Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19705

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,396,751	+		HGI48_RS19695	0.26	-1.4
4,396,752	-		HGI48_RS19695	0.26	-1.1
4,396,752	-		HGI48_RS19695	0.26	+0.9
4,396,752	-		HGI48_RS19695	0.26	-1.0
4,396,834	+		HGI48_RS19695	0.41	-0.1
4,396,835	-		HGI48_RS19695	0.41	-0.3
4,397,017	+		HGI48_RS19695	0.74	-0.4
4,397,017	+		HGI48_RS19695	0.74	-0.5
4,397,018	-		HGI48_RS19695	0.75	+0.2
4,397,018	-		HGI48_RS19695	0.75	+0.0
4,397,098	+		HGI48_RS19695	0.89	-0.8
4,397,099	-		HGI48_RS19695	0.89	+0.7
4,397,195	-				-1.1
4,397,195	-				-1.9
4,397,222	+				+2.1
4,397,222	+		HGI48_RS19700	0.12	-0.8
4,397,222	+		HGI48_RS19700	0.12	-0.4
4,397,222	+		HGI48_RS19700	0.12	+0.7
4,397,254	-		HGI48_RS19700	0.17	-0.1
4,397,268	+		HGI48_RS19700	0.20	+3.8
4,397,268	+		HGI48_RS19700	0.20	-0.4
4,397,268	+		HGI48_RS19700	0.20	+0.0
4,397,268	+		HGI48_RS19700	0.20	-0.7
4,397,277	+		HGI48_RS19700	0.21	+1.7
4,397,593	+		HGI48_RS19700	0.78	+0.6
4,397,674	+				-1.4
4,397,676	+				-0.4
4,397,676	+				-0.9
4,397,676	+				+0.4
4,397,676	+				-1.9
4,397,676	+				-0.1
4,397,723	-				-0.5
4,397,854	-		HGI48_RS19705	0.15	+0.3
4,397,896	+		HGI48_RS19705	0.20	-0.6
4,397,897	-		HGI48_RS19705	0.20	+0.2
4,397,911	+		HGI48_RS19705	0.22	+0.5
4,397,912	-		HGI48_RS19705	0.22	-0.4
4,397,912	-		HGI48_RS19705	0.22	-0.1
4,397,919	+		HGI48_RS19705	0.23	+0.4
4,397,920	-		HGI48_RS19705	0.23	-0.6
4,397,920	-				-0.1
4,397,920	-		HGI48_RS19705	0.23	-1.7
4,397,920	-		HGI48_RS19705	0.23	+0.4
4,397,927	+		HGI48_RS19705	0.23	-0.5
4,397,927	+		HGI48_RS19705	0.23	+0.2
4,397,928	-		HGI48_RS19705	0.23	-0.5
4,397,971	+		HGI48_RS19705	0.28	-0.4
4,397,972	-		HGI48_RS19705	0.28	-1.4
4,397,984	-		HGI48_RS19705	0.30	-1.8
4,397,984	-		HGI48_RS19705	0.30	-0.4
4,398,009	+				-0.7
4,398,009	+		HGI48_RS19705	0.32	-0.3
4,398,010	-		HGI48_RS19705	0.32	+0.2
4,398,010	-		HGI48_RS19705	0.32	+0.4
4,398,010	-		HGI48_RS19705	0.32	-1.1
4,398,154	+		HGI48_RS19705	0.48	-0.7
4,398,154	+		HGI48_RS19705	0.48	+0.1
4,398,154	+		HGI48_RS19705	0.48	-2.1
4,398,155	-		HGI48_RS19705	0.48	-0.1
4,398,155	-		HGI48_RS19705	0.48	-0.9
4,398,155	-		HGI48_RS19705	0.48	-1.0
4,398,155	-				-0.7
4,398,155	-		HGI48_RS19705	0.48	-2.4
4,398,157	+		HGI48_RS19705	0.48	-0.1
4,398,158	-		HGI48_RS19705	0.48	+0.1
4,398,158	-		HGI48_RS19705	0.48	+0.8
4,398,248	-		HGI48_RS19705	0.58	-0.1
4,398,248	-		HGI48_RS19705	0.58	+0.0
4,398,332	-		HGI48_RS19705	0.67	-0.3
4,398,332	-		HGI48_RS19705	0.67	-0.2
