Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07155

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS07150 and HGI48_RS07155 are separated by 191 nucleotidesHGI48_RS07155 and HGI48_RS07160 overlap by 11 nucleotidesHGI48_RS07160 and HGI48_RS07165 are separated by 16 nucleotides HGI48_RS07150: HGI48_RS07150 - AAA family ATPase, at 1,516,795 to 1,518,621 _RS07150 HGI48_RS07155: HGI48_RS07155 - TraR/DksA family transcriptional regulator, at 1,518,813 to 1,519,022 _RS07155 HGI48_RS07160: HGI48_RS07160 - DUF2857 domain-containing protein, at 1,519,012 to 1,519,596 _RS07160 HGI48_RS07165: HGI48_RS07165 - AlpA family phage regulatory protein, at 1,519,613 to 1,519,807 _RS07165 Position (kb) 1518 1519 1520Strain fitness (log2 ratio) -2 -1 0 1 2at 1517.832 kb on - strand, within HGI48_RS07150at 1518.087 kb on - strand, within HGI48_RS07150at 1518.119 kb on - strand, within HGI48_RS07150at 1518.142 kb on - strand, within HGI48_RS07150at 1518.401 kb on - strand, within HGI48_RS07150at 1518.523 kb on - strandat 1518.679 kb on - strandat 1518.711 kb on + strandat 1518.745 kb on - strandat 1518.760 kb on + strandat 1518.760 kb on + strandat 1518.764 kb on - strandat 1518.798 kb on + strandat 1518.798 kb on + strandat 1518.799 kb on - strandat 1518.809 kb on - strandat 1518.809 kb on - strandat 1518.809 kb on - strandat 1518.811 kb on + strandat 1518.811 kb on + strandat 1518.812 kb on - strandat 1518.837 kb on - strand, within HGI48_RS07155at 1518.851 kb on + strand, within HGI48_RS07155at 1518.851 kb on + strand, within HGI48_RS07155at 1518.919 kb on + strand, within HGI48_RS07155at 1518.919 kb on + strand, within HGI48_RS07155at 1518.924 kb on + strandat 1518.924 kb on + strand, within HGI48_RS07155at 1518.925 kb on - strand, within HGI48_RS07155at 1518.925 kb on - strand, within HGI48_RS07155at 1518.925 kb on - strandat 1518.925 kb on - strand, within HGI48_RS07155at 1518.925 kb on - strandat 1518.947 kb on + strand, within HGI48_RS07155at 1518.990 kb on - strand, within HGI48_RS07155at 1519.065 kb on + strandat 1519.291 kb on - strandat 1519.291 kb on - strand, within HGI48_RS07160at 1519.399 kb on + strand, within HGI48_RS07160at 1519.428 kb on + strand, within HGI48_RS07160at 1519.493 kb on - strand, within HGI48_RS07160at 1519.536 kb on + strand, within HGI48_RS07160at 1519.596 kb on + strandat 1519.597 kb on - strandat 1519.634 kb on + strand, within HGI48_RS07165at 1519.645 kb on + strand, within HGI48_RS07165at 1519.731 kb on + strand, within HGI48_RS07165at 1519.731 kb on + strand, within HGI48_RS07165at 1519.732 kb on - strand, within HGI48_RS07165at 1519.732 kb on - strand, within HGI48_RS07165at 1519.732 kb on - strand, within HGI48_RS07165at 1519.732 kb on - strand, within HGI48_RS07165at 1519.732 kb on - strand, within HGI48_RS07165at 1519.732 kb on - strand, within HGI48_RS07165at 1519.808 kb on - strandat 1519.808 kb on - strandat 1519.912 kb on - strandat 1519.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,517,832 - HGI48_RS07150 0.57 -0.9
1,518,087 - HGI48_RS07150 0.71 -0.1
1,518,119 - HGI48_RS07150 0.72 -1.8
1,518,142 - HGI48_RS07150 0.74 -0.3
1,518,401 - HGI48_RS07150 0.88 -0.5
1,518,523 - -2.1
1,518,679 - +1.2
1,518,711 + +0.5
1,518,745 - -1.4
1,518,760 + +0.1
1,518,760 + -1.8
1,518,764 - -0.8
1,518,798 + -0.2
1,518,798 + -0.7
1,518,799 - +2.1
1,518,809 - +0.2
1,518,809 - -0.0
1,518,809 - -2.1
1,518,811 + -0.4
1,518,811 + -0.3
1,518,812 - -1.1
1,518,837 - HGI48_RS07155 0.11 -0.5
1,518,851 + HGI48_RS07155 0.18 +0.2
1,518,851 + HGI48_RS07155 0.18 -0.4
1,518,919 + HGI48_RS07155 0.50 +0.5
1,518,919 + HGI48_RS07155 0.50 +0.3
1,518,924 + +0.5
1,518,924 + HGI48_RS07155 0.53 -0.0
1,518,925 - HGI48_RS07155 0.53 -0.8
1,518,925 - HGI48_RS07155 0.53 +0.3
1,518,925 - +1.2
1,518,925 - HGI48_RS07155 0.53 -1.8
1,518,925 - +0.5
1,518,947 + HGI48_RS07155 0.64 -0.7
1,518,990 - HGI48_RS07155 0.84 -0.5
1,519,065 + +0.5
1,519,291 - -0.1
1,519,291 - HGI48_RS07160 0.48 +1.6
1,519,399 + HGI48_RS07160 0.66 -1.8
1,519,428 + HGI48_RS07160 0.71 -1.5
1,519,493 - HGI48_RS07160 0.82 +0.5
1,519,536 + HGI48_RS07160 0.90 -1.8
1,519,596 + +0.2
1,519,597 - +0.8
1,519,634 + HGI48_RS07165 0.11 +0.8
1,519,645 + HGI48_RS07165 0.16 -1.4
1,519,731 + HGI48_RS07165 0.61 -0.9
1,519,731 + HGI48_RS07165 0.61 +0.2
1,519,732 - HGI48_RS07165 0.61 -0.5
1,519,732 - HGI48_RS07165 0.61 -0.6
1,519,732 - HGI48_RS07165 0.61 -0.3
1,519,732 - HGI48_RS07165 0.61 +0.2
1,519,732 - HGI48_RS07165 0.61 -2.0
1,519,732 - HGI48_RS07165 0.61 -2.0
1,519,808 - -0.8
1,519,808 - -0.1
1,519,912 - -0.5
1,519,965 - -0.4

Or see this region's nucleotide sequence