Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20835

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,650,510	+		HGI48_RS20830	0.61	-1.4
4,650,510	+		HGI48_RS20830	0.61	-2.6
4,650,511	-		HGI48_RS20830	0.61	-0.5
4,650,511	-		HGI48_RS20830	0.61	-0.0
4,650,511	-		HGI48_RS20830	0.61	+1.4
4,650,619	+		HGI48_RS20830	0.68	-0.2
4,650,626	-		HGI48_RS20830	0.69	-1.2
4,650,695	-				-0.0
4,650,695	-		HGI48_RS20830	0.74	+0.7
4,650,711	+		HGI48_RS20830	0.75	+0.7
4,650,711	+		HGI48_RS20830	0.75	+0.3
4,650,711	+		HGI48_RS20830	0.75	+1.1
4,650,712	-		HGI48_RS20830	0.75	+0.3
4,650,712	-		HGI48_RS20830	0.75	-0.0
4,650,712	-				+1.4
4,650,712	-		HGI48_RS20830	0.75	-0.2
4,650,712	-		HGI48_RS20830	0.75	-0.9
4,650,718	+		HGI48_RS20830	0.75	+1.5
4,650,718	+		HGI48_RS20830	0.75	+1.0
4,650,718	+		HGI48_RS20830	0.75	+0.2
4,650,718	+		HGI48_RS20830	0.75	-0.0
4,650,719	-		HGI48_RS20830	0.75	-1.4
4,650,719	-				+2.0
4,650,719	-		HGI48_RS20830	0.75	-0.4
4,650,719	-		HGI48_RS20830	0.75	-1.2
4,650,726	+		HGI48_RS20830	0.76	+1.5
4,650,726	+		HGI48_RS20830	0.76	-0.4
4,650,726	+		HGI48_RS20830	0.76	-0.4
4,650,727	-		HGI48_RS20830	0.76	-0.7
4,650,902	+				-0.6
4,650,903	-		HGI48_RS20830	0.88	-0.2
4,650,903	-		HGI48_RS20830	0.88	-0.4
4,650,952	+				+1.5
4,650,952	+				+1.2
4,650,998	+				-0.0
4,650,998	+				-0.0
4,650,999	-				+0.2
4,651,088	+				-0.7
4,651,107	+				+0.1
4,651,108	-				-0.1
4,651,108	-				-1.5
4,651,108	-				-1.6
4,651,108	-				+2.0
4,651,113	-				-0.4
4,651,113	-				+0.6
4,651,160	+				-1.0
4,651,160	+				+0.1
4,651,161	-				-1.4
4,651,161	-				+1.3
4,651,242	+				-1.0
4,651,242	+				-0.3
4,651,242	+				+0.4
4,651,243	-				-1.8
4,651,243	-				+1.5
4,651,243	-				+0.4
4,651,243	-				-0.6
4,651,243	-				-1.0
4,651,243	-				+0.7
4,651,243	-				-0.5
4,651,243	-				+1.8
4,651,304	+				+1.3
4,651,304	+				+1.0
4,651,305	-				-1.0
4,651,305	-				-0.3
4,651,315	-				-1.0
4,651,345	+				-0.5
4,651,346	-				+0.4
4,651,346	-				-0.3
4,651,356	+				+0.7
4,651,357	-				+0.2
4,651,375	+				-0.4
4,651,375	+				-0.6
4,651,376	-				-0.4
4,651,376	-				+0.3
4,651,397	+				-0.0
4,651,397	+				+1.0
4,651,424	-				+2.3
4,651,429	+				-1.8
4,651,509	-				-0.4
4,651,509	-				+0.2
4,651,509	-				-0.3
4,651,590	+				+0.9
4,651,743	+		HGI48_RS20835	0.18	+0.6
4,651,808	-		HGI48_RS20835	0.23	-1.0
4,651,874	+		HGI48_RS20835	0.28	-0.0
4,651,875	-				+0.4
4,651,875	-				+1.5
4,651,875	-		HGI48_RS20835	0.28	-1.6
4,651,875	-		HGI48_RS20835	0.28	-1.2
