Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01910

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01905 and HGI48_RS01910 are separated by 223 nucleotidesHGI48_RS01910 and HGI48_RS01915 are separated by 119 nucleotides HGI48_RS01905: HGI48_RS01905 - YhcH/YjgK/YiaL family protein, at 421,714 to 422,181 _RS01905 HGI48_RS01910: HGI48_RS01910 - 6-phospho-beta-glucosidase, at 422,405 to 423,841 _RS01910 HGI48_RS01915: HGI48_RS01915 - ornithine carbamoyltransferase, at 423,961 to 424,977 _RS01915 Position (kb) 422 423 424Strain fitness (log2 ratio) -2 -1 0 1 2 3at 421.514 kb on + strandat 421.516 kb on + strandat 421.517 kb on - strandat 421.517 kb on - strandat 421.665 kb on + strandat 421.666 kb on - strandat 421.666 kb on - strandat 421.666 kb on - strandat 421.666 kb on - strandat 421.694 kb on - strandat 421.697 kb on + strandat 421.698 kb on - strandat 421.754 kb on - strandat 421.754 kb on - strandat 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.787 kb on - strandat 421.790 kb on + strand, within HGI48_RS01905at 421.790 kb on + strand, within HGI48_RS01905at 421.790 kb on + strand, within HGI48_RS01905at 421.790 kb on + strand, within HGI48_RS01905at 421.791 kb on - strand, within HGI48_RS01905at 421.791 kb on - strandat 421.791 kb on - strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.801 kb on - strand, within HGI48_RS01905at 421.801 kb on - strand, within HGI48_RS01905at 421.801 kb on - strand, within HGI48_RS01905at 421.846 kb on - strand, within HGI48_RS01905at 421.846 kb on - strand, within HGI48_RS01905at 421.907 kb on - strand, within HGI48_RS01905at 421.919 kb on - strand, within HGI48_RS01905at 421.919 kb on - strand, within HGI48_RS01905at 422.099 kb on + strand, within HGI48_RS01905at 422.100 kb on - strand, within HGI48_RS01905at 422.138 kb on + strandat 422.138 kb on + strandat 422.138 kb on + strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.167 kb on - strandat 422.228 kb on - strandat 422.314 kb on + strandat 422.314 kb on + strandat 422.315 kb on - strandat 422.315 kb on - strandat 422.315 kb on - strandat 422.404 kb on + strandat 422.405 kb on - strandat 422.405 kb on - strandat 422.405 kb on - strandat 422.405 kb on - strandat 422.416 kb on - strandat 422.600 kb on + strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.680 kb on + strand, within HGI48_RS01910at 422.733 kb on - strand, within HGI48_RS01910at 422.825 kb on + strand, within HGI48_RS01910at 422.895 kb on - strand, within HGI48_RS01910at 422.912 kb on + strand, within HGI48_RS01910at 422.912 kb on + strand, within HGI48_RS01910at 422.912 kb on + strand, within HGI48_RS01910at 422.913 kb on - strand, within HGI48_RS01910at 422.913 kb on - strand, within HGI48_RS01910at 422.913 kb on - strand, within HGI48_RS01910at 423.026 kb on + strand, within HGI48_RS01910at 423.027 kb on - strand, within