Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06265

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06255 and HGI48_RS06260 overlap by 1 nucleotidesHGI48_RS06260 and HGI48_RS06265 are separated by 4 nucleotidesHGI48_RS06265 and HGI48_RS06270 are separated by 163 nucleotides HGI48_RS06255: HGI48_RS06255 - amino acid ABC transporter ATP-binding protein, at 1,328,891 to 1,329,616 _RS06255 HGI48_RS06260: HGI48_RS06260 - glutamate/aspartate ABC transporter permease GltK, at 1,329,616 to 1,330,290 _RS06260 HGI48_RS06265: HGI48_RS06265 - amino acid ABC transporter permease, at 1,330,295 to 1,331,035 _RS06265 HGI48_RS06270: HGI48_RS06270 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,331,199 to 1,332,122 _RS06270 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1329.302 kb on + strand, within HGI48_RS06255at 1329.337 kb on + strand, within HGI48_RS06255at 1329.488 kb on + strand, within HGI48_RS06255at 1329.638 kb on + strandat 1329.639 kb on - strandat 1329.669 kb on + strandat 1329.706 kb on + strand, within HGI48_RS06260at 1329.774 kb on - strand, within HGI48_RS06260at 1329.774 kb on - strand, within HGI48_RS06260at 1329.774 kb on - strand, within HGI48_RS06260at 1329.774 kb on - strand, within HGI48_RS06260at 1329.774 kb on - strand, within HGI48_RS06260at 1329.774 kb on - strand, within HGI48_RS06260at 1329.787 kb on - strand, within HGI48_RS06260at 1329.804 kb on + strand, within HGI48_RS06260at 1329.924 kb on + strand, within HGI48_RS06260at 1329.924 kb on + strand, within HGI48_RS06260at 1329.924 kb on + strand, within HGI48_RS06260at 1329.925 kb on - strand, within HGI48_RS06260at 1329.925 kb on - strandat 1329.959 kb on + strand, within HGI48_RS06260at 1329.985 kb on + strand, within HGI48_RS06260at 1329.985 kb on + strand, within HGI48_RS06260at 1329.990 kb on + strand, within HGI48_RS06260at 1329.991 kb on - strand, within HGI48_RS06260at 1329.991 kb on - strand, within HGI48_RS06260at 1330.042 kb on + strand, within HGI48_RS06260at 1330.064 kb on + strand, within HGI48_RS06260at 1330.064 kb on + strand, within HGI48_RS06260at 1330.064 kb on + strand, within HGI48_RS06260at 1330.064 kb on + strand, within HGI48_RS06260at 1330.064 kb on + strand, within HGI48_RS06260at 1330.064 kb on + strand, within HGI48_RS06260at 1330.065 kb on - strand, within HGI48_RS06260at 1330.065 kb on - strand, within HGI48_RS06260at 1330.065 kb on - strand, within HGI48_RS06260at 1330.115 kb on + strandat 1330.115 kb on + strand, within HGI48_RS06260at 1330.247 kb on + strandat 1330.247 kb on + strandat 1330.247 kb on + strandat 1330.286 kb on + strandat 1330.286 kb on + strandat 1330.286 kb on + strandat 1330.287 kb on - strandat 1330.287 kb on - strandat 1330.292 kb on + strandat 1330.292 kb on + strandat 1330.292 kb on + strandat 1330.293 kb on - strandat 1330.296 kb on + strandat 1330.296 kb on + strandat 1330.297 kb on - strandat 1330.297 kb on - strandat 1330.297 kb on - strandat 1330.297 kb on - strandat 1330.297 kb on - strandat 1330.330 kb on + strandat 1330.380 kb on + strand, within HGI48_RS06265at 1330.380 kb on + strand, within HGI48_RS06265at 1330.380 