4,651,941	+		HGI48_RS20835	0.33	-0.4
4,651,971	+		HGI48_RS20835	0.36	-0.0
4,651,972	-		HGI48_RS20835	0.36	+1.0
4,652,008	+		HGI48_RS20835	0.39	-0.0
4,652,033	+		HGI48_RS20835	0.41	+0.4
4,652,034	-		HGI48_RS20835	0.41	+0.6
4,652,055	+		HGI48_RS20835	0.42	-0.7
4,652,076	+		HGI48_RS20835	0.44	-0.2
4,652,077	-		HGI48_RS20835	0.44	-0.2
4,652,106	+		HGI48_RS20835	0.46	-1.0
4,652,106	+				+1.0
4,652,106	+		HGI48_RS20835	0.46	-1.5
4,652,107	-		HGI48_RS20835	0.46	-1.0
4,652,107	-		HGI48_RS20835	0.46	-0.4
4,652,117	+		HGI48_RS20835	0.47	+0.7
4,652,117	+		HGI48_RS20835	0.47	+0.6
4,652,117	+		HGI48_RS20835	0.47	-1.5
4,652,117	+		HGI48_RS20835	0.47	-0.6
4,652,117	+		HGI48_RS20835	0.47	-2.0
4,652,118	-				-0.0
4,652,118	-		HGI48_RS20835	0.47	-0.4
4,652,118	-		HGI48_RS20835	0.47	-0.0
4,652,128	-				+1.5
4,652,165	+		HGI48_RS20835	0.51	+0.2
4,652,165	+		HGI48_RS20835	0.51	-0.8
4,652,166	-		HGI48_RS20835	0.51	-0.2
4,652,170	-		HGI48_RS20835	0.51	-1.0
4,652,170	-		HGI48_RS20835	0.51	-0.0
4,652,170	-		HGI48_RS20835	0.51	-0.4
4,652,379	+		HGI48_RS20835	0.68	+0.8
4,652,380	-		HGI48_RS20835	0.68	-1.6
4,652,548	+		HGI48_RS20835	0.81	-0.3
4,652,548	+		HGI48_RS20835	0.81	-1.0
4,652,548	+		HGI48_RS20835	0.81	-0.4
4,652,549	-		HGI48_RS20835	0.81	-1.2
4,652,549	-		HGI48_RS20835	0.81	+0.4
4,652,631	+		HGI48_RS20835	0.87	-1.0
4,652,665	+		HGI48_RS20835	0.90	-1.8
4,652,666	-		HGI48_RS20835	0.90	+1.8
4,652,752	+				-1.0
4,652,874	-				+2.3
4,652,903	-				-0.0
4,652,910	+				-0.1
4,652,911	-				-0.2
4,652,911	-				-0.5
4,652,986	-				+1.0
4,653,047	+				+1.8
4,653,127	+				+0.5
4,653,127	+				-0.1
4,653,128	-				+0.4
4,653,181	+				-0.1
4,653,202	+				-0.0
4,653,243	+				-0.6
4,653,243	+				+2.0
4,653,243	+				-0.1
4,653,243	+				+0.5
4,653,243	+				-0.2
4,653,243	+				+0.7
4,653,244	-				-0.2
4,653,246	+				-0.6
4,653,246	+				-1.0
4,653,246	+				+0.2
4,653,247	-				+1.8
4,653,247	-				-0.6
4,653,247	-				+0.8
4,653,317	+		HGI48_RS20840	0.12	-2.2
4,653,317	+		HGI48_RS20840	0.12	+0.3
4,653,336	+		HGI48_RS20840	0.14	-1.6
4,653,337	-		HGI48_RS20840	0.14	-0.0
4,653,337	-		HGI48_RS20840	0.14	-1.7
4,653,393	+		HGI48_RS20840	0.20	+0.6
4,653,394	-		HGI48_RS20840	0.20	-1.1
4,653,394	-		HGI48_RS20840	0.20	-0.2
4,653,397	+		HGI48_RS20840	0.20	+0.8
4,653,398	-		HGI48_RS20840	0.20	+0.5
4,653,398	-		HGI48_RS20840	0.20	+0.7
4,653,405	+		HGI48_RS20840	0.21	-1.0
4,653,405	+		HGI48_RS20840	0.21	-1.8
4,653,444	+		HGI48_RS20840	0.25	-0.2
