Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16075

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,612,043	+				+0.4
3,612,043	+				-0.1
3,612,074	+				+0.7
3,612,074	+				-0.1
3,612,075	-				+1.1
3,612,075	-				+0.1
3,612,075	-				-1.3
3,612,075	-				+0.7
3,612,075	-				-1.7
3,612,122	+				-0.3
3,612,122	+				-2.1
3,612,122	+				+0.3
3,612,123	-				-0.8
3,612,196	-				-2.7
3,612,222	+				-0.3
3,612,222	+				+0.7
3,612,242	-		HGI48_RS16070	0.15	-1.8
3,612,321	+		HGI48_RS16070	0.25	-0.6
3,612,338	-		HGI48_RS16070	0.27	+0.2
3,612,460	+		HGI48_RS16070	0.42	+0.1
3,612,460	+		HGI48_RS16070	0.42	-0.6
3,612,460	+		HGI48_RS16070	0.42	-0.1
3,612,461	-		HGI48_RS16070	0.43	+0.7
3,612,461	-				-0.9
3,612,461	-		HGI48_RS16070	0.43	-0.0
3,612,461	-		HGI48_RS16070	0.43	-1.9
3,612,461	-		HGI48_RS16070	0.43	-0.0
3,612,461	-		HGI48_RS16070	0.43	-0.1
3,612,461	-		HGI48_RS16070	0.43	+1.4
3,612,557	+		HGI48_RS16070	0.55	+0.7
3,612,558	-		HGI48_RS16070	0.55	-0.7
3,612,573	-		HGI48_RS16070	0.57	-1.7
3,612,573	-		HGI48_RS16070	0.57	-0.3
3,612,573	-		HGI48_RS16070	0.57	-1.3
3,612,653	-		HGI48_RS16070	0.67	-0.2
3,612,861	+				-1.7
3,612,861	+				+3.2
3,612,861	+				+1.1
3,612,861	+				-0.3
3,612,861	+				-2.2
3,612,861	+				+0.4
3,612,861	+				+1.3
3,612,862	-				-0.4
3,612,862	-				+0.1
3,612,862	-				-2.2
3,612,862	-				-0.1
3,612,862	-				+1.7
3,612,862	-				-2.1
3,612,862	-				+0.7
3,612,862	-				-1.9
3,612,862	-				-0.7
3,612,903	+				+0.7
3,612,904	-				-0.7
3,612,904	-				+1.1
3,612,904	-				-1.7
3,612,904	-				+0.1
3,612,915	+				+0.1
3,612,916	-				+0.1
3,613,009	+				-1.2
3,613,010	-				-0.3
3,613,010	-				-0.9
3,613,010	-				-0.3
3,613,094	+		HGI48_RS16075	0.19	-0.5
3,613,095	-				+0.7
3,613,095	-		HGI48_RS16075	0.19	-0.3
3,613,390	-				+0.7
3,613,434	+		HGI48_RS16075	0.59	+0.8
3,613,435	-		HGI48_RS16075	0.59	-2.5
3,613,550	+		HGI48_RS16075	0.72	+0.4
3,613,577	-		HGI48_RS16075	0.75	+0.2
3,613,604	+		HGI48_RS16075	0.78	+2.2
3,613,604	+		HGI48_RS16075	0.78	-1.7
3,613,604	+		HGI48_RS16075	0.78	+0.7
3,613,605	-		HGI48_RS16075	0.79	+1.7
3,613,605	-		HGI48_RS16075	0.79	-0.1
3,613,605	-		HGI48_RS16075	0.79	+1.0
3,613,605	-		HGI48_RS16075	0.79	+0.3
3,613,664	+		HGI48_RS16075	0.85	-0.3
3,613,664	+		HGI48_RS16075	0.85	-0.6
3,613,664	+				+1.2
3,613,777	+				-1.1
3,613,777	+				+2.2
3,613,778	-				-1.9
3,613,778	-				-0.1
3,613,836	+				+1.5
3,613,836	+				-0.7
3,613,837	-				-1.9
3,613,837	-				+0.7
3,613,872	-		HGI48_RS16080	0.15	-0.1
3,613,876	+		HGI48_RS16080	0.17	-1.3
3,613,876	+		HGI48_RS16080	0.17	+0.4
3,613,877	-		HGI48_RS16080	0.17	-0.2
3,613,908	+		HGI48_RS16080	0.25	-1.5
3,613,909	-		HGI48_RS16080	0.25	-2.3
