Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00700 and HGI48_RS00705 are separated by 238 nucleotides HGI48_RS00705 and HGI48_RS00710 are separated by 11 nucleotides HGI48_RS00710 and HGI48_RS00715 are separated by 75 nucleotides
HGI48_RS00700: HGI48_RS00700 - DNA repair protein RadC, at 163,079 to 163,744
_RS00700
HGI48_RS00705: HGI48_RS00705 - 50S ribosomal protein L28, at 163,983 to 164,219
_RS00705
HGI48_RS00710: HGI48_RS00710 - 50S ribosomal protein L33, at 164,231 to 164,398
_RS00710
HGI48_RS00715: HGI48_RS00715 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 164,474 to 165,283
_RS00715
Position (kb) 163
164
165 Strain fitness (log2 ratio) -1
0
1
2 at 163.048 kb on + strand at 163.049 kb on - strand at 163.055 kb on - strand at 163.241 kb on + strand, within HGI48_RS00700 at 163.304 kb on + strand at 163.304 kb on + strand, within HGI48_RS00700 at 163.304 kb on + strand, within HGI48_RS00700 at 163.403 kb on + strand, within HGI48_RS00700 at 163.403 kb on + strand, within HGI48_RS00700 at 163.403 kb on + strand, within HGI48_RS00700 at 163.403 kb on + strand, within HGI48_RS00700 at 163.513 kb on + strand, within HGI48_RS00700 at 163.589 kb on - strand, within HGI48_RS00700 at 163.650 kb on + strand at 163.651 kb on - strand, within HGI48_RS00700 at 163.651 kb on - strand, within HGI48_RS00700 at 163.750 kb on - strand at 163.750 kb on - strand at 163.775 kb on - strand at 164.315 kb on - strand, within HGI48_RS00710 at 164.537 kb on - strand at 164.546 kb on + strand at 164.546 kb on + strand at 164.548 kb on + strand at 164.584 kb on - strand, within HGI48_RS00715 at 164.645 kb on + strand, within HGI48_RS00715 at 164.646 kb on - strand, within HGI48_RS00715 at 164.646 kb on - strand, within HGI48_RS00715 at 164.646 kb on - strand, within HGI48_RS00715 at 164.692 kb on + strand at 164.693 kb on - strand, within HGI48_RS00715 at 164.723 kb on + strand, within HGI48_RS00715 at 164.724 kb on - strand, within HGI48_RS00715 at 164.724 kb on - strand, within HGI48_RS00715 at 164.787 kb on - strand, within HGI48_RS00715 at 164.788 kb on + strand, within HGI48_RS00715 at 164.788 kb on + strand, within HGI48_RS00715 at 164.788 kb on + strand, within HGI48_RS00715 at 164.788 kb on + strand, within HGI48_RS00715 at 164.984 kb on + strand, within HGI48_RS00715 at 164.984 kb on + strand, within HGI48_RS00715 at 164.985 kb on - strand, within HGI48_RS00715 at 164.985 kb on - strand, within HGI48_RS00715 at 164.985 kb on - strand, within HGI48_RS00715 at 164.985 kb on - strand, within HGI48_RS00715 at 164.985 kb on - strand, within HGI48_RS00715 at 165.070 kb on - strand, within HGI48_RS00715 at 165.070 kb on - strand at 165.087 kb on + strand, within HGI48_RS00715 at 165.088 kb on - strand, within HGI48_RS00715 at 165.088 kb on - strand, within HGI48_RS00715 at 165.088 kb on - strand, within HGI48_RS00715 at 165.174 kb on + strand, within HGI48_RS00715 at 165.175 kb on - strand, within HGI48_RS00715 at 165.175 kb on - strand, within HGI48_RS00715 at 165.182 kb on + strand, within HGI48_RS00715 at 165.182 kb on + strand, within HGI48_RS00715 at 165.182 kb on + strand, within HGI48_RS00715 at 165.183 kb on - strand, within HGI48_RS00715 at 165.183 kb on - strand, within HGI48_RS00715 at 165.183 kb on - strand, within HGI48_RS00715 at 165.183 kb on - strand, within HGI48_RS00715
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 163,048 + -0.1 163,049 - +1.8 163,055 - -0.1 163,241 + HGI48_RS00700 0.24 +2.2 163,304 + +0.7 163,304 + HGI48_RS00700 0.34 +0.7 163,304 + HGI48_RS00700 0.34 +0.7 163,403 + HGI48_RS00700 0.49 -0.8 163,403 + HGI48_RS00700 0.49 -0.8 163,403 + HGI48_RS00700 0.49 +0.0 163,403 + HGI48_RS00700 0.49 -0.8 163,513 + HGI48_RS00700 0.65 -0.5 163,589 - HGI48_RS00700 0.77 -1.3 163,650 + -0.3 163,651 - HGI48_RS00700 0.86 +1.6 163,651 - HGI48_RS00700 0.86 -1.1 163,750 - +0.0 163,750 - -0.8 163,775 - -1.3 164,315 - HGI48_RS00710 0.50 +1.0 164,537 - +0.9 164,546 + +1.8 164,546 + +0.9 164,548 + -0.2 164,584 - HGI48_RS00715 0.14 +0.8 164,645 + HGI48_RS00715 0.21 -1.1 164,646 - HGI48_RS00715 0.21 -0.8 164,646 - HGI48_RS00715 0.21 +0.3 164,646 - HGI48_RS00715 0.21 +0.2 164,692 + +2.2 164,693 - HGI48_RS00715 0.27 -1.6 164,723 + HGI48_RS00715 0.31 +1.2 164,724 - HGI48_RS00715 0.31 +1.1 164,724 - HGI48_RS00715 0.31 -1.1 164,787 - HGI48_RS00715 0.39 +0.7 164,788 + HGI48_RS00715 0.39 +0.7 164,788 + HGI48_RS00715 0.39 -0.6 164,788 + HGI48_RS00715 0.39 -0.1 164,788 + HGI48_RS00715 0.39 +1.0 164,984 + HGI48_RS00715 0.63 +1.0 164,984 + HGI48_RS00715 0.63 -1.6 164,985 - HGI48_RS00715 0.63 +1.2 164,985 - HGI48_RS00715 0.63 +0.8 164,985 - HGI48_RS00715 0.63 -1.3 164,985 - HGI48_RS00715 0.63 +0.2 164,985 - HGI48_RS00715 0.63 -0.8 165,070 - HGI48_RS00715 0.74 -0.3 165,070 - +0.7 165,087 + HGI48_RS00715 0.76 -0.6 165,088 - HGI48_RS00715 0.76 -0.3 165,088 - HGI48_RS00715 0.76 +0.1 165,088 - HGI48_RS00715 0.76 +1.5 165,174 + HGI48_RS00715 0.86 -0.8 165,175 - HGI48_RS00715 0.87 -0.2 165,175 - HGI48_RS00715 0.87 +0.5 165,182 + HGI48_RS00715 0.87 +1.6 165,182 + HGI48_RS00715 0.87 -0.3 165,182 + HGI48_RS00715 0.87 -1.1 165,183 - HGI48_RS00715 0.88 -1.3 165,183 - HGI48_RS00715 0.88 +0.9 165,183 - HGI48_RS00715 0.88 -0.0 165,183 - HGI48_RS00715 0.88 +0.9
Or see this region's nucleotide sequence