Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20105

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,493,638	+				-0.3
4,493,638	+				-0.6
4,493,638	+				-0.1
4,493,638	+				-0.1
4,493,638	+				+1.7
4,493,639	-				+0.9
4,493,639	-				-1.1
4,493,639	-				-0.5
4,493,639	-				-0.1
4,493,654	+				-0.4
4,493,778	-				+1.9
4,493,837	+		HGI48_RS20100	0.25	+1.2
4,493,837	+		HGI48_RS20100	0.25	-2.8
4,493,837	+		HGI48_RS20100	0.25	-0.5
4,493,837	+		HGI48_RS20100	0.25	+0.9
4,493,837	+		HGI48_RS20100	0.25	+0.9
4,493,837	+		HGI48_RS20100	0.25	+1.4
4,493,838	-		HGI48_RS20100	0.25	+1.2
4,493,838	-		HGI48_RS20100	0.25	+1.5
4,493,838	-		HGI48_RS20100	0.25	-0.6
4,494,090	+		HGI48_RS20100	0.58	+0.2
4,494,090	+		HGI48_RS20100	0.58	+0.7
4,494,091	-		HGI48_RS20100	0.58	-0.1
4,494,145	+		HGI48_RS20100	0.65	-1.2
4,494,145	+		HGI48_RS20100	0.65	+0.5
4,494,145	+		HGI48_RS20100	0.65	+0.7
4,494,146	-		HGI48_RS20100	0.65	-1.4
4,494,184	+		HGI48_RS20100	0.70	-0.6
4,494,184	+		HGI48_RS20100	0.70	-1.4
4,494,184	+		HGI48_RS20100	0.70	-1.9
4,494,184	+		HGI48_RS20100	0.70	+0.6
4,494,185	-				+0.9
4,494,185	-				+0.4
4,494,201	-		HGI48_RS20100	0.72	-2.1
4,494,202	+		HGI48_RS20100	0.73	-0.1
4,494,203	-				-0.1
4,494,236	+		HGI48_RS20100	0.77	+0.1
4,494,236	+		HGI48_RS20100	0.77	+0.8
4,494,237	-		HGI48_RS20100	0.77	+0.1
4,494,237	-		HGI48_RS20100	0.77	-0.2
4,494,237	-		HGI48_RS20100	0.77	-0.8
4,494,475	+				-0.4
4,494,475	+				-0.9
4,494,476	-				+0.9
4,494,476	-				-1.9
4,494,496	+		HGI48_RS20105	0.11	+1.5
4,494,496	+		HGI48_RS20105	0.11	+0.0
4,494,611	+		HGI48_RS20105	0.28	-1.4
4,494,612	-		HGI48_RS20105	0.29	+0.7
4,494,623	+		HGI48_RS20105	0.30	-1.6
4,494,623	+				+0.4
4,494,624	-		HGI48_RS20105	0.30	+0.5
4,494,624	-		HGI48_RS20105	0.30	-0.3
4,494,624	-		HGI48_RS20105	0.30	-0.1
4,494,624	-		HGI48_RS20105	0.30	+0.1
4,494,778	+		HGI48_RS20105	0.53	+1.8
4,494,778	+		HGI48_RS20105	0.53	-0.3
4,494,778	+				+0.9
4,494,778	+		HGI48_RS20105	0.53	+0.2
4,494,778	+		HGI48_RS20105	0.53	-0.6
4,494,779	-				+0.9
4,494,779	-		HGI48_RS20105	0.53	+0.6
4,494,779	-		HGI48_RS20105	0.53	+0.4
4,494,779	-		HGI48_RS20105	0.53	+0.4
4,494,798	-		HGI48_RS20105	0.56	-0.1
4,494,798	-		HGI48_RS20105	0.56	-0.1
4,494,868	+		HGI48_RS20105	0.67	+1.6
4,494,868	+				-0.6
4,494,868	+		HGI48_RS20105	0.67	-0.5
4,494,869	-		HGI48_RS20105	0.67	-0.5
4,494,869	-		HGI48_RS20105	0.67	-1.6
4,494,879	+		HGI48_RS20105	0.68	-0.5
4,494,880	-		HGI48_RS20105	0.68	-0.7
4,494,880	-		HGI48_RS20105	0.68	-1.4
4,494,880	-		HGI48_RS20105	0.68	-0.2
4,494,917	+		HGI48_RS20105	0.74	-1.5
4,494,917	+				-0.1
4,494,918	-		HGI48_RS20105	0.74	+0.6
4,494,918	-		HGI48_RS20105	0.74	-1.4
4,494,919	+		HGI48_RS20105	0.74	+0.7
4,494,920	-		HGI48_RS20105	0.74	-0.4
4,495,039	+				-0.1
4,495,039	+				-0.4