3,613,909	-		HGI48_RS16080	0.25	-0.0
3,613,933	+		HGI48_RS16080	0.31	+0.2
3,613,951	+		HGI48_RS16080	0.36	-1.2
3,613,951	+		HGI48_RS16080	0.36	-0.7
3,613,951	+		HGI48_RS16080	0.36	+1.2
3,613,951	+		HGI48_RS16080	0.36	-0.9
3,613,952	-		HGI48_RS16080	0.36	+1.2
3,613,952	-		HGI48_RS16080	0.36	-1.0
3,613,952	-		HGI48_RS16080	0.36	+1.5
3,613,952	-				+2.7
3,613,952	-		HGI48_RS16080	0.36	-0.7
3,613,952	-				-0.9
3,613,985	-		HGI48_RS16080	0.45	-1.2
3,614,070	+		HGI48_RS16080	0.67	-1.2
3,614,071	-		HGI48_RS16080	0.68	-2.3
3,614,071	-		HGI48_RS16080	0.68	+0.5
3,614,080	+		HGI48_RS16080	0.70	+1.3
3,614,080	+		HGI48_RS16080	0.70	-0.1
3,614,080	+		HGI48_RS16080	0.70	-0.3
3,614,081	-		HGI48_RS16080	0.70	-0.2
3,614,081	-		HGI48_RS16080	0.70	-0.2
3,614,081	-		HGI48_RS16080	0.70	-2.3
3,614,081	-		HGI48_RS16080	0.70	+0.9
3,614,081	-		HGI48_RS16080	0.70	+0.2
3,614,081	-		HGI48_RS16080	0.70	+0.9
3,614,081	-		HGI48_RS16080	0.70	-0.9
3,614,081	-		HGI48_RS16080	0.70	+0.6
3,614,081	-				+0.7
3,614,081	-		HGI48_RS16080	0.70	+1.7
3,614,081	-		HGI48_RS16080	0.70	+0.7
3,614,081	-				-0.3
3,614,132	-		HGI48_RS16080	0.84	-0.3
3,614,148	+		HGI48_RS16080	0.88	+0.1
3,614,148	+		HGI48_RS16080	0.88	+0.7
3,614,148	+		HGI48_RS16080	0.88	+0.7
3,614,148	+		HGI48_RS16080	0.88	-1.5
3,614,148	+		HGI48_RS16080	0.88	+0.7
3,614,149	-				+1.4
3,614,149	-		HGI48_RS16080	0.88	-0.1
3,614,149	-				-0.3
3,614,149	-		HGI48_RS16080	0.88	-2.5
3,614,149	-		HGI48_RS16080	0.88	-0.5
3,614,149	-		HGI48_RS16080	0.88	-0.7
3,614,149	-		HGI48_RS16080	0.88	-0.7
3,614,311	+				-1.9
3,614,312	-				-0.9
3,614,324	+				-1.7
3,614,325	-				+0.8
3,614,400	-		HGI48_RS16085	0.18	+3.9
3,614,405	+				+1.6
3,614,405	+		HGI48_RS16085	0.19	+1.3
3,614,405	+				+1.1
3,614,406	-				+0.6
3,614,406	-		HGI48_RS16085	0.19	-1.7
3,614,406	-		HGI48_RS16085	0.19	-0.7
3,614,407	+		HGI48_RS16085	0.19	-0.1
3,614,407	+		HGI48_RS16085	0.19	-0.8
3,614,408	-		HGI48_RS16085	0.19	-0.1
3,614,408	-		HGI48_RS16085	0.19	-1.4
3,614,408	-		HGI48_RS16085	0.19	-0.7
3,614,408	-		HGI48_RS16085	0.19	-0.7
3,614,408	-		HGI48_RS16085	0.19	-0.6
3,614,408	-		HGI48_RS16085	0.19	-0.5
3,614,408	-		HGI48_RS16085	0.19	+0.4
3,614,467	+		HGI48_RS16085	0.27	+0.9
3,614,468	-				-0.4
3,614,485	+		HGI48_RS16085	0.29	-1.7
3,614,485	+		HGI48_RS16085	0.29	+0.1
3,614,485	+		HGI48_RS16085	0.29	+0.6
3,614,485	+		HGI48_RS16085	0.29	+0.6
3,614,547	+		HGI48_RS16085	0.37	-0.2
3,614,681	+		HGI48_RS16085	0.54	-0.9
3,614,720	+		HGI48_RS16085	0.59	-0.0
3,614,720	+		HGI48_RS16085	0.59	-1.7
3,614,721	-		HGI48_RS16085	0.60	-0.7
3,614,721	-		HGI48_RS16085	0.60	-0.7
3,614,721	-		HGI48_RS16085	0.60	-1.4
3,614,721	-		HGI48_RS16085	0.60	-1.2