HGI48_RS01910at 423.131 kb on + strand, within HGI48_RS01910at 423.132 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.141 kb on - strand, within HGI48_RS01910at 423.197 kb on + strand, within HGI48_RS01910at 423.198 kb on - strand, within HGI48_RS01910at 423.210 kb on + strand, within HGI48_RS01910at 423.211 kb on - strand, within HGI48_RS01910at 423.211 kb on - strand, within HGI48_RS01910at 423.211 kb on - strand, within HGI48_RS01910at 423.211 kb on - strand, within HGI48_RS01910at 423.211 kb on - strand, within HGI48_RS01910at 423.236 kb on + strand, within HGI48_RS01910at 423.237 kb on - strand, within HGI48_RS01910at 423.323 kb on + strandat 423.323 kb on + strand, within HGI48_RS01910at 423.323 kb on + strand, within HGI48_RS01910at 423.324 kb on - strand, within HGI48_RS01910at 423.324 kb on - strand, within HGI48_RS01910at 423.324 kb on - strand, within HGI48_RS01910at 423.334 kb on + strand, within HGI48_RS01910at 423.338 kb on + strand, within HGI48_RS01910at 423.338 kb on + strand, within HGI48_RS01910at 423.338 kb on + strand, within HGI48_RS01910at 423.338 kb on + strand, within HGI48_RS01910at 423.339 kb on - strand, within HGI48_RS01910at 423.339 kb on - strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strandat 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.341 kb on + strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.342 kb on - strand, within HGI48_RS01910at 423.497 kb on + strand, within HGI48_RS01910at 423.497 kb on + strand, within HGI48_RS01910at 423.497 kb on + strand, within HGI48_RS01910at 423.497 kb on + strand, within HGI48_RS01910at 423.497 kb on + strand, within HGI48_RS01910at 423.497 kb on + strand, within HGI48_RS01910at 423.498 kb on - strand, within HGI48_RS01910at 423.498 kb on - strand, within HGI48_RS01910at 423.498 kb on - strand, within HGI48_RS01910at 423.498 kb on - strand, within HGI48_RS01910at 423.498 kb on - strand, within HGI48_RS01910at 423.498 kb on - strand, within HGI48_RS01910at 423.523 kb on + strandat 423.523 kb on + strand, within HGI48_RS01910at 423.587 kb on + strand, within HGI48_RS01910at 423.588 kb on - strand, within HGI48_RS01910at 423.665 kb on + strand, within HGI48_RS01910at 423.666 kb on - strandat 423.700 kb on + strandat 423.701 kb on - strandat 423.701 kb on - strandat 423.839 kb on + strandat 423.894 kb on + strandat 423.894 kb on + strandat 423.894 kb on + strandat 423.895 kb on - strandat 423.895 kb on - strandat 423.895 kb on - strandat 423.895 kb on - strandat 423.895 kb on - strandat 423.895 kb on - strandat 423.950 kb on - strandat 423.950 kb on - strandat 423.963 kb on - strandat 423.963 kb on - strandat 423.963 kb on - strandat 423.963 kb on - strandat 423.963 kb on - strandat 424.100 kb on + strandat 424.100 kb on + strand, within HGI48_RS01915at 424.101 kb on - strand, within HGI48_RS01915at 424.249 kb on + strand, within HGI48_RS01915at 424.249 kb on + strand, within HGI48_RS01915at 424.249 kb on + strand, within HGI48_RS01915at 424.249 kb on + strand, within HGI48_RS01915at 424.250 kb on - strand, within HGI48_RS01915at 424.250 kb on - strand, within HGI48_RS01915at 424.250 kb on - strand, within HGI48_RS01915at 424.250 kb on - strand, within HGI48_RS01915at 424.250 kb on - strand, within HGI48_RS01915at 424.250 kb on - strand, within HGI48_RS01915at 424.289 kb on + strand, within HGI48_RS01915at 424.289 kb on + strandat 424.289 kb on + strand, within HGI48_RS01915at 424.289 kb on + strand, within HGI48_RS01915at 424.290 kb on - strand, within HGI48_RS01915at 424.290 kb on - strand, within HGI48_RS01915at 424.290 kb on - strand, within HGI48_RS01915at 424.290 kb on - strand, within HGI48_RS01915at 424.290 kb on - strand, within HGI48_RS01915at 424.426 kb on + strand, within HGI48_RS01915at 424.426 kb on + strand, within HGI48_RS01915at 424.426 kb on + strand, within HGI48_RS01915at 424.427 kb on - strand, within HGI48_RS01915at 424.461 kb on + strand, within HGI48_RS01915at 424.461 kb on + strand, within HGI48_RS01915at 424.461 kb on + strand, within HGI48_RS01915at 424.461 kb on + strand, within HGI48_RS01915at 424.461 kb on + strandat 424.461 kb on + strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.462 kb on - strand, within HGI48_RS01915at 424.497 kb on - strand, within HGI48_RS01915at 424.497 kb on - strand, within HGI48_RS01915at 424.497 kb on - strand, within HGI48_RS01915at 424.497 kb on - strand, within HGI48_RS01915at 424.676 kb on + strand, within HGI48_RS01915at 424.677 kb on - strand, within HGI48_RS01915at 424.677 kb on - strandat 424.677 kb on - strand, within HGI48_RS01915at 424.720 kb on - strand, within HGI48_RS01915at 424.751 kb on + strandat 424.752 kb on - strand, within HGI48_RS01915at 424.775 kb on + strand, within HGI48_RS01915at 424.776 kb on - strand, within HGI48_RS01915at 424.776 kb on - strand, within HGI48_RS01915

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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421,514 + -0.8
421,516 + -0.7
421,517 - +0.5
421,517 - -1.2
421,665 + +0.5
421,666 - +0.2
421,666 - +0.8
421,666 - +0.8
421,666 - +1.6
421,694 - +0.2
421,697 + +1.0
421,698 - +0.1
421,754 - +1.2
421,754 - -1.8
421,786 + HGI48_RS01905 0.15 -0.4
421,786 + HGI48_RS01905 0.15 -0.1
421,786 + HGI48_RS01905 0.15 -0.5
421,786 + HGI48_RS01905 0.15 -0.6
421,786 + HGI48_RS01905 0.15 +0.6
421,787 - +2.2
421,790 + HGI48_RS01905 0.16 +0.6
421,790 + HGI48_RS01905 0.16 -0.7
421,790 + HGI48_RS01905 0.16 +0.7
421,790 + HGI48_RS01905 0.16 +0.2
421,791 - HGI48_RS01905 0.16 -0.2
421,791 - +0.2
421,791 - HGI48_RS01905 0.16 +0.9
421,800 + HGI48_RS01905 0.18 -1.6
421,800 + HGI48_RS01905 0.18 -0.4
421,800 + HGI48_RS01905 0.18 -0.4
421,800 + HGI48_RS01905 0.18 -0.3
421,800 + HGI48_RS01905 0.18 +0.1
