Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS21370 and HGI48_RS21375 are separated by 91 nucleotides HGI48_RS21375 and HGI48_RS21380 are separated by 378 nucleotides HGI48_RS21380 and HGI48_RS21385 are separated by 76 nucleotides
HGI48_RS21370: HGI48_RS21370 - transcriptional regulator AsnC, at 4,771,854 to 4,772,318
_RS21370
HGI48_RS21375: HGI48_RS21375 - FMN-binding protein MioC, at 4,772,410 to 4,772,853
_RS21375
HGI48_RS21380: HGI48_RS21380 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,773,232 to 4,775,121
_RS21380
HGI48_RS21385: HGI48_RS21385 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 4,775,198 to 4,775,818
_RS21385
Position (kb) 4773
4774
4775
4776 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4772.297 kb on + strand at 4772.298 kb on - strand at 4772.311 kb on + strand at 4772.311 kb on + strand at 4772.311 kb on + strand at 4772.311 kb on + strand at 4772.311 kb on + strand at 4772.312 kb on - strand at 4772.312 kb on - strand at 4772.312 kb on - strand at 4772.327 kb on + strand at 4772.327 kb on + strand at 4772.327 kb on + strand at 4772.328 kb on - strand at 4772.352 kb on - strand at 4772.352 kb on - strand at 4772.352 kb on - strand at 4772.352 kb on - strand at 4772.352 kb on - strand at 4772.352 kb on - strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.374 kb on + strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.375 kb on - strand at 4772.410 kb on - strand at 4772.458 kb on + strand at 4772.458 kb on + strand, within HGI48_RS21375 at 4772.459 kb on - strand, within HGI48_RS21375 at 4772.617 kb on + strand, within HGI48_RS21375 at 4772.618 kb on - strand, within HGI48_RS21375 at 4772.732 kb on + strand, within HGI48_RS21375 at 4772.732 kb on + strand, within HGI48_RS21375 at 4772.733 kb on - strand, within HGI48_RS21375 at 4772.733 kb on - strand at 4772.783 kb on + strand, within HGI48_RS21375 at 4772.784 kb on - strand at 4772.851 kb on + strand at 4772.873 kb on - strand at 4773.126 kb on + strand at 4773.169 kb on + strand at 4773.169 kb on + strand at 4773.169 kb on + strand at 4773.169 kb on + strand at 4773.169 kb on + strand at 4773.169 kb on + strand at 4773.169 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.173 kb on + strand at 4773.197 kb on + strand at 4773.197 kb on + strand at 4773.197 kb on + strand at 4773.197 kb on + strand at 4773.297 kb on + strand at 4773.410 kb on + strand at 4773.958 kb on + strand, within HGI48_RS21380 at 4773.958 kb on + strand, within HGI48_RS21380 at 4773.958 kb on + strand, within HGI48_RS21380 at 4773.958 kb on + strand at 4773.958 kb on + strand, within HGI48_RS21380 at 4774.025 kb on - strand, within HGI48_RS21380 at 4774.190 kb on + strand, within HGI48_RS21380 at 4774.456 kb on + strand, within HGI48_RS21380 at 4774.456 kb on + strand, within HGI48_RS21380 at 4774.518 kb on + strand, within HGI48_RS21380 at 