Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20205

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,511,039	+		HGI48_RS20200	0.26	-1.2
4,511,039	+		HGI48_RS20200	0.26	+0.3
4,511,054	+		HGI48_RS20200	0.28	-0.1
4,511,054	+		HGI48_RS20200	0.28	-2.2
4,511,054	+		HGI48_RS20200	0.28	+0.5
4,511,055	-				+2.4
4,511,055	-				-0.6
4,511,083	-		HGI48_RS20200	0.30	-1.9
4,511,100	+				+0.4
4,511,100	+		HGI48_RS20200	0.32	+0.4
4,511,101	-		HGI48_RS20200	0.32	+0.1
4,511,119	+		HGI48_RS20200	0.33	+0.9
4,511,119	+		HGI48_RS20200	0.33	-0.1
4,511,138	-		HGI48_RS20200	0.35	-0.9
4,511,138	-		HGI48_RS20200	0.35	+0.3
4,511,341	+		HGI48_RS20200	0.53	+0.1
4,511,342	-		HGI48_RS20200	0.53	-0.9
4,511,376	+		HGI48_RS20200	0.56	+1.4
4,511,377	-		HGI48_RS20200	0.56	+0.5
4,511,441	+		HGI48_RS20200	0.62	+0.0
4,511,441	+		HGI48_RS20200	0.62	+0.1
4,511,441	+		HGI48_RS20200	0.62	+0.0
4,511,441	+		HGI48_RS20200	0.62	-1.8
4,511,442	-		HGI48_RS20200	0.62	-1.4
4,511,541	+		HGI48_RS20200	0.71	-0.1
4,511,542	-		HGI48_RS20200	0.71	+0.9
4,511,549	+		HGI48_RS20200	0.71	-0.4
4,511,549	+		HGI48_RS20200	0.71	-0.5
4,511,549	+		HGI48_RS20200	0.71	-1.3
4,511,549	+		HGI48_RS20200	0.71	-1.1
4,511,549	+				+1.9
4,511,550	-		HGI48_RS20200	0.72	-0.3
4,511,550	-		HGI48_RS20200	0.72	+1.4
4,511,550	-		HGI48_RS20200	0.72	-0.8
4,511,691	+		HGI48_RS20200	0.84	+0.1
4,511,716	+		HGI48_RS20200	0.86	+0.5
4,511,717	-				-0.6
4,511,984	-				-0.6
4,512,119	-		HGI48_RS20205	0.11	+0.1
4,512,127	-		HGI48_RS20205	0.12	-1.2
4,512,132	+		HGI48_RS20205	0.13	+0.6
4,512,202	-		HGI48_RS20205	0.19	+0.5
4,512,272	+		HGI48_RS20205	0.26	-1.3
4,512,323	+		HGI48_RS20205	0.31	+0.1
4,512,323	+		HGI48_RS20205	0.31	+0.5
4,512,323	+		HGI48_RS20205	0.31	+0.2
4,512,323	+		HGI48_RS20205	0.31	-1.5
4,512,324	-				+0.9
4,512,324	-		HGI48_RS20205	0.31	+2.5
4,512,346	+		HGI48_RS20205	0.33	-0.5
4,512,347	-		HGI48_RS20205	0.33	-1.5
4,512,371	+		HGI48_RS20205	0.36	-0.4
4,512,510	+				+0.9
4,512,510	+		HGI48_RS20205	0.49	-0.1
4,512,510	+				+0.9
4,512,510	+		HGI48_RS20205	0.49	-0.1
4,512,510	+		HGI48_RS20205	0.49	-1.6
4,512,511	-		HGI48_RS20205	0.49	+2.1
4,512,511	-		HGI48_RS20205	0.49	-0.6
4,512,511	-		HGI48_RS20205	0.49	-0.1
4,512,511	-		HGI48_RS20205	0.49	-0.1
4,512,598	+		HGI48_RS20205	0.58	-0.6
4,512,599	-		HGI48_RS20205	0.58	-2.5
4,512,608	-		HGI48_RS20205	0.59	-1.0
4,512,675	+		HGI48_RS20205	0.65	-1.6
4,512,676	-		HGI48_RS20205	0.65	-0.2
4,512,676	-		HGI48_RS20205	0.65	+0.2
4,512,676	-		HGI48_RS20205	0.65	+0.6
4,512,741	+				+2.5
4,512,742	-		HGI48_RS20205	0.71	-0.2
4,512,742	-		HGI48_RS20205	0.71	-0.2
4,512,742	-		HGI48_RS20205	0.71	-2.1
4,512,900	+		HGI48_RS20205	0.87	+1.9
4,512,901	-		HGI48_RS20205	0.87	-0.3
4,512,905	+		HGI48_RS20205	0.87	-0.8
