Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08570

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS08555 and HGI48_RS08560 are separated by 101 nucleotidesHGI48_RS08560 and HGI48_RS08565 are separated by 71 nucleotidesHGI48_RS08565 and HGI48_RS08570 are separated by 9 nucleotidesHGI48_RS08570 and HGI48_RS08575 are separated by 11 nucleotidesHGI48_RS08575 and HGI48_RS08580 are separated by 14 nucleotides HGI48_RS08555: HGI48_RS08555 - helix-turn-helix domain-containing protein, at 1,838,495 to 1,838,740 _RS08555 HGI48_RS08560: HGI48_RS08560 - hypothetical protein, at 1,838,842 to 1,838,985 _RS08560 HGI48_RS08565: HGI48_RS08565 - immunity protein RhsIA, at 1,839,057 to 1,839,464 _RS08565 HGI48_RS08570: HGI48_RS08570 - PAAR domain-containing protein, at 1,839,474 to 1,843,823 _RS08570 HGI48_RS08575: HGI48_RS08575 - DUF1795 domain-containing protein, at 1,843,835 to 1,844,242 _RS08575 HGI48_RS08580: HGI48_RS08580 - type VI secretion system tip protein VgrG, at 1,844,257 to 1,846,110 _RS08580 Position (kb) 1839 1840 1841 1842 1843 1844Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1838.494 kb on + strandat 1838.494 kb on + strandat 1838.495 kb on - strandat 1838.597 kb on - strand, within HGI48_RS08555at 1838.597 kb on - strandat 1838.608 kb on + strand, within HGI48_RS08555at 1838.609 kb on - strand, within HGI48_RS08555at 1838.781 kb on - strandat 1838.781 kb on - strandat 1838.956 kb on - strand, within HGI48_RS08560at 1838.984 kb on - strandat 1839.014 kb on - strandat 1839.637 kb on + strandat 1839.654 kb on - strandat 1839.714 kb on + strandat 1839.714 kb on + strandat 1839.714 kb on + strandat 1839.715 kb on - strandat 1839.715 kb on - strandat 1839.741 kb on - strandat 1839.744 kb on + strandat 1839.794 kb on + strandat 1839.794 kb on + strandat 1839.913 kb on + strand, within HGI48_RS08570at 1839.913 kb on + strandat 1839.919 kb on + strand, within HGI48_RS08570at 1839.920 kb on - strand, within HGI48_RS08570at 1839.920 kb on - strand, within HGI48_RS08570at 1839.920 kb on - strand, within HGI48_RS08570at 1839.923 kb on + strand, within HGI48_RS08570at 1839.923 kb on + strand, within HGI48_RS08570at 1839.923 kb on + strand, within HGI48_RS08570at 1839.923 kb on + strand, within HGI48_RS08570at 1839.924 kb on - strand, within HGI48_RS08570at 1839.924 kb on - strand, within HGI48_RS08570at 1839.924 kb on - strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.964 kb on + strand, within HGI48_RS08570at 1839.965 kb on - strandat 1839.965 kb on - strandat 1839.965 kb on - strand, within HGI48_RS08570at 1839.965 kb on - strand, within HGI48_RS08570at 1839.965 kb on - strand, within HGI48_RS08570at 1839.985 kb on + strand, within HGI48_RS08570at 1839.986 kb on - strand, within HGI48_RS08570at 1839.986 kb on - strandat 1840.004 kb on - strand, within HGI48_RS08570at 1840.004 kb on - strand, within HGI48_RS08570at 1840.004 kb on - strand, within HGI48_RS08570at 1840.004 kb on - strand, within HGI48_RS08570at 1840.004 kb on - strand, within HGI48_RS08570at 1840.519 kb on + strand, within HGI48_RS08570at 1841.179 kb on + strand, within HGI48_RS08570at 1841.179 kb on + strand, within HGI48_RS08570at 1841.179 kb on + strandat 1841.179 