4774.595 kb on + strand at 4774.769 kb on + strand, within HGI48_RS21380 at 4774.769 kb on + strand, within HGI48_RS21380 at 4774.882 kb on + strand, within HGI48_RS21380 at 4774.882 kb on + strand, within HGI48_RS21380 at 4774.882 kb on + strand, within HGI48_RS21380 at 4775.100 kb on + strand at 4775.101 kb on - strand at 4775.101 kb on - strand at 4775.101 kb on - strand at 4775.101 kb on - strand at 4775.101 kb on - strand at 4775.136 kb on + strand at 4775.136 kb on + strand at 4775.136 kb on + strand at 4775.136 kb on + strand at 4775.136 kb on + strand at 4775.137 kb on - strand at 4775.137 kb on - strand at 4775.216 kb on - strand at 4775.277 kb on - strand, within HGI48_RS21385 at 4775.309 kb on + strand, within HGI48_RS21385 at 4775.309 kb on + strand, within HGI48_RS21385 at 4775.309 kb on + strand, within HGI48_RS21385 at 4775.310 kb on - strand at 4775.310 kb on - strand, within HGI48_RS21385 at 4775.310 kb on - strand, within HGI48_RS21385 at 4775.311 kb on + strand, within HGI48_RS21385 at 4775.312 kb on - strand, within HGI48_RS21385 at 4775.325 kb on + strand, within HGI48_RS21385 at 4775.325 kb on + strand, within HGI48_RS21385 at 4775.325 kb on + strand, within HGI48_RS21385 at 4775.325 kb on + strand at 4775.356 kb on + strand, within HGI48_RS21385 at 4775.356 kb on + strand, within HGI48_RS21385 at 4775.556 kb on + strand at 4775.635 kb on + strand, within HGI48_RS21385 at 4775.635 kb on + strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand, within HGI48_RS21385 at 4775.685 kb on - strand at 4775.807 kb on - strand at 4775.847 kb on + strand at 4775.847 kb on + strand at 4775.847 kb on + strand at 4775.847 kb on + strand at 4775.847 kb on + strand at 4775.848 kb on - strand at 4775.848 kb on - strand at 4775.848 kb on - strand at 4775.848 kb on - strand at 4775.848 kb on - strand at 4775.854 kb on - strand at 4775.871 kb on - strand at 4775.875 kb on - strand at 4775.886 kb on - strand at 4775.893 kb on + strand at 4775.894 kb on - strand at 4775.935 kb on + strand at 4775.936 kb on - strand at 4775.936 kb on - strand at 4775.936 kb on - strand at 4775.988 kb on + strand at 4775.988 kb on + strand at 4775.989 kb on - strand at 4776.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,772,297 + -0.2 4,772,298 - -1.0 4,772,311 + +0.5 4,772,311 + +0.1 4,772,311 + +0.9 4,772,311 + -0.9 4,772,311 + +0.9 4,772,312 - +0.5 4,772,312 - -0.1 4,772,312 - -0.6 4,772,327 + +0.9 4,772,327 + -0.2 4,772,327 + -1.1 4,772,328 - -0.5 4,772,352 - +0.0 4,772,352 - -0.9 4,772,352 - -0.5 4,772,352 - -0.7 4,772,352 - +0.5 4,772,352 - +0.5 4,772,374 + +0.4 4,772,374 + -0.2 4,772,374 + -0.5 4,772,374 + -2.5 4,772,374 + +0.9 4,772,374 + -1.9 4,772,374 + -0.1 4,772,374 + +0.5 4,772,374 + +0.9 4,772,375 - +0.4 4,772,375 - -0.2 4,772,375 - -0.4 4,772,375 - -2.6 4,772,375 - -0.6 4,772,375 - -2.2 4,772,375 - -1.2 4,772,375 - +0.7 