kb on + strand, within HGI48_RS06265at 1330.380 kb on + strand, within HGI48_RS06265at 1330.380 kb on + strand, within HGI48_RS06265at 1330.381 kb on - strand, within HGI48_RS06265at 1330.381 kb on - strand, within HGI48_RS06265at 1330.411 kb on - strand, within HGI48_RS06265at 1330.425 kb on + strand, within HGI48_RS06265at 1330.426 kb on - strand, within HGI48_RS06265at 1330.426 kb on - strand, within HGI48_RS06265at 1330.426 kb on - strandat 1330.472 kb on - strandat 1330.563 kb on + strand, within HGI48_RS06265at 1330.569 kb on + strand, within HGI48_RS06265at 1330.569 kb on + strand, within HGI48_RS06265at 1330.569 kb on + strand, within HGI48_RS06265at 1330.569 kb on + strand, within HGI48_RS06265at 1330.570 kb on - strandat 1330.570 kb on - strand, within HGI48_RS06265at 1330.637 kb on - strand, within HGI48_RS06265at 1330.764 kb on - strand, within HGI48_RS06265at 1330.782 kb on + strand, within HGI48_RS06265at 1330.833 kb on + strand, within HGI48_RS06265at 1330.834 kb on - strand, within HGI48_RS06265at 1330.938 kb on - strand, within HGI48_RS06265at 1330.938 kb on - strandat 1330.961 kb on - strand, within HGI48_RS06265at 1330.974 kb on + strandat 1330.974 kb on + strandat 1330.974 kb on + strandat 1330.975 kb on - strandat 1330.981 kb on + strandat 1330.982 kb on - strandat 1331.027 kb on + strandat 1331.027 kb on + strandat 1331.027 kb on + strandat 1331.028 kb on - strandat 1331.028 kb on - strandat 1331.035 kb on + strandat 1331.035 kb on + strandat 1331.170 kb on - strandat 1331.170 kb on - strandat 1331.170 kb on - strandat 1331.170 kb on - strandat 1331.180 kb on - strandat 1331.180 kb on - strandat 1331.189 kb on - strandat 1331.191 kb on + strandat 1331.192 kb on - strandat 1331.192 kb on - strandat 1331.192 kb on - strandat 1331.257 kb on + strandat 1331.257 kb on + strandat 1331.257 kb on + strandat 1331.257 kb on + strandat 1331.257 kb on + strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.258 kb on - strandat 1331.295 kb on - strandat 1331.308 kb on + strand, within HGI48_RS06270at 1331.337 kb on + strand, within HGI48_RS06270at 1331.338 kb on - strand, within HGI48_RS06270at 1331.388 kb on - strand, within HGI48_RS06270at 1331.404 kb on + strand, within HGI48_RS06270at 1331.405 kb on - strand, within HGI48_RS06270at 1331.630 kb on + strand, within HGI48_RS06270at 1331.900 kb on - strand, within HGI48_RS06270at 1331.912 kb on - strand, within HGI48_RS06270at 1331.917 kb on - strand, within HGI48_RS06270at 1331.938 kb on + strand, within HGI48_RS06270

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,329,302 + HGI48_RS06255 0.57 +0.2
1,329,337 + HGI48_RS06255 0.61 +0.2
1,329,488 + HGI48_RS06255 0.82 -0.4
1,329,638 + +0.2
1,329,639 - -0.5
1,329,669 + +0.2
1,329,706 + HGI48_RS06260 0.13 -0.4
1,329,774 - HGI48_RS06260 0.23 +0.7
1,329,774 - HGI48_RS06260 0.23 +0.6
1,329,774 - HGI48_RS06260 0.23 -2.2
1,329,774 - HGI48_RS06260 0.23 -1.1
1,329,774 - HGI48_RS06260 0.23 -1.0
1,329,774 - HGI48_RS06260 0.23 +1.3
1,329,787 - HGI48_RS06260 0.25 -0.1
1,329,804 + HGI48_RS06260 0.28 -0.0
1,329,924 + HGI48_RS06260 0.46 -0.4
1,329,924 + HGI48_RS06260 0.46 +0.6