4,398,333	+		HGI48_RS19705	0.67	+1.3
4,398,333	+		HGI48_RS19705	0.67	+0.9
4,398,334	-		HGI48_RS19705	0.67	-0.5
4,398,334	-		HGI48_RS19705	0.67	+1.1
4,398,334	-		HGI48_RS19705	0.67	+1.1
4,398,466	+		HGI48_RS19705	0.82	-1.1
4,398,467	-		HGI48_RS19705	0.82	-0.3
4,398,488	+		HGI48_RS19705	0.84	-1.0
4,398,488	+		HGI48_RS19705	0.84	+0.3
4,398,488	+		HGI48_RS19705	0.84	-0.6
4,398,488	+		HGI48_RS19705	0.84	+0.4
4,398,488	+		HGI48_RS19705	0.84	+0.4
4,398,489	-		HGI48_RS19705	0.84	+0.5
4,398,489	-		HGI48_RS19705	0.84	-2.1
4,398,489	-		HGI48_RS19705	0.84	+0.6
4,398,489	-		HGI48_RS19705	0.84	-0.7
4,398,489	-		HGI48_RS19705	0.84	+1.1
4,398,504	-		HGI48_RS19705	0.86	-1.7
4,398,569	+				-1.8
4,398,587	-				+0.9
4,398,587	-				-0.1
4,398,587	-				-1.1
4,398,661	+				+0.1
4,398,661	+				-0.7
4,398,680	-				+0.1
4,398,680	-				+0.3
4,398,681	+				-0.4
4,398,701	+				+0.1
4,398,701	+				-0.4
4,398,701	+				-1.1
4,398,702	-				-0.7
4,398,706	+				+0.4
4,398,706	+				-0.2
4,398,706	+				-0.2
4,398,707	-				+0.9
4,398,707	-				+0.9
4,398,747	+				-2.1
4,398,748	-				-1.4
4,398,752	+				+0.2
4,398,752	+				+1.2
4,398,752	+				+0.1
4,398,752	+				+0.2
4,398,752	+				-1.4
4,398,753	-				-1.1
4,398,753	-				-0.9
4,398,756	+				-0.3
4,398,756	+				-1.7
4,398,756	+				-0.6
4,398,757	-				-0.2
4,398,757	-				-0.7
4,398,757	-				+0.5
4,398,818	+				+0.5
4,398,819	-				-1.1
4,398,819	-				+1.5
4,398,887	+				-0.7
4,398,888	-				+0.5
4,398,888	-				+0.9
4,399,153	+		HGI48_RS19710	0.16	-1.0
4,399,154	-		HGI48_RS19710	0.16	+0.0
4,399,223	+		HGI48_RS19710	0.19	+0.1
4,399,224	-		HGI48_RS19710	0.19	-0.2
4,399,224	-				+0.3
4,399,238	+		HGI48_RS19710	0.20	+0.3
4,399,239	-				+0.9
4,399,239	-		HGI48_RS19710	0.20	-0.4
4,399,239	-		HGI48_RS19710	0.20	-0.9
4,399,283	+		HGI48_RS19710	0.21	-1.4
4,399,373	+				+0.9
4,399,373	+		HGI48_RS19710	0.25	-0.1
4,399,379	+		HGI48_RS19710	0.25	-0.7
4,399,436	+		HGI48_RS19710	0.27	+0.2
4,399,442	-		HGI48_RS19710	0.28	-0.5
4,399,442	-		HGI48_RS19710	0.28	-0.2
4,399,454	+		HGI48_RS19710	0.28	-1.0
4,399,455	-				+1.9
4,399,455	-		HGI48_RS19710	0.28	+1.2
4,399,577	+		HGI48_RS19710	0.33	+0.5
4,399,577	+		HGI48_RS19710	0.33	-2.5
4,399,577	+		HGI48_RS19710	0.33	-2.7
4,399,577	+		HGI48_RS19710	0.33	-1.4
4,399,577	+		HGI48_RS19710	0.33	-1.4
4,399,578	-		HGI48_RS19710	0.33	-0.4
4,399,578	-		HGI48_RS19710	0.33	-1.1
4,399,578	-		HGI48_RS19710	0.33	-0.4
4,399,578	-		HGI48_RS19710	0.33	-2.1
4,399,578	-		HGI48_RS19710	0.33	+0.6
4,399,598	+		HGI48_RS19710	0.34	-0.1