4,772,375 - -0.2 4,772,410 - -0.6 4,772,458 + +1.9 4,772,458 + HGI48_RS21375 0.11 +1.7 4,772,459 - HGI48_RS21375 0.11 -1.5 4,772,617 + HGI48_RS21375 0.47 +0.9 4,772,618 - HGI48_RS21375 0.47 -2.1 4,772,732 + HGI48_RS21375 0.73 +0.2 4,772,732 + HGI48_RS21375 0.73 -1.3 4,772,733 - HGI48_RS21375 0.73 -1.1 4,772,733 - +1.9 4,772,783 + HGI48_RS21375 0.84 -1.3 4,772,784 - +0.4 4,772,851 + -0.5 4,772,873 - -1.1 4,773,126 + +0.3 4,773,169 + -1.6 4,773,169 + +0.4 4,773,169 + -0.3 4,773,169 + +0.8 4,773,169 + -0.6 4,773,169 + -0.1 4,773,169 + +0.4 4,773,173 + +1.5 4,773,173 + -0.6 4,773,173 + +2.2 4,773,173 + +0.6 4,773,173 + +0.7 4,773,173 + -0.5 4,773,173 + -0.1 4,773,173 + +0.5 4,773,197 + +0.9 4,773,197 + -0.9 4,773,197 + -0.6 4,773,197 + -0.0 4,773,297 + -0.1 4,773,410 + -0.1 4,773,958 + HGI48_RS21380 0.38 -2.2 4,773,958 + HGI48_RS21380 0.38 +1.4 4,773,958 + HGI48_RS21380 0.38 -1.6 4,773,958 + +1.4 4,773,958 + HGI48_RS21380 0.38 -1.6 4,774,025 - HGI48_RS21380 0.42 +1.7 4,774,190 + HGI48_RS21380 0.51 -1.9 4,774,456 + HGI48_RS21380 0.65 -0.6 4,774,456 + HGI48_RS21380 0.65 -0.2 4,774,518 + HGI48_RS21380 0.68 -1.2 4,774,595 + +0.9 4,774,769 + HGI48_RS21380 0.81 -1.1 4,774,769 + HGI48_RS21380 0.81 -0.6 4,774,882 + HGI48_RS21380 0.87 -1.6 4,774,882 + HGI48_RS21380 0.87 -1.6 4,774,882 + HGI48_RS21380 0.87 -1.9 4,775,100 + -0.9 4,775,101 - -0.1 4,775,101 - +0.2 4,775,101 - +0.2 4,775,101 - -0.6 4,775,101 - -2.6 4,775,136 + +0.9 4,775,136 + +0.4 4,775,136 + +0.4 4,775,136 + -0.6 4,775,136 + -1.1 4,775,137 - -1.4 4,775,137 - -0.6 4,775,216 - -1.1 4,775,277 - HGI48_RS21385 0.13 +0.2 4,775,309 + HGI48_RS21385 0.18 -0.1 4,775,309 + HGI48_RS21385 0.18 -0.2 4,775,309 + HGI48_RS21385 0.18 -0.4 4,775,310 - -0.6 4,775,310 - HGI48_RS21385 0.18 +0.9 4,775,310 - HGI48_RS21385 0.18 -0.1 4,775,311 + HGI48_RS21385 0.18 +1.4 4,775,312 - HGI48_RS21385 0.18 +0.9 4,775,325 + HGI48_RS21385 0.20 -1.4 4,775,325 + HGI48_RS21385 0.20 +1.2 4,775,325 + HGI48_RS21385 0.20 -0.6 4,775,325 + -0.1 4,775,356 + HGI48_RS21385 0.25 -0.4 4,775,356 + HGI48_RS21385 0.25 -2.1 4,775,556 + +2.4 4,775,635 + HGI48_RS21385 0.70 +1.2 4,775,635 + HGI48_RS21385 0.70 -0.5 4,775,685 - HGI48_RS21385 0.78 -0.9 4,775,685 - HGI48_RS21385 0.78 -1.1 4,775,685 - HGI48_RS21385 0.78 -1.4 4,775,685 - HGI48_RS21385 0.78 -1.4 4,775,685 - HGI48_RS21385 0.78 -1.6 4,775,685 - HGI48_RS21385 0.78 -1.9 4,775,685 - HGI48_RS21385 0.78 +0.4 4,775,685 - +0.4 4,775,807 - -1.1 4,775,847 + -0.6 4,775,847 + +0.1 4,775,847 + -0.1 4,775,847 + +1.9 4,775,847 + -0.1 4,775,848 - -0.2 4,775,848 - -1.4 4,775,848 - -1.9 4,775,848 - +0.4 4,775,848 - -0.6 4,775,854 - -0.5 4,775,871 - +0.4 4,775,875 - +0.3 4,775,886 - +2.9 4,775,893 + -1.4 4,775,894 - -0.4 4,775,935 + -0.2 4,775,936 - +0.2 4,775,936 - -0.3 4,775,936 - -0.9 4,775,988 + -0.5 4,775,988 + -2.5 4,775,989 - -0.6 4,776,056 + +0.4
Or see this region's nucleotide sequence