421,800 + HGI48_RS01905 0.18 +0.7
421,801 - HGI48_RS01905 0.19 -1.8
421,801 - HGI48_RS01905 0.19 +0.2
421,801 - HGI48_RS01905 0.19 -0.5
421,846 - HGI48_RS01905 0.28 -0.8
421,846 - HGI48_RS01905 0.28 +1.5
421,907 - HGI48_RS01905 0.41 +2.2
421,919 - HGI48_RS01905 0.44 +0.3
421,919 - HGI48_RS01905 0.44 +1.5
422,099 + HGI48_RS01905 0.82 -0.2
422,100 - HGI48_RS01905 0.82 +1.5
422,138 + -0.4
422,138 + -1.0
422,138 + -0.1
422,139 - -0.7
422,139 - -0.4
422,139 - +1.2
422,139 - +0.2
422,139 - -0.1
422,139 - +0.2
422,139 - -2.1
422,139 - -0.2
422,167 - +1.7
422,228 - +0.7
422,314 + +0.1
422,314 + +0.2
422,315 - -0.1
422,315 - +1.4
422,315 - -1.8
422,404 + -0.5
422,405 - -1.4
422,405 - +0.3
422,405 - -0.6
422,405 - +0.3
422,416 - -0.8
422,600 + HGI48_RS01910 0.14 -0.6
422,610 - HGI48_RS01910 0.14 -1.1
422,610 - HGI48_RS01910 0.14 -0.6
422,610 - HGI48_RS01910 0.14 -0.0
422,610 - HGI48_RS01910 0.14 +1.4
422,680 + HGI48_RS01910 0.19 +2.9
422,733 - HGI48_RS01910 0.23 +0.2
422,825 + HGI48_RS01910 0.29 -0.5
422,895 - HGI48_RS01910 0.34 +0.8
422,912 + HGI48_RS01910 0.35 -0.4
422,912 + HGI48_RS01910 0.35 -0.0
422,912 + HGI48_RS01910 0.35 -0.1
422,913 - HGI48_RS01910 0.35 +1.5
422,913 - HGI48_RS01910 0.35 -1.1
422,913 - HGI48_RS01910 0.35 -0.8
423,026 + HGI48_RS01910 0.43 -0.3
423,027 - HGI48_RS01910 0.43 +0.2
423,131 + HGI48_RS01910 0.51 -2.6
423,132 - HGI48_RS01910 0.51 -0.4
423,135 - HGI48_RS01910 0.51 -0.6
423,135 - HGI48_RS01910 0.51 -0.3
423,135 - HGI48_RS01910 0.51 -0.0
423,135 - HGI48_RS01910 0.51 -1.1
423,135 - HGI48_RS01910 0.51 -0.1
423,141 - HGI48_RS01910 0.51 -1.1
423,197 + HGI48_RS01910 0.55 -1.1
423,198 - HGI48_RS01910 0.55 +0.6
423,210 + HGI48_RS01910 0.56 +0.9
423,211 - HGI48_RS01910 0.56 +0.1
423,211 - HGI48_RS01910 0.56 -0.8
423,211 - HGI48_RS01910 0.56 +0.2
423,211 - HGI48_RS01910 0.56 +0.1
423,211 - HGI48_RS01910 0.56 +0.3
423,236 + HGI48_RS01910 0.58 -0.8
423,237 - HGI48_RS01910 0.58 -0.2
423,323 + -0.4
423,323 + HGI48_RS01910 0.64 -0.5
423,323 + HGI48_RS01910 0.64 -1.1
423,324 - HGI48_RS01910 0.64 +0.3
423,324 - HGI48_RS01910 0.64 -0.1
423,324 - HGI48_RS01910 0.64 -0.2
423,334 + HGI48_RS01910 0.65 +0.4
423,338 + HGI48_RS01910 0.65 -0.6
423,338 + HGI48_RS01910 0.65 +0.9
423,338 + HGI48_RS01910 0.65 +0.9
423,338 + HGI48_RS01910 0.65 -1.6
423,339 - HGI48_RS01910 0.65 +0.2
423,339 - HGI48_RS01910 0.65 -0.3
423,341 + HGI48_RS01910 0.65 +0.2
423,341 + HGI48_RS01910 0.65 -0.4
423,341 + HGI48_RS01910 0.65 -1.4
423,341 + -0.4
423,341 + HGI48_RS01910 0.65 +0.4
423,341 + HGI48_RS01910 0.65 +0.6
423,341 + HGI48_RS01910 0.65 -1.1
423,341 + HGI48_RS01910 0.65 +0.6
423,341 + HGI48_RS01910 0.65 -0.8
423,342 - HGI48_RS01910 0.65 -0.8
423,342 - HGI48_RS01910 0.65 -0.4
423,342 - HGI48_RS01910 0.65 +0.0
423,342 - HGI48_RS01910 0.65 +0.1
423,342 - HGI48_RS01910 0.65 -0.6
423,342 - HGI48_RS01910 0.65 -0.8
423,342 - HGI48_RS01910 0.65 -2.1
