Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01140

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01130 and HGI48_RS01135 are separated by 156 nucleotidesHGI48_RS01135 and HGI48_RS01140 overlap by 4 nucleotidesHGI48_RS01140 and HGI48_RS01145 are separated by 37 nucleotides HGI48_RS01130: HGI48_RS01130 - hypothetical protein, at 255,251 to 255,874 _RS01130 HGI48_RS01135: HGI48_RS01135 - heavy metal response regulator transcription factor, at 256,031 to 256,702 _RS01135 HGI48_RS01140: HGI48_RS01140 - heavy metal sensor histidine kinase, at 256,699 to 258,132 _RS01140 HGI48_RS01145: HGI48_RS01145 - 2-iminoacetate synthase ThiH, at 258,170 to 259,315 _RS01145 Position (kb) 256 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 255.833 kb on + strandat 255.833 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 256.036 kb on + strandat 256.163 kb on + strand, within HGI48_RS01135at 256.164 kb on - strand, within HGI48_RS01135at 256.231 kb on + strand, within HGI48_RS01135at 256.279 kb on - strandat 256.288 kb on + strand, within HGI48_RS01135at 256.289 kb on - strand, within HGI48_RS01135at 256.319 kb on + strand, within HGI48_RS01135at 256.361 kb on - strand, within HGI48_RS01135at 256.389 kb on + strand, within HGI48_RS01135at 256.390 kb on - strand, within HGI48_RS01135at 256.390 kb on - strand, within HGI48_RS01135at 256.390 kb on - strand, within HGI48_RS01135at 256.422 kb on + strand, within HGI48_RS01135at 256.422 kb on + strandat 256.434 kb on + strand, within HGI48_RS01135at 256.434 kb on + strand, within HGI48_RS01135at 256.434 kb on + strand, within HGI48_RS01135at 256.434 kb on + strand, within HGI48_RS01135at 256.435 kb on - strand, within HGI48_RS01135at 256.435 kb on - strandat 256.492 kb on + strand, within HGI48_RS01135at 256.492 kb on + strandat 256.492 kb on + strand, within HGI48_RS01135at 256.492 kb on + strand, within HGI48_RS01135at 256.492 kb on + strand, within HGI48_RS01135at 256.493 kb on - strand, within HGI48_RS01135at 256.493 kb on - strand, within HGI48_RS01135at 256.629 kb on + strand, within HGI48_RS01135at 256.630 kb on - strand, within HGI48_RS01135at 256.630 kb on - strand, within HGI48_RS01135at 256.630 kb on - strandat 256.679 kb on + strandat 256.680 kb on - strandat 256.680 kb on - strandat 256.801 kb on + strandat 256.802 kb on - strandat 256.802 kb on - strandat 256.807 kb on + strandat 256.807 kb on + strandat 256.807 kb on + strandat 256.807 kb on + strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.854 kb on - strand, within HGI48_RS01140at 256.870 kb on + strand, within HGI48_RS01140at 256.873 kb on + strand, within HGI48_RS01140at 256.883 kb on + strand, within HGI48_RS01140at 256.884 kb on - strand, within HGI48_RS01140at 256.900 kb on - strand, within HGI48_RS01140at 256.999 kb on - strand, within HGI48_RS01140at 257.019 kb on + strand, within HGI48_RS01140at 257.019 kb on + strand, within HGI48_RS01140at 257.019 kb on + strand, within HGI48_RS01140at 257.020 kb on - strand, within HGI48_RS01140at 257.020 kb on - strand, within HGI48_RS01140at 257.209 kb on + strand, within