4,653,444	+		HGI48_RS20840	0.25	-0.4
4,653,444	+		HGI48_RS20840	0.25	+0.6
4,653,445	-		HGI48_RS20840	0.25	-0.4
4,653,445	-		HGI48_RS20840	0.25	-0.5
4,653,445	-		HGI48_RS20840	0.25	-1.6
4,653,445	-		HGI48_RS20840	0.25	-0.8
4,653,450	+		HGI48_RS20840	0.25	+0.4
4,653,450	+		HGI48_RS20840	0.25	+1.5
4,653,451	-		HGI48_RS20840	0.25	-1.0
4,653,456	+		HGI48_RS20840	0.26	-0.6
4,653,456	+		HGI48_RS20840	0.26	-1.0
4,653,456	+		HGI48_RS20840	0.26	-1.4
4,653,457	-		HGI48_RS20840	0.26	-0.5
4,653,457	-		HGI48_RS20840	0.26	+0.6
4,653,457	-				+1.4
4,653,457	-		HGI48_RS20840	0.26	-0.9
4,653,457	-		HGI48_RS20840	0.26	+1.2
4,653,466	+		HGI48_RS20840	0.27	-0.2
4,653,466	+		HGI48_RS20840	0.27	-0.8
4,653,481	-		HGI48_RS20840	0.28	-1.4
4,653,693	+		HGI48_RS20840	0.50	+0.8
4,653,693	+		HGI48_RS20840	0.50	+0.2
4,653,693	+		HGI48_RS20840	0.50	-0.8
4,653,693	+		HGI48_RS20840	0.50	+1.0
4,653,693	+		HGI48_RS20840	0.50	-0.2
4,653,693	+		HGI48_RS20840	0.50	-0.2
4,653,693	+		HGI48_RS20840	0.50	-0.0
4,653,693	+		HGI48_RS20840	0.50	+0.2
4,653,693	+		HGI48_RS20840	0.50	+1.0
4,653,693	+		HGI48_RS20840	0.50	-0.0
4,653,693	+		HGI48_RS20840	0.50	+1.1
4,653,693	+		HGI48_RS20840	0.50	+0.1
4,653,693	+		HGI48_RS20840	0.50	-1.6
4,653,693	+		HGI48_RS20840	0.50	-0.4
4,653,693	+		HGI48_RS20840	0.50	+1.3
4,653,693	+		HGI48_RS20840	0.50	-1.4
4,653,693	+		HGI48_RS20840	0.50	-2.4
4,653,693	+				+0.4
4,653,693	+		HGI48_RS20840	0.50	-0.6
4,653,693	+		HGI48_RS20840	0.50	+0.5
4,653,693	+		HGI48_RS20840	0.50	-2.0
4,653,693	+		HGI48_RS20840	0.50	+1.2
4,653,694	-		HGI48_RS20840	0.50	-1.1
4,653,694	-		HGI48_RS20840	0.50	+1.5
4,653,694	-		HGI48_RS20840	0.50	-1.0
4,653,694	-		HGI48_RS20840	0.50	-0.4
4,653,694	-		HGI48_RS20840	0.50	-0.3
4,653,694	-		HGI48_RS20840	0.50	+0.4
4,653,694	-		HGI48_RS20840	0.50	-1.4
4,653,694	-		HGI48_RS20840	0.50	+1.9
4,653,694	-		HGI48_RS20840	0.50	-0.0
4,653,694	-		HGI48_RS20840	0.50	-0.4
4,653,694	-		HGI48_RS20840	0.50	+0.2
4,653,694	-		HGI48_RS20840	0.50	-0.0
4,653,694	-		HGI48_RS20840	0.50	-0.1
4,653,694	-				+0.4
4,653,694	-		HGI48_RS20840	0.50	-0.4
4,653,694	-		HGI48_RS20840	0.50	-0.6
4,653,715	-		HGI48_RS20840	0.52	-0.2
4,653,757	+		HGI48_RS20840	0.56	-2.5
4,653,757	+		HGI48_RS20840	0.56	+0.3
4,653,757	+		HGI48_RS20840	0.56	+1.3
4,653,757	+		HGI48_RS20840	0.56	+0.5
4,653,758	-		HGI48_RS20840	0.56	+0.7
4,653,758	-		HGI48_RS20840	0.56	+1.3
4,653,758	-		HGI48_RS20840	0.56	+0.1
4,653,758	-		HGI48_RS20840	0.56	-0.3
4,653,758	-				+2.3