423,342 - HGI48_RS01910 0.65 -0.2
423,342 - HGI48_RS01910 0.65 -2.3
423,342 - HGI48_RS01910 0.65 +0.4
423,342 - HGI48_RS01910 0.65 +0.5
423,342 - HGI48_RS01910 0.65 -0.8
423,342 - HGI48_RS01910 0.65 +1.1
423,497 + HGI48_RS01910 0.76 -0.4
423,497 + HGI48_RS01910 0.76 -0.1
423,497 + HGI48_RS01910 0.76 -0.7
423,497 + HGI48_RS01910 0.76 +0.6
423,497 + HGI48_RS01910 0.76 +0.5
423,497 + HGI48_RS01910 0.76 -0.3
423,498 - HGI48_RS01910 0.76 +0.7
423,498 - HGI48_RS01910 0.76 -0.6
423,498 - HGI48_RS01910 0.76 +1.8
423,498 - HGI48_RS01910 0.76 -1.4
423,498 - HGI48_RS01910 0.76 +1.8
423,498 - HGI48_RS01910 0.76 -0.4
423,523 + +1.2
423,523 + HGI48_RS01910 0.78 -2.3
423,587 + HGI48_RS01910 0.82 +0.2
423,588 - HGI48_RS01910 0.82 -1.2
423,665 + HGI48_RS01910 0.88 +0.2
423,666 - +1.2
423,700 + +0.2
423,701 - +0.6
423,701 - -0.8
423,839 + -0.8
423,894 + -0.5
423,894 + -0.1
423,894 + +1.2
423,895 - -0.8
423,895 - -0.1
423,895 - +0.5
423,895 - -0.4
423,895 - -0.5
423,895 - +0.8
423,950 - -0.0
423,950 - +1.0
423,963 - +1.2
423,963 - +1.2
423,963 - +0.2
423,963 - +2.9
423,963 - -0.0
424,100 + +0.6
424,100 + HGI48_RS01915 0.14 -0.9
424,101 - HGI48_RS01915 0.14 -0.2
424,249 + HGI48_RS01915 0.28 +3.0
424,249 + HGI48_RS01915 0.28 +2.4
424,249 + HGI48_RS01915 0.28 -0.5
424,249 + HGI48_RS01915 0.28 -0.8
424,250 - HGI48_RS01915 0.28 +2.5
424,250 - HGI48_RS01915 0.28 -0.3
424,250 - HGI48_RS01915 0.28 -0.5
424,250 - HGI48_RS01915 0.28 +0.9
424,250 - HGI48_RS01915 0.28 -0.1
424,250 - HGI48_RS01915 0.28 -1.5
424,289 + HGI48_RS01915 0.32 +0.9
424,289 + +1.6
424,289 + HGI48_RS01915 0.32 -0.1
424,289 + HGI48_RS01915 0.32 -0.8
424,290 - HGI48_RS01915 0.32 +0.2
424,290 - HGI48_RS01915 0.32 -1.1
424,290 - HGI48_RS01915 0.32 -0.8
424,290 - HGI48_RS01915 0.32 -1.0
424,290 - HGI48_RS01915 0.32 +0.6
424,426 + HGI48_RS01915 0.46 +0.2
424,426 + HGI48_RS01915 0.46 +0.3
424,426 + HGI48_RS01915 0.46 +0.1
424,427 - HGI48_RS01915 0.46 +1.7
424,461 + HGI48_RS01915 0.49 -0.5
424,461 + HGI48_RS01915 0.49 +0.6
424,461 + HGI48_RS01915 0.49 -0.6
424,461 + HGI48_RS01915 0.49 -0.8
424,461 + +1.2
424,461 + HGI48_RS01915 0.49 -0.3
424,462 - HGI48_RS01915 0.49 -1.8
424,462 - HGI48_RS01915 0.49 -2.3
424,462 - HGI48_RS01915 0.49 +0.1
424,462 - HGI48_RS01915 0.49 -1.4
424,462 - HGI48_RS01915 0.49 -1.0
424,462 - HGI48_RS01915 0.49 -0.5
424,462 - HGI48_RS01915 0.49 -0.4
424,462 - HGI48_RS01915 0.49 +1.3
424,497 - HGI48_RS01915 0.53 +0.2
424,497 - HGI48_RS01915 0.53 -0.4
424,497 - HGI48_RS01915 0.53 -0.5
424,497 - HGI48_RS01915 0.53 -0.3
424,676 + HGI48_RS01915 0.70 +0.1
424,677 - HGI48_RS01915 0.70 +0.2
424,677 - +0.6
424,677 - HGI48_RS01915 0.70 -0.6
424,720 - HGI48_RS01915 0.75 +1.8
424,751 + +1.8
424,752 - HGI48_RS01915 0.78 +2.2
424,775 + HGI48_RS01915 0.80 -1.5
424,776 - HGI48_RS01915 0.80 -0.2
424,776 - HGI48_RS01915 0.80 +0.2

Or see this region's nucleotide sequence