HGI48_RS01140at 257.209 kb on + strandat 257.209 kb on + strand, within HGI48_RS01140at 257.209 kb on + strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.301 kb on - strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.407 kb on - strand, within HGI48_RS01140at 257.437 kb on + strand, within HGI48_RS01140at 257.527 kb on + strand, within HGI48_RS01140at 257.527 kb on + strand, within HGI48_RS01140at 257.551 kb on + strand, within HGI48_RS01140at 257.551 kb on + strand, within HGI48_RS01140at 257.552 kb on - strand, within HGI48_RS01140at 257.552 kb on - strand, within HGI48_RS01140at 257.562 kb on - strand, within HGI48_RS01140at 257.574 kb on + strand, within HGI48_RS01140at 257.575 kb on - strand, within HGI48_RS01140at 257.575 kb on - strandat 257.704 kb on + strand, within HGI48_RS01140at 257.704 kb on + strand, within HGI48_RS01140at 257.704 kb on + strand, within HGI48_RS01140at 257.705 kb on - strand, within HGI48_RS01140at 257.705 kb on - strand, within HGI48_RS01140at 257.705 kb on - strand, within HGI48_RS01140at 257.712 kb on + strand, within HGI48_RS01140at 257.712 kb on + strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.780 kb on + strand, within HGI48_RS01140at 257.781 kb on - strand, within HGI48_RS01140at 257.781 kb on - strand, within HGI48_RS01140at 257.802 kb on + strand, within HGI48_RS01140at 257.802 kb on + strand, within HGI48_RS01140at 257.827 kb on + strand, within HGI48_RS01140at 257.849 kb on + strand, within HGI48_RS01140at 257.888 kb on + strand, within HGI48_RS01140at 257.982 kb on + strandat 257.982 kb on + strand, within HGI48_RS01140at 258.009 kb on + strandat 258.010 kb on - strandat 258.096 kb on + strandat 258.097 kb on - strandat 258.130 kb on + strandat 258.130 kb on + strandat 258.131 kb on - strandat 258.131 kb on - strandat 258.131 kb on - strandat 258.550 kb on - strandat 258.564 kb on + strand, within HGI48_RS01145at 258.565 kb on - strand, within HGI48_RS01145at 258.565 kb on - strand, within HGI48_RS01145at 258.565 kb on - strandat 258.565 kb on - strand, within HGI48_RS01145at 258.586 kb on + strandat 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.729 kb on + strand, within HGI48_RS01145at 258.729 kb on + strand, within HGI48_RS01145at 258.730 kb on - strand, within HGI48_RS01145at 258.744 kb on + strand, within HGI48_RS01145at 258.744 kb on + strand, within HGI48_RS01145at 258.756 kb on + strand, within HGI48_RS01145at 258.756 kb on + strand, within HGI48_RS01145at 258.798 kb on + strand, within HGI48_RS01145at 258.799 kb on - strand, within HGI48_RS01145at 258.799 kb on - strand, within HGI48_RS01145at 258.879 kb on + strand, within HGI48_RS01145at 258.895 kb on + strand, within HGI48_RS01145at 258.895 kb on + strand, within HGI48_RS01145at 258.895 kb on + strandat 258.949 kb on + strandat 258.949 kb on + strand, within HGI48_RS01145at 258.949 kb on + strand, within HGI48_RS01145at 258.949 kb on + strand, within HGI48_RS01145at 258.950 kb on - strand, within HGI48_RS01145at 258.950 kb on - strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.027 kb on - strand, within HGI48_RS01145at 259.060 kb on - strand, within HGI48_RS01145at 259.060 kb on - strand, within HGI48_RS01145at 259.071 kb on + strand, within HGI48_RS01145at 259.072 kb on - strand, within HGI48_RS01145at 259.072 kb on - strandat 259.072 kb on - strand, within HGI48_RS01145at 259.072 kb on - strand, within HGI48_RS01145at 259.084 kb on + strand, within HGI48_RS01145

