Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01690 and HGI48_RS01695 are separated by 231 nucleotides HGI48_RS01695 and HGI48_RS01700 are separated by 231 nucleotides
HGI48_RS01690: HGI48_RS01690 - 2,5-didehydrogluconate reductase DkgA, at 373,580 to 374,425
_RS01690
HGI48_RS01695: HGI48_RS01695 - alcohol dehydrogenase, at 374,657 to 375,820
_RS01695
HGI48_RS01700: HGI48_RS01700 - AraC family transcriptional regulator, at 376,052 to 376,966
_RS01700
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 373.664 kb on + strand at 373.664 kb on + strand at 373.664 kb on + strand at 373.665 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand at 373.839 kb on - strand, within HGI48_RS01690 at 374.079 kb on + strand at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.115 kb on + strand at 374.115 kb on + strand at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand at 374.139 kb on - strand, within HGI48_RS01690 at 374.139 kb on - strand, within HGI48_RS01690 at 374.386 kb on + strand at 374.386 kb on + strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.405 kb on - strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.528 kb on + strand at 374.528 kb on + strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.572 kb on + strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.591 kb on + strand at 374.591 kb on + strand at 374.592 kb on - strand at 374.592 kb on - strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.629 kb on - strand at 374.629 kb on - strand at 374.673 kb on + strand at 374.674 kb on - strand at 374.674 kb on - strand at 374.804 kb on + strand, within HGI48_RS01695 at 374.901 kb on + strand, within HGI48_RS01695 at 374.963 kb on - strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand at 375.149 kb on + strand, within HGI48_RS01695 at 375.149 kb on + strand, within HGI48_RS01695 at 375.150 kb on - strand, within HGI48_RS01695 at 375.213 kb on + strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.440 kb on + strand, within HGI48_RS01695 at 375.441 kb on - strand, within HGI48_RS01695 at 375.492 kb on + strand at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.492 kb on + strand, within HGI48_RS01695 at 375.493 kb on - strand at 375.493 kb on - strand, within HGI48_RS01695 at 375.493 kb on - strand, within HGI48_RS01695 at 375.644 kb on + strand, within HGI48_RS01695 at 375.644 kb on + strand, within HGI48_RS01695 at 375.644 kb on + strand at 375.644 kb on + strand, within HGI48_RS01695 at 375.644 kb on + strand, within HGI48_RS01695 at 375.697 kb on + strand, within HGI48_RS01695 at 375.698 kb on - strand, within HGI48_RS01695 at 375.714 kb on + strand at 375.715 kb on - strand at 375.715 kb on - strand at 375.808 kb on + strand at 375.809 kb on - strand at 375.835 kb on + strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.836 kb on - strand at 375.843 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.854 kb on + strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.855 kb on - strand at 375.913 kb on - strand at 376.049 kb on - strand at 376.049 kb on - strand at 376.049 kb on - strand at 376.080 kb on + strand at 376.081 kb on - strand at 376.100 kb on + strand at 376.100 kb on + strand at 376.100 kb on + strand at 376.100 kb on + strand at 376.101 kb on - strand at 376.154 kb on + strand, within HGI48_RS01700 at 376.154 kb on + strand, within HGI48_RS01700 at 376.155 kb on - strand, within HGI48_RS01700 at 376.190 kb on + strand, within HGI48_RS01700 at 376.260 kb on - strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.274 kb on + strand, within HGI48_RS01700 at 376.275 kb on - strand, within HGI48_RS01700 at 376.275 kb on - strand, within HGI48_RS01700 at 376.275 kb on - strand, within HGI48_RS01700 at 376.278 kb on + strand, within HGI48_RS01700 at 376.278 kb on + strand, within HGI48_RS01700 at 376.278 kb on + strand at 376.278 kb on + strand, within HGI48_RS01700 at 376.278 kb on + strand, within HGI48_RS01700 at 376.279 kb on - strand at 376.279 kb on - strand, within HGI48_RS01700 at 376.279 kb on - strand, within HGI48_RS01700 at 376.279 kb on - strand, within HGI48_RS01700 at 376.555 kb on + strand, within HGI48_RS01700 at 376.556 kb on - strand, within HGI48_RS01700 at 376.560 kb on - strand, within HGI48_RS01700 at 376.560 kb on - strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.566 kb on + strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.567 kb on - strand, within HGI48_RS01700 at 376.594 kb on - strand, within HGI48_RS01700 at 376.614 kb on - strand, within HGI48_RS01700 at 376.649 kb on + strand, within HGI48_RS01700 at 376.649 kb on + strand, within HGI48_RS01700 at 376.650 kb on - strand, within HGI48_RS01700 at 376.733 kb on - strand, within HGI48_RS01700 at 376.733 kb on - strand, within HGI48_RS01700 at 376.733 kb on - strand, within HGI48_RS01700 at 376.753 kb on + strand, within HGI48_RS01700 at 376.754 kb on - strand, within HGI48_RS01700 at 376.769 kb on + strand, within HGI48_RS01700 at 376.769 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand at 376.773 kb on + strand, within HGI48_RS01700 at 376.773 kb on + strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700 at 376.774 kb on - strand, within HGI48_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 373,664 + +0.5 373,664 + -0.8 373,664 + +0.2 373,665 - HGI48_RS01690 0.10 +1.4 373,715 - HGI48_RS01690 0.16 +0.1 373,715 - +0.6 373,839 - HGI48_RS01690 0.31 -1.8 374,079 + +2.2 374,079 + HGI48_RS01690 0.59 -0.5 374,079 + HGI48_RS01690 0.59 -0.1 374,079 + HGI48_RS01690 0.59 -1.4 374,080 - HGI48_RS01690 0.59 -0.4 374,080 - HGI48_RS01690 0.59 +0.7 374,080 - HGI48_RS01690 0.59 -2.5 374,080 - HGI48_RS01690 0.59 -0.9 374,080 - HGI48_RS01690 0.59 +0.0 374,080 - HGI48_RS01690 0.59 +0.2 374,080 - HGI48_RS01690 0.59 +0.2 374,080 - HGI48_RS01690 0.59 -1.3 374,080 - HGI48_RS01690 0.59 -0.9 374,080 - HGI48_RS01690 0.59 -0.2 374,080 - HGI48_RS01690 0.59 -1.6 374,080 - HGI48_RS01690 0.59 -1.1 374,110 + HGI48_RS01690 0.63 -0.1 374,110 + HGI48_RS01690 0.63 +0.2 374,115 + -0.4 374,115 + +0.6 374,116 - HGI48_RS01690 0.63 -1.1 374,116 - HGI48_RS01690 0.63 +0.6 374,116 - +1.8 374,139 - HGI48_RS01690 0.66 -0.4 374,139 - HGI48_RS01690 0.66 -0.5 374,386 + -0.1 374,386 + +0.9 374,387 - +0.6 374,387 - +0.2 374,387 - +1.5 374,387 - -0.8 374,405 - +0.6 374,425 + -0.8 374,425 + +0.8 374,425 + +0.5 374,528 + +1.2 374,528 + -2.3 374,529 - +0.4 374,529 - +0.3 374,529 - +1.5 374,529 - -0.4 374,572 + -2.0 374,573 - +0.8 374,573 - +0.2 374,573 - +0.2 374,591 + +0.7 374,591 + +2.5 374,592 - -2.0 374,592 - -1.1 374,622 + -0.2 374,622 + -0.6 374,622 + -0.4 374,623 - +0.2 374,623 - -2.0 374,623 - +0.2 374,623 - +2.8 374,623 - +1.2 374,623 - -0.9 374,628 + -0.2 374,628 + +0.3 374,628 + +1.5 374,629 - -2.0 374,629 - +1.2 374,673 + -1.4 374,674 - -1.0 374,674 - -1.6 374,804 + HGI48_RS01695 0.13 -0.8 374,901 + HGI48_RS01695 0.21 +0.6 374,963 - HGI48_RS01695 0.26 -0.2 375,101 + HGI48_RS01695 0.38 -1.1 375,101 + HGI48_RS01695 0.38 -0.4 375,101 + HGI48_RS01695 0.38 +0.5 375,102 - HGI48_RS01695 0.38 +0.3 375,102 - HGI48_RS01695 0.38 -0.6 375,108 + HGI48_RS01695 0.39 -1.8 375,108 + HGI48_RS01695 0.39 +0.2 375,108 + HGI48_RS01695 0.39 -1.4 375,108 + +1.2 375,108 + HGI48_RS01695 0.39 -2.4 375,108 + HGI48_RS01695 0.39 +0.9 375,109 - HGI48_RS01695 0.39 -1.1 375,109 - HGI48_RS01695 0.39 -0.7 375,112 + HGI48_RS01695 0.39 -0.8 375,112 + +0.6 375,112 + HGI48_RS01695 0.39 +1.2 375,112 + HGI48_RS01695 0.39 -0.1 375,112 + HGI48_RS01695 0.39 +0.2 375,112 + HGI48_RS01695 0.39 -0.7 375,112 + HGI48_RS01695 0.39 -0.1 375,112 + HGI48_RS01695 0.39 -1.3 375,112 + HGI48_RS01695 0.39 -1.1 375,113 - HGI48_RS01695 0.39 -2.3 375,113 - HGI48_RS01695 0.39 +0.8 375,113 - HGI48_RS01695 0.39 +1.1 375,113 - HGI48_RS01695 0.39 +0.2 375,113 - HGI48_RS01695 0.39 -0.4 375,113 - HGI48_RS01695 0.39 -3.1 375,113 - HGI48_RS01695 0.39 +1.2 375,113 - +1.8 375,149 + HGI48_RS01695 0.42 +0.0 375,149 + HGI48_RS01695 0.42 +0.5 375,150 - HGI48_RS01695 0.42 -0.0 375,213 + HGI48_RS01695 0.48 +0.5 375,214 - HGI48_RS01695 0.48 -0.2 375,214 - HGI48_RS01695 0.48 -0.1 375,279 + HGI48_RS01695 0.53 +0.9 375,279 + HGI48_RS01695 0.53 -1.1 375,279 + HGI48_RS01695 0.53 +0.5 375,279 + HGI48_RS01695 0.53 +0.4 375,279 + HGI48_RS01695 0.53 +0.2 375,280 - HGI48_RS01695 0.54 -1.0 375,280 - HGI48_RS01695 0.54 +1.0 375,280 - HGI48_RS01695 0.54 -0.4 375,280 - HGI48_RS01695 0.54 +1.5 375,280 - HGI48_RS01695 0.54 -0.5 375,280 - HGI48_RS01695 0.54 -0.3 375,440 + HGI48_RS01695 0.67 -0.4 375,441 - HGI48_RS01695 0.67 -1.1 375,492 + +0.6 375,492 + HGI48_RS01695 0.72 -0.5 375,492 + HGI48_RS01695 0.72 -0.0 375,492 + HGI48_RS01695 0.72 +0.9 375,492 + HGI48_RS01695 0.72 -1.4 375,492 + HGI48_RS01695 0.72 -0.2 375,492 + HGI48_RS01695 0.72 +1.2 375,492 + HGI48_RS01695 0.72 -2.1 375,492 + HGI48_RS01695 0.72 +0.5 375,493 - +0.6 375,493 - HGI48_RS01695 0.72 +0.0 375,493 - HGI48_RS01695 0.72 +0.9 375,644 + HGI48_RS01695 0.85 -1.4 375,644 + HGI48_RS01695 0.85 -1.1 375,644 + +1.2 375,644 + HGI48_RS01695 0.85 -0.9 375,644 + HGI48_RS01695 0.85 +0.2 375,697 + HGI48_RS01695 0.89 -0.1 375,698 - HGI48_RS01695 0.89 +0.4 375,714 + -1.1 375,715 - +0.5 375,715 - -2.1 375,808 + +0.6 375,809 - -0.1 375,835 + -0.3 375,836 - +0.8 375,836 - +0.2 375,836 - +0.4 375,836 - +2.2 375,836 - +0.7 375,843 + -0.5 375,854 + +0.4 375,854 + +2.5 375,854 + +1.8 375,854 + -0.2 375,854 + +0.7 375,854 + +0.6 375,855 - -0.2 375,855 - -1.1 375,855 - -0.6 375,855 - +1.2 375,855 - -0.8 375,913 - -1.3 376,049 - -1.4 376,049 - -0.4 376,049 - -0.0 376,080 + +1.1 376,081 - +0.5 376,100 + +0.9 376,100 + -0.5 376,100 + -0.6 376,100 + -1.1 376,101 - -0.0 376,154 + HGI48_RS01700 0.11 +0.1 376,154 + HGI48_RS01700 0.11 -1.0 376,155 - HGI48_RS01700 0.11 -1.5 376,190 + HGI48_RS01700 0.15 +1.0 376,260 - HGI48_RS01700 0.23 -0.7 376,274 + HGI48_RS01700 0.24 -0.2 376,274 + HGI48_RS01700 0.24 -0.4 376,274 + HGI48_RS01700 0.24 -2.5 376,274 + HGI48_RS01700 0.24 -1.3 376,275 - HGI48_RS01700 0.24 -1.4 376,275 - HGI48_RS01700 0.24 -0.2 376,275 - HGI48_RS01700 0.24 +0.8 376,278 + HGI48_RS01700 0.25 -0.8 376,278 + HGI48_RS01700 0.25 -0.5 376,278 + +1.2 376,278 + HGI48_RS01700 0.25 +0.5 376,278 + HGI48_RS01700 0.25 +0.4 376,279 - -0.4 376,279 - HGI48_RS01700 0.25 +0.4 376,279 - HGI48_RS01700 0.25 -1.2 376,279 - HGI48_RS01700 0.25 +0.8 376,555 + HGI48_RS01700 0.55 -0.4 376,556 - HGI48_RS01700 0.55 -0.4 376,560 - HGI48_RS01700 0.56 -0.1 376,560 - HGI48_RS01700 0.56 +1.5 376,566 + HGI48_RS01700 0.56 +0.4 376,566 + HGI48_RS01700 0.56 -0.5 376,566 + HGI48_RS01700 0.56 -0.8 376,566 + HGI48_RS01700 0.56 +0.8 376,566 + HGI48_RS01700 0.56 -2.0 376,567 - HGI48_RS01700 0.56 -1.3 376,567 - HGI48_RS01700 0.56 +0.3 376,567 - HGI48_RS01700 0.56 -1.4 376,567 - HGI48_RS01700 0.56 +1.7 376,567 - HGI48_RS01700 0.56 -0.4 376,567 - HGI48_RS01700 0.56 +1.2 376,567 - HGI48_RS01700 0.56 +0.2 376,567 - HGI48_RS01700 0.56 +0.0 376,567 - HGI48_RS01700 0.56 -0.2 376,567 - HGI48_RS01700 0.56 -0.4 376,594 - HGI48_RS01700 0.59 +0.8 376,614 - HGI48_RS01700 0.61 -1.1 376,649 + HGI48_RS01700 0.65 -1.4 376,649 + HGI48_RS01700 0.65 -0.7 376,650 - HGI48_RS01700 0.65 -0.1 376,733 - HGI48_RS01700 0.74 -0.8 376,733 - HGI48_RS01700 0.74 -0.5 376,733 - HGI48_RS01700 0.74 -0.6 376,753 + HGI48_RS01700 0.77 -0.8 376,754 - HGI48_RS01700 0.77 -1.8 376,769 + HGI48_RS01700 0.78 -0.4 376,769 + HGI48_RS01700 0.78 -0.4 376,773 + HGI48_RS01700 0.79 +1.2 376,773 + HGI48_RS01700 0.79 -2.3 376,773 + +0.6 376,773 + HGI48_RS01700 0.79 -0.0 376,773 + HGI48_RS01700 0.79 -1.1 376,774 - HGI48_RS01700 0.79 -1.4 376,774 - HGI48_RS01700 0.79 +0.4 376,774 - HGI48_RS01700 0.79 +1.2 376,774 - HGI48_RS01700 0.79 -0.1 376,774 - HGI48_RS01700 0.79 -1.6 376,774 - HGI48_RS01700 0.79 -0.8 376,774 - HGI48_RS01700 0.79 -0.1 376,774 - HGI48_RS01700 0.79 -0.4
Or see this region's nucleotide sequence