1,329,924 + HGI48_RS06260 0.46 -0.2
1,329,925 - HGI48_RS06260 0.46 -0.8
1,329,925 - +0.0
1,329,959 + HGI48_RS06260 0.51 -1.4
1,329,985 + HGI48_RS06260 0.55 -1.0
1,329,985 + HGI48_RS06260 0.55 +0.9
1,329,990 + HGI48_RS06260 0.55 +0.5
1,329,991 - HGI48_RS06260 0.56 +0.5
1,329,991 - HGI48_RS06260 0.56 +1.1
1,330,042 + HGI48_RS06260 0.63 -0.9
1,330,064 + HGI48_RS06260 0.66 -2.5
1,330,064 + HGI48_RS06260 0.66 -0.7
1,330,064 + HGI48_RS06260 0.66 +0.0
1,330,064 + HGI48_RS06260 0.66 -0.8
1,330,064 + HGI48_RS06260 0.66 -0.6
1,330,064 + HGI48_RS06260 0.66 +1.2
1,330,065 - HGI48_RS06260 0.67 -2.2
1,330,065 - HGI48_RS06260 0.67 -0.3
1,330,065 - HGI48_RS06260 0.67 -0.0
1,330,115 + +1.4
1,330,115 + HGI48_RS06260 0.74 +0.3
1,330,247 + +1.0
1,330,247 + +0.3
1,330,247 + +0.6
1,330,286 + +0.4
1,330,286 + -1.4
1,330,286 + -1.0
1,330,287 - -0.1
1,330,287 - -0.8
1,330,292 + -1.2
1,330,292 + -0.3
1,330,292 + +1.0
1,330,293 - -0.2
1,330,296 + -0.2
1,330,296 + -0.2
1,330,297 - +5.7
1,330,297 - -0.4
1,330,297 - -0.9
1,330,297 - +1.0
1,330,297 - +0.0
1,330,330 + -0.4
1,330,380 + HGI48_RS06265 0.11 -0.4
1,330,380 + HGI48_RS06265 0.11 -0.0
1,330,380 + HGI48_RS06265 0.11 -2.4
1,330,380 + HGI48_RS06265 0.11 +1.2
1,330,380 + HGI48_RS06265 0.11 -0.7
1,330,381 - HGI48_RS06265 0.12 -2.2
1,330,381 - HGI48_RS06265 0.12 +0.2
1,330,411 - HGI48_RS06265 0.16 -1.4
1,330,425 + HGI48_RS06265 0.18 +0.6
1,330,426 - HGI48_RS06265 0.18 -0.1
1,330,426 - HGI48_RS06265 0.18 +0.0
1,330,426 - +0.0
1,330,472 - -0.4
1,330,563 + HGI48_RS06265 0.36 +0.5
1,330,569 + HGI48_RS06265 0.37 +0.0
1,330,569 + HGI48_RS06265 0.37 +1.0
1,330,569 + HGI48_RS06265 0.37 -0.4
1,330,569 + HGI48_RS06265 0.37 -0.4
1,330,570 - +0.0
1,330,570 - HGI48_RS06265 0.37 -0.6
1,330,637 - HGI48_RS06265 0.46 -0.8
1,330,764 - HGI48_RS06265 0.63 +0.6
1,330,782 + HGI48_RS06265 0.66 -2.0
1,330,833 + HGI48_RS06265 0.73 -0.8
1,330,834 - HGI48_RS06265 0.73 -0.4
1,330,938 - HGI48_RS06265 0.87 -0.4
1,330,938 - +0.6
1,330,961 - HGI48_RS06265 0.90 -2.5
1,330,974 + -0.2
1,330,974 + +1.2
1,330,974 + -0.0
1,330,975 - -0.6
1,330,981 + +1.6
1,330,982 - -1.4
1,331,027 + +2.1
1,331,027 + -1.4
1,331,027 + +0.6
1,331,028 - -0.1
1,331,028 - -1.0
1,331,035 + -2.0
1,331,035 + -2.2
1,331,170 - +0.6
1,331,170 - +1.6
1,331,170 - -1.0
1,331,170 - -0.4
1,331,180 - +0.4
1,331,180 - -0.2
1,331,189 - +0.5
1,331,191 + +3.2
1,331,192 - +0.0
1,331,192 - -2.0
1,331,192 - -0.1
1,331,257 + -0.4
1,331,257 + -0.4
1,331,257 + +0.8
1,331,257 + +0.5
1,331,257 + +1.0
1,331,258 - -0.1
1,331,258 - +1.1
1,331,258 - +0.2
1,331,258 - -0.1
1,331,258 - +0.1
1,331,258 - -0.4
1,331,258 - +0.6
1,331,258 - -0.1
1,331,258 - -0.6
1,331,258 - -0.4
1,331,295 - +1.6
1,331,308 + HGI48_RS06270 0.12 +0.3
1,331,337 + HGI48_RS06270 0.15 -0.8
1,331,338 - HGI48_RS06270 0.15 -1.4
1,331,388 - HGI48_RS06270 0.20 -1.7
1,331,404 + HGI48_RS06270 0.22 -0.7
1,331,405 - HGI48_RS06270 0.22 +0.4
1,331,630 + HGI48_RS06270 0.47 -0.3
1,331,900 - HGI48_RS06270 0.76 -0.2
1,331,912 - HGI48_RS06270 0.77 -1.8
1,331,917 - HGI48_RS06270 0.78 +0.6
1,331,938 + HGI48_RS06270 0.80 -0.7

Or see this region's nucleotide sequence