4,495,039	+				-1.0
4,495,039	+				-0.9
4,495,039	+				-1.1
4,495,039	+				-0.9
4,495,039	+				-0.3
4,495,040	-				+1.8
4,495,040	-				+0.9
4,495,040	-				-0.4
4,495,040	-				+0.9
4,495,040	-				+0.1
4,495,040	-				-0.6
4,495,072	+				-0.1
4,495,098	+				+0.4
4,495,098	+				-0.4
4,495,099	-				-0.2
4,495,105	-				-1.1
4,495,396	+		HGI48_RS20110	0.30	+1.8
4,495,396	+		HGI48_RS20110	0.30	-1.3
4,495,396	+				+0.9
4,495,396	+		HGI48_RS20110	0.30	-0.6
4,495,396	+		HGI48_RS20110	0.30	-0.1
4,495,396	+		HGI48_RS20110	0.30	-1.1
4,495,396	+				+2.2
4,495,450	+		HGI48_RS20110	0.37	-0.1
4,495,451	-		HGI48_RS20110	0.37	-1.6
4,495,454	+				+1.4
4,495,454	+		HGI48_RS20110	0.37	+0.0
4,495,454	+		HGI48_RS20110	0.37	-1.4
4,495,454	+		HGI48_RS20110	0.37	-0.9
4,495,454	+		HGI48_RS20110	0.37	+0.4
4,495,454	+		HGI48_RS20110	0.37	-1.5
4,495,455	-		HGI48_RS20110	0.37	-1.9
4,495,455	-		HGI48_RS20110	0.37	-1.6
4,495,455	-		HGI48_RS20110	0.37	+0.4
4,495,577	+				+0.9
4,495,577	+		HGI48_RS20110	0.53	-0.8
4,495,578	-		HGI48_RS20110	0.53	+0.0
4,495,600	+		HGI48_RS20110	0.56	+0.3
4,495,600	+		HGI48_RS20110	0.56	-0.5
4,495,600	+		HGI48_RS20110	0.56	+0.4
4,495,600	+		HGI48_RS20110	0.56	-1.9
4,495,600	+		HGI48_RS20110	0.56	-2.8
4,495,600	+		HGI48_RS20110	0.56	-0.2
4,495,601	-		HGI48_RS20110	0.56	-1.0
4,495,601	-		HGI48_RS20110	0.56	+0.1
4,495,601	-		HGI48_RS20110	0.56	-0.5
4,495,601	-		HGI48_RS20110	0.56	+0.5
4,495,601	-		HGI48_RS20110	0.56	-2.1
4,495,601	-		HGI48_RS20110	0.56	-0.9
4,495,601	-		HGI48_RS20110	0.56	-0.8
4,495,601	-		HGI48_RS20110	0.56	-1.2
4,495,603	+		HGI48_RS20110	0.56	-1.0
4,495,603	+		HGI48_RS20110	0.56	+0.6
4,495,604	-		HGI48_RS20110	0.56	-0.5
4,495,604	-		HGI48_RS20110	0.56	-0.1
4,495,609	+		HGI48_RS20110	0.57	-0.9
4,495,609	+		HGI48_RS20110	0.57	-0.6
4,495,609	+				-0.6
4,495,627	+		HGI48_RS20110	0.59	+1.1
4,495,628	-		HGI48_RS20110	0.59	-0.8
4,495,741	+		HGI48_RS20110	0.74	-1.6
4,495,741	+		HGI48_RS20110	0.74	-0.0
4,495,741	+		HGI48_RS20110	0.74	-0.7
4,495,742	-		HGI48_RS20110	0.74	-0.1
4,495,742	-		HGI48_RS20110	0.74	-0.4
4,495,822	+				+0.9
4,495,822	+		HGI48_RS20110	0.84	-0.6
4,495,823	-		HGI48_RS20110	0.84	-1.0
4,495,937	+				-1.6
4,495,937	+				+1.8
4,495,938	-				-0.2
4,495,985	+				+0.2
4,495,985	+				-0.6
4,496,015	+		HGI48_RS20115	0.11	+0.2
4,496,015	+				-0.6
4,496,015	+		HGI48_RS20115	0.11	-0.4
4,496,015	+		HGI48_RS20115	0.11	-0.6
4,496,015	+		HGI48_RS20115	0.11	-1.2
4,496,015	+		HGI48_RS20115	0.11	-0.4
4,496,015	+		HGI48_RS20115	0.11	-0.3
4,496,015	+		HGI48_RS20115	0.11	+0.3
4,496,016	-		HGI48_RS20115	0.11	-1.6
4,496,016	-		HGI48_RS20115	0.11	+1.3
4,496,069	+		HGI48_RS20115	0.21	-0.4
4,496,070	-		HGI48_RS20115	0.22	-1.2
4,496,070	-		HGI48_RS20115	0.22	-0.3
4,496,070	-				+1.5
4,496,078	+		HGI48_RS20115	0.23	-1.9