kb on + strand, within HGI48_RS08570at 1841.179 kb on + strand, within HGI48_RS08570at 1841.180 kb on - strand, within HGI48_RS08570at 1841.185 kb on + strand, within HGI48_RS08570at 1841.185 kb on + strand, within HGI48_RS08570at 1841.882 kb on - strandat 1841.882 kb on - strand, within HGI48_RS08570at 1841.882 kb on - strand, within HGI48_RS08570at 1841.882 kb on - strandat 1841.945 kb on - strand, within HGI48_RS08570at 1841.951 kb on - strand, within HGI48_RS08570at 1842.074 kb on - strand, within HGI48_RS08570at 1842.074 kb on - strandat 1842.193 kb on + strandat 1842.235 kb on + strand, within HGI48_RS08570at 1842.235 kb on + strandat 1842.235 kb on + strand, within HGI48_RS08570at 1842.235 kb on + strandat 1842.236 kb on - strand, within HGI48_RS08570at 1842.236 kb on - strand, within HGI48_RS08570at 1842.323 kb on - strand, within HGI48_RS08570at 1842.329 kb on - strand, within HGI48_RS08570at 1842.331 kb on + strand, within HGI48_RS08570at 1842.331 kb on + strand, within HGI48_RS08570at 1842.332 kb on - strand, within HGI48_RS08570at 1842.341 kb on - strand, within HGI48_RS08570at 1842.432 kb on + strand, within HGI48_RS08570at 1842.433 kb on - strand, within HGI48_RS08570at 1842.433 kb on - strand, within HGI48_RS08570at 1842.433 kb on - strand, within HGI48_RS08570at 1842.445 kb on + strand, within HGI48_RS08570at 1842.847 kb on + strand, within HGI48_RS08570at 1842.927 kb on - strand, within HGI48_RS08570at 1842.927 kb on - strand, within HGI48_RS08570at 1842.928 kb on + strand, within HGI48_RS08570at 1842.929 kb on - strand, within HGI48_RS08570at 1842.929 kb on - strand, within HGI48_RS08570at 1842.929 kb on - strand, within HGI48_RS08570at 1842.929 kb on - strand, within HGI48_RS08570at 1843.201 kb on + strand, within HGI48_RS08570at 1843.202 kb on - strand, within HGI48_RS08570at 1843.367 kb on + strand, within HGI48_RS08570at 1843.491 kb on + strandat 1843.491 kb on + strandat 1843.492 kb on - strandat 1843.539 kb on + strandat 1843.671 kb on - strandat 1843.680 kb on - strandat 1843.944 kb on - strand, within HGI48_RS08575at 1843.995 kb on + strand, within HGI48_RS08575at 1843.995 kb on + strand, within HGI48_RS08575at 1844.097 kb on + strand, within HGI48_RS08575at 1844.097 kb on + strand, within HGI48_RS08575at 1844.097 kb on + strand, within HGI48_RS08575at 1844.097 kb on + strand, within HGI48_RS08575at 1844.098 kb on - strand, within HGI48_RS08575at 1844.098 kb on - strand, within HGI48_RS08575at 1844.238 kb on + strandat 1844.238 kb on + strandat 1844.238 kb on + strandat 1844.238 kb on + strandat 1844.764 kb on - strand, within HGI48_RS08580

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,838,494 + -0.4
1,838,494 + +0.0
1,838,495 - -1.6
1,838,597 - HGI48_RS08555 0.41 -1.0
1,838,597 - +1.4
1,838,608 + HGI48_RS08555 0.46 +1.0
1,838,609 - HGI48_RS08555 0.46 +1.0
1,838,781 - +0.7
1,838,781 - +0.8
1,838,956 - HGI48_RS08560 0.79 -1.6
1,838,984 - -2.8
1,839,014 - -1.3
1,839,637 + +0.1
1,839,654 - -0.8
1,839,714 + -2.0
1,839,714 + -1.6
1,839,714 + -3.8
1,839,715 - -0.7
1,839,715 - -1.4
1,839,741 - -1.0
1,839,744 + -3.6
1,839,794 + -2.2
1,839,794 + -1.2
1,839,913 + HGI48_RS08570 0.10 -2.0
1,839,913 + -0.6
1,839,919 + HGI48_RS08570 0.10 -3.7