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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255,833 + +0.4
255,833 + +0.2
255,951 + +0.3
255,951 + +0.5
255,951 + -1.0
255,951 + -0.1
255,951 + -0.5
255,952 - +2.2
255,952 - -0.0
255,952 - +0.4
255,952 - +0.4
255,952 - +0.2
255,982 + +2.3
255,982 + -0.9
255,982 + -1.2
255,982 + -0.2
255,982 + -0.4
255,982 + -0.4
255,983 - -0.7
255,983 - -0.1
255,983 - +0.2
255,983 - -0.6
255,983 - -0.0
255,983 - -0.5
256,036 + +0.8
256,163 + HGI48_RS01135 0.20 -0.3
256,164 - HGI48_RS01135 0.20 -1.4
256,231 + HGI48_RS01135 0.30 -1.8
256,279 - +0.2
256,288 + HGI48_RS01135 0.38 -1.1
256,289 - HGI48_RS01135 0.38 +0.2
256,319 + HGI48_RS01135 0.43 -1.1
256,361 - HGI48_RS01135 0.49 -0.8
256,389 + HGI48_RS01135 0.53 +0.3
256,390 - HGI48_RS01135 0.53 +1.5
256,390 - HGI48_RS01135 0.53 -0.5
256,390 - HGI48_RS01135 0.53 -0.9
256,422 + HGI48_RS01135 0.58 -1.1
256,422 + +1.6
256,434 + HGI48_RS01135 0.60 -2.5
256,434 + HGI48_RS01135 0.60 +0.4
256,434 + HGI48_RS01135 0.60 +0.8
256,434 + HGI48_RS01135 0.60 -0.1
256,435 - HGI48_RS01135 0.60 +0.8
256,435 - +1.2
256,492 + HGI48_RS01135 0.69 -0.6
256,492 + +1.2
256,492 + HGI48_RS01135 0.69 -1.6
256,492 + HGI48_RS01135 0.69 +0.8
256,492 + HGI48_RS01135 0.69 -1.1
256,493 - HGI48_RS01135 0.69 -1.6
256,493 - HGI48_RS01135 0.69 -0.2
256,629 + HGI48_RS01135 0.89 +0.2
256,630 - HGI48_RS01135 0.89 +0.8
256,630 - HGI48_RS01135 0.89 +2.2
256,630 - +1.8
256,679 + -1.0
256,680 - -0.1
256,680 - -1.4
256,801 + -2.9
256,802 - -0.0
256,802 - -0.4
256,807 + +1.5
256,807 + -0.5
256,807 + -1.0
256,807 + -0.4
256,808 - -0.4
256,808 - -1.6
256,808 - +1.4
256,808 - -0.5
256,808 - -1.1
256,808 - +0.6
256,854 - HGI48_RS01140 0.11 -0.6
256,870 + HGI48_RS01140 0.12 +0.4
256,873 + HGI48_RS01140 0.12 +0.7
256,883 + HGI48_RS01140 0.13 -0.6
256,884 - HGI48_RS01140 0.13 -1.4
256,900 - HGI48_RS01140 0.14 -1.5
256,999 - HGI48_RS01140 0.21 -1.1
257,019 + HGI48_RS01140 0.22 +1.2
257,019 + HGI48_RS01140 0.22 -0.1
257,019 + HGI48_RS01140 0.22 -0.0
257,020 - HGI48_RS01140 0.22 -0.6
257,020 - HGI48_RS01140 0.22 +0.9
257,209 + HGI48_RS01140 0.36 -1.1
257,209 + +2.0
257,209 + HGI48_RS01140 0.36 -0.1
257,209 + HGI48_RS01140 0.36 -0.5
257,210 - HGI48_RS01140 0.36 +1.0
257,210 - HGI48_RS01140 0.36 -1.4
257,210 - HGI48_RS01140 0.36 -1.1
257,249 + HGI48_RS01140 0.38 +0.2
257,249 + HGI48_RS01140 0.38 -0.8
257,249 + HGI48_RS01140 0.38 +0.6
257,249 + HGI48_RS01140 0.38 -0.9
257,301 - HGI48_RS01140 0.42 -0.8
257,307 + HGI48_RS01140 0.42 -1.8
257,307 + HGI48_RS01140 0.42 -0.1
257,307 + HGI48_RS01140 0.42 +1.2
257,407 - HGI48_RS01140 0.49 -0.2
257,437 + HGI48_RS01140 0.51 -1.4
257,527 + HGI48_RS01140 0.58 +0.4
257,527 + HGI48_RS01140 0.58 +0.1
257,551 + HGI48_RS01140 0.59 -1.7