4,513,056	+				+0.3
4,513,056	+				-1.3
4,513,057	-				-1.4
4,513,057	-				-0.3
4,513,092	+				-0.3
4,513,150	+				+0.6
4,513,150	+				-2.2
4,513,150	+				-0.1
4,513,151	-				+0.9
4,513,189	+				-1.0
4,513,189	+				+1.2
4,513,190	-				+0.5
4,513,190	-				-0.8
4,513,190	-				-1.4
4,513,239	+		HGI48_RS20210	0.12	-0.1
4,513,239	+		HGI48_RS20210	0.12	-0.5
4,513,239	+		HGI48_RS20210	0.12	+0.3
4,513,239	+		HGI48_RS20210	0.12	+1.2
4,513,240	-		HGI48_RS20210	0.12	-0.5
4,513,240	-		HGI48_RS20210	0.12	+0.6
4,513,303	+		HGI48_RS20210	0.18	-0.4
4,513,304	-		HGI48_RS20210	0.18	+0.7
4,513,304	-		HGI48_RS20210	0.18	+0.6
4,513,349	+		HGI48_RS20210	0.22	-1.4
4,513,349	+		HGI48_RS20210	0.22	-1.6
4,513,349	+		HGI48_RS20210	0.22	-0.5
4,513,349	+		HGI48_RS20210	0.22	-0.4
4,513,349	+		HGI48_RS20210	0.22	-1.3
4,513,350	-		HGI48_RS20210	0.22	-0.1
4,513,350	-		HGI48_RS20210	0.22	+0.5
4,513,350	-		HGI48_RS20210	0.22	-1.9
4,513,350	-		HGI48_RS20210	0.22	-1.4
4,513,350	-		HGI48_RS20210	0.22	+1.3
4,513,350	-		HGI48_RS20210	0.22	-0.1
4,513,360	+		HGI48_RS20210	0.23	-1.6
4,513,361	-		HGI48_RS20210	0.23	-1.1
4,513,396	+				-0.6
4,513,396	+		HGI48_RS20210	0.26	-0.8
4,513,397	-		HGI48_RS20210	0.27	+1.1
4,513,480	+		HGI48_RS20210	0.34	-1.0
4,513,564	+		HGI48_RS20210	0.42	+0.4
4,513,564	+		HGI48_RS20210	0.42	+1.1
4,513,564	+		HGI48_RS20210	0.42	-0.6
4,513,564	+		HGI48_RS20210	0.42	+0.0
4,513,564	+		HGI48_RS20210	0.42	-0.1
4,513,564	+		HGI48_RS20210	0.42	+0.4
4,513,564	+				+0.4
4,513,565	-		HGI48_RS20210	0.42	-1.6
4,513,565	-		HGI48_RS20210	0.42	+1.3
4,513,565	-		HGI48_RS20210	0.42	-0.9
4,513,566	+		HGI48_RS20210	0.42	+0.0
4,513,665	+		HGI48_RS20210	0.51	-0.5
4,513,666	-		HGI48_RS20210	0.52	+1.3
4,513,666	-		HGI48_RS20210	0.52	+0.3
4,513,666	-		HGI48_RS20210	0.52	-1.8
4,513,666	-		HGI48_RS20210	0.52	-1.2
4,513,742	-		HGI48_RS20210	0.59	-1.2
4,513,785	+		HGI48_RS20210	0.63	+0.4
4,513,786	-		HGI48_RS20210	0.63	-1.7
4,513,786	-		HGI48_RS20210	0.63	+0.5
4,513,828	+		HGI48_RS20210	0.67	+0.6
4,513,829	-		HGI48_RS20210	0.67	-0.4
4,513,829	-		HGI48_RS20210	0.67	-0.5
4,513,829	-		HGI48_RS20210	0.67	-1.1
4,513,829	-		HGI48_RS20210	0.67	-0.3
4,513,830	+		HGI48_RS20210	0.67	+0.1
4,513,830	+		HGI48_RS20210	0.67	+1.0
4,513,830	+		HGI48_RS20210	0.67	+0.3
4,513,831	-		HGI48_RS20210	0.67	-0.1
4,513,844	+		HGI48_RS20210	0.68	-1.5
4,513,844	+		HGI48_RS20210	0.68	-0.7
4,513,844	+		HGI48_RS20210	0.68	-1.3
4,513,844	+		HGI48_RS20210	0.68	-1.4
4,513,845	-		HGI48_RS20210	0.68	+0.4
4,513,845	-		HGI48_RS20210	0.68	-0.4
4,513,974	+				+0.9
4,513,975	-		HGI48_RS20210	0.80	+0.2
4,514,034	+		HGI48_RS20210	0.86	-0.5
4,514,034	+				+0.4
4,514,034	+		HGI48_RS20210	0.86	+0.2
4,514,035	-		HGI48_RS20210	0.86	-1.1