1,839,920 - HGI48_RS08570 0.10 -0.5
1,839,920 - HGI48_RS08570 0.10 -1.6
1,839,920 - HGI48_RS08570 0.10 +0.4
1,839,923 + HGI48_RS08570 0.10 -2.0
1,839,923 + HGI48_RS08570 0.10 -2.2
1,839,923 + HGI48_RS08570 0.10 -2.4
1,839,923 + HGI48_RS08570 0.10 -5.1
1,839,924 - HGI48_RS08570 0.10 -0.2
1,839,924 - HGI48_RS08570 0.10 -2.8
1,839,924 - HGI48_RS08570 0.10 +0.4
1,839,964 + HGI48_RS08570 0.11 -2.0
1,839,964 + HGI48_RS08570 0.11 -1.4
1,839,964 + HGI48_RS08570 0.11 -3.0
1,839,964 + HGI48_RS08570 0.11 -3.4
1,839,964 + HGI48_RS08570 0.11 -3.1
1,839,964 + HGI48_RS08570 0.11 -0.9
1,839,964 + HGI48_RS08570 0.11 -1.2
1,839,964 + HGI48_RS08570 0.11 -0.6
1,839,964 + HGI48_RS08570 0.11 -3.4
1,839,965 - +0.4
1,839,965 - -1.2
1,839,965 - HGI48_RS08570 0.11 +0.0
1,839,965 - HGI48_RS08570 0.11 -0.5
1,839,965 - HGI48_RS08570 0.11 -1.3
1,839,985 + HGI48_RS08570 0.12 -0.6
1,839,986 - HGI48_RS08570 0.12 -2.0
1,839,986 - +1.0
1,840,004 - HGI48_RS08570 0.12 -0.8
1,840,004 - HGI48_RS08570 0.12 -2.8
1,840,004 - HGI48_RS08570 0.12 +0.1
1,840,004 - HGI48_RS08570 0.12 -0.3
1,840,004 - HGI48_RS08570 0.12 +0.0
1,840,519 + HGI48_RS08570 0.24 -0.4
1,841,179 + HGI48_RS08570 0.39 -0.3
1,841,179 + HGI48_RS08570 0.39 -0.6
1,841,179 + -1.2
1,841,179 + HGI48_RS08570 0.39 +0.2
1,841,179 + HGI48_RS08570 0.39 -0.2
1,841,180 - HGI48_RS08570 0.39 +0.1
1,841,185 + HGI48_RS08570 0.39 -0.9
1,841,185 + HGI48_RS08570 0.39 -0.8
1,841,882 - -0.6
1,841,882 - HGI48_RS08570 0.55 -2.6
1,841,882 - HGI48_RS08570 0.55 -0.9
1,841,882 - +1.1
1,841,945 - HGI48_RS08570 0.57 -0.6
1,841,951 - HGI48_RS08570 0.57 -2.0
1,842,074 - HGI48_RS08570 0.60 -1.9
1,842,074 - +0.8
1,842,193 + +2.4
1,842,235 + HGI48_RS08570 0.63 +0.0
1,842,235 + -1.2
1,842,235 + HGI48_RS08570 0.63 +1.7
1,842,235 + -1.2
1,842,236 - HGI48_RS08570 0.63 -0.0
1,842,236 - HGI48_RS08570 0.63 -0.0
1,842,323 - HGI48_RS08570 0.65 +0.4
1,842,329 - HGI48_RS08570 0.66 +0.2
1,842,331 + HGI48_RS08570 0.66 +0.0
1,842,331 + HGI48_RS08570 0.66 +0.4
1,842,332 - HGI48_RS08570 0.66 +0.5
1,842,341 - HGI48_RS08570 0.66 -0.7
1,842,432 + HGI48_RS08570 0.68 -0.4
1,842,433 - HGI48_RS08570 0.68 +0.1
1,842,433 - HGI48_RS08570 0.68 -2.2
1,842,433 - HGI48_RS08570 0.68 +1.4
1,842,445 + HGI48_RS08570 0.68 -0.6
1,842,847 + HGI48_RS08570 0.78 +0.2
1,842,927 - HGI48_RS08570 0.79 -0.9
1,842,927 - HGI48_RS08570 0.79 -0.3
1,842,928 + HGI48_RS08570 0.79 +0.1
1,842,929 - HGI48_RS08570 0.79 -0.8
1,842,929 - HGI48_RS08570 0.79 +0.0
1,842,929 - HGI48_RS08570 0.79 +0.1
1,842,929 - HGI48_RS08570 0.79 -0.2
1,843,201 + HGI48_RS08570 0.86 -0.9
1,843,202 - HGI48_RS08570 0.86 -1.9
1,843,367 + HGI48_RS08570 0.89 -0.0
1,843,491 + -1.4
1,843,491 + +0.2
1,843,492 - -1.1
1,843,539 + -0.9
1,843,671 - +1.0
1,843,680 - +0.6
1,843,944 - HGI48_RS08575 0.27 -0.8
1,843,995 + HGI48_RS08575 0.39 -0.6
1,843,995 + HGI48_RS08575 0.39 -1.4
1,844,097 + HGI48_RS08575 0.64 +0.4
1,844,097 + HGI48_RS08575 0.64 +0.7
1,844,097 + HGI48_RS08575 0.64 +0.1
1,844,097 + HGI48_RS08575 0.64 +1.4
1,844,098 - HGI48_RS08575 0.64 +0.1
1,844,098 - HGI48_RS08575 0.64 -2.4
1,844,238 + +0.1
1,844,238 + -0.6
1,844,238 + -0.1
1,844,238 + -0.3
1,844,764 - HGI48_RS08580 0.27 +0.4

Or see this region's nucleotide sequence