257,551 + HGI48_RS01140 0.59 +0.5
257,552 - HGI48_RS01140 0.59 -0.8
257,552 - HGI48_RS01140 0.59 +1.2
257,562 - HGI48_RS01140 0.60 +0.4
257,574 + HGI48_RS01140 0.61 -0.0
257,575 - HGI48_RS01140 0.61 +0.2
257,575 - +0.6
257,704 + HGI48_RS01140 0.70 -1.8
257,704 + HGI48_RS01140 0.70 +0.6
257,704 + HGI48_RS01140 0.70 -1.0
257,705 - HGI48_RS01140 0.70 -1.0
257,705 - HGI48_RS01140 0.70 +0.9
257,705 - HGI48_RS01140 0.70 -0.2
257,712 + HGI48_RS01140 0.71 +0.2
257,712 + HGI48_RS01140 0.71 -1.1
257,713 - HGI48_RS01140 0.71 -0.8
257,713 - HGI48_RS01140 0.71 -0.2
257,713 - HGI48_RS01140 0.71 -2.2
257,713 - HGI48_RS01140 0.71 +0.4
257,780 + HGI48_RS01140 0.75 -0.2
257,781 - HGI48_RS01140 0.75 +0.2
257,781 - HGI48_RS01140 0.75 +0.6
257,802 + HGI48_RS01140 0.77 +1.1
257,802 + HGI48_RS01140 0.77 -1.6
257,827 + HGI48_RS01140 0.79 +1.4
257,849 + HGI48_RS01140 0.80 +1.2
257,888 + HGI48_RS01140 0.83 -0.3
257,982 + +0.6
257,982 + HGI48_RS01140 0.89 -0.6
258,009 + +0.2
258,010 - +1.6
258,096 + -1.4
258,097 - +0.9
258,130 + -0.7
258,130 + -1.4
258,131 - +0.5
258,131 - -0.4
258,131 - -0.8
258,550 - +0.6
258,564 + HGI48_RS01145 0.34 -0.1
258,565 - HGI48_RS01145 0.34 -0.0
258,565 - HGI48_RS01145 0.34 +0.2
258,565 - +2.0
258,565 - HGI48_RS01145 0.34 -1.1
258,586 + -0.4
258,586 + HGI48_RS01145 0.36 +0.2
258,586 + HGI48_RS01145 0.36 +0.8
258,586 + HGI48_RS01145 0.36 -2.0
258,586 + HGI48_RS01145 0.36 -0.6
258,587 - HGI48_RS01145 0.36 -1.1
258,587 - HGI48_RS01145 0.36 -0.4
258,587 - HGI48_RS01145 0.36 +0.7
258,588 + HGI48_RS01145 0.36 -0.7
258,588 + HGI48_RS01145 0.36 -1.4
258,588 + HGI48_RS01145 0.36 +1.2
258,588 + HGI48_RS01145 0.36 +0.1
258,588 + HGI48_RS01145 0.36 -0.4
258,589 - HGI48_RS01145 0.37 -0.8
258,589 - HGI48_RS01145 0.37 -1.1
258,589 - HGI48_RS01145 0.37 -0.6
258,589 - HGI48_RS01145 0.37 +0.2
258,589 - HGI48_RS01145 0.37 +0.8
258,589 - HGI48_RS01145 0.37 +0.2
258,589 - HGI48_RS01145 0.37 -1.1
258,589 - HGI48_RS01145 0.37 -1.5
258,589 - HGI48_RS01145 0.37 +0.0
258,589 - HGI48_RS01145 0.37 -1.4
258,729 + HGI48_RS01145 0.49 -0.6
258,729 + HGI48_RS01145 0.49 -1.0
258,730 - HGI48_RS01145 0.49 -1.4
258,744 + HGI48_RS01145 0.50 -1.0
258,744 + HGI48_RS01145 0.50 +1.8
258,756 + HGI48_RS01145 0.51 -0.5
258,756 + HGI48_RS01145 0.51 +0.2
258,798 + HGI48_RS01145 0.55 +1.0
258,799 - HGI48_RS01145 0.55 -0.5
258,799 - HGI48_RS01145 0.55 -0.6
258,879 + HGI48_RS01145 0.62 -0.1
258,895 + HGI48_RS01145 0.63 +0.0
258,895 + HGI48_RS01145 0.63 -0.2
258,895 + +0.2
258,949 + +2.2
258,949 + HGI48_RS01145 0.68 -0.2
258,949 + HGI48_RS01145 0.68 -0.4
258,949 + HGI48_RS01145 0.68 -0.0
258,950 - HGI48_RS01145 0.68 -0.9
258,950 - HGI48_RS01145 0.68 -1.1
259,026 + HGI48_RS01145 0.75 -0.0
259,026 + HGI48_RS01145 0.75 +1.0
259,026 + HGI48_RS01145 0.75 -0.1
259,027 - HGI48_RS01145 0.75 +1.5
259,060 - HGI48_RS01145 0.78 -0.6
259,060 - HGI48_RS01145 0.78 -1.0
259,071 + HGI48_RS01145 0.79 -1.4
259,072 - HGI48_RS01145 0.79 -0.4
259,072 - +1.6
259,072 - HGI48_RS01145 0.79 -1.4
259,072 - HGI48_RS01145 0.79 +0.5
259,084 + HGI48_RS01145 0.80 -0.2

Or see this region's nucleotide sequence