3 524,221 + HGI48_RS02420 0.34 -0.0 524,221 + +1.7 524,221 + HGI48_RS02420 0.34 -1.9 524,221 + HGI48_RS02420 0.34 -0.7 524,222 - HGI48_RS02420 0.34 -1.7 524,222 - HGI48_RS02420 0.34 -0.3 524,222 - HGI48_RS02420 0.34 -1.4 524,222 - HGI48_RS02420 0.34 -0.9 524,222 - HGI48_RS02420 0.34 -0.7 524,222 - HGI48_RS02420 0.34 -0.4 524,222 - HGI48_RS02420 0.34 -0.9 524,222 - +1.1 524,388 + HGI48_RS02420 0.57 +0.5 524,388 + HGI48_RS02420 0.57 -0.7 524,389 - HGI48_RS02420 0.57 -1.4 524,423 - HGI48_RS02420 0.62 -0.2 524,423 - HGI48_RS02420 0.62 +0.0 524,500 + +0.6 524,500 + HGI48_RS02420 0.73 -0.2 524,500 + HGI48_RS02420 0.73 -0.3 524,500 + HGI48_RS02420 0.73 +0.4 524,500 + HGI48_RS02420 0.73 -0.7 524,522 + HGI48_RS02420 0.76 -0.2 524,573 + HGI48_RS02420 0.83 +0.5 524,573 + HGI48_RS02420 0.83 -0.4 524,574 - HGI48_RS02420 0.83 +1.4 524,574 - HGI48_RS02420 0.83 +0.1 524,574 - HGI48_RS02420 0.83 -0.7 524,574 - HGI48_RS02420 0.83 +0.8 524,621 - HGI48_RS02420 0.90 +0.5 524,650 + +1.1 524,650 + -0.4 524,650 + -0.2 524,650 + +0.0 524,651 - +1.6 524,651 - -0.2 524,651 - +0.8 524,651 - -0.4 524,651 - +0.6 524,684 + -1.4 524,684 + -0.9 524,684 + +0.4 524,685 - +0.6 524,697 + +3.1 524,697 + -0.3 524,697 + -2.2 524,698 - -1.2 524,698 - -0.9 524,698 - -0.9 524,698 - +0.6 524,698 - -0.2 524,698 - -0.2 524,698 - +0.6 524,707 - +1.6 524,710 + -0.3 524,710 + +0.6 524,710 + +1.1 524,711 - +0.1 524,711 - -0.1 524,711 - -0.2 524,719 + +1.1 524,719 + +1.1 524,723 + -1.2 524,723 + -0.2 524,723 + +0.4 524,723 + +0.1 524,724 - +0.6 524,724 - -1.2 524,724 - -0.4 524,724 - -0.4 524,733 - -1.9 524,745 + +0.0 525,228 - HGI48_RS02425 0.57 -0.9 525,237 + HGI48_RS02425 0.58 +0.7 525,237 + HGI48_RS02425 0.58 -2.7 525,237 + HGI48_RS02425 0.58 -1.2 525,237 + HGI48_RS02425 0.58 +0.0 525,237 + HGI48_RS02425 0.58 -0.9 525,237 + HGI48_RS02425 0.58 -2.2 525,238 - HGI48_RS02425 0.59 -0.5 525,238 - HGI48_RS02425 0.59 -0.1 525,267 + HGI48_RS02425 0.62 -0.5 525,267 + HGI48_RS02425 0.62 -1.2 525,268 - HGI48_RS02425 0.62 -1.4 525,366 + HGI48_RS02425 0.75 -2.0 525,366 + HGI48_RS02425 0.75 -1.2 525,498 + -0.4 525,557 - -1.4 525,578 + -0.4 525,579 - -1.1 525,579 - -2.2 525,582 + -0.6 525,582 + -0.9 525,651 - +2.6 525,655 + +0.3 525,655 + -0.2 525,655 + -0.2 525,656 - +0.0 525,656 - +0.8 525,656 - +0.8 525,656 - +1.1 525,656 - +0.6 525,668 + +3.9 525,668 + -0.9 525,688 - +0.1 525,848 + +0.1 525,853 + -0.9 525,906 - -0.9 525,918 + -1.5 525,949 + +0.1 525,949 + +0.0 525,949 + -0.1 525,949 + -1.1 525,949 + +0.7 525,950 - -1.7 525,950 - -0.4 526,105 + +1.9 526,105 + -0.2 526,106 - +0.6 526,151 - +1.1 526,151 - HGI48_RS02430 0.12 +2.1 526,308 + HGI48_RS02430 0.21 -0.7 526,309 - HGI48_RS02430 0.21 +1.1 526,309 - HGI48_RS02430 0.21 -0.1 526,355 + HGI48_RS02430 0.24 +1.3 526,365 - +0.1 526,365 - HGI48_RS02430 0.24 +0.1 526,365 - HGI48_RS02430 0.24 +1.0 526,372 + HGI48_RS02430 0.25 -2.0 526,373 - HGI48_RS02430 0.25 -0.6 526,454 - -0.4 526,469 + HGI48_RS02430 0.31 +0.7 526,469 + +0.6 526,469 + +0.1 526,470 - HGI48_RS02430 0.31 -0.3 526,470 - HGI48_RS02430 0.31 -0.9
Or see this region's nucleotide sequence