Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05790

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,217,548	-				-0.6
1,217,548	-				+0.1
1,217,565	-				+0.1
1,217,570	+				+0.0
1,217,647	+				-1.1
1,217,648	-				-0.7
1,217,734	+				-0.1
1,217,734	+				+1.7
1,217,734	+				+1.9
1,217,735	-				+0.7
1,217,735	-				+1.0
1,217,736	+				-0.1
1,217,736	+				+1.1
1,217,736	+				+0.7
1,217,736	+				+1.1
1,217,738	+				-0.3
1,217,738	+				+0.7
1,217,738	+				-2.1
1,217,738	+				-1.9
1,217,738	+				-0.7
1,217,739	-				-0.9
1,217,743	-				+1.1
1,217,743	-				+1.0
1,217,761	+				-1.2
1,217,761	+				-0.1
1,217,761	+				+0.7
1,217,763	+				+0.1
1,217,764	-				+0.1
1,217,764	-				+1.4
1,217,802	-				+0.3
1,217,826	-				+0.0
1,217,952	+				-0.2
1,217,956	-				+0.2
1,217,956	-				-0.3
1,218,011	+		HGI48_RS05780	0.37	+0.3
1,218,022	+		HGI48_RS05780	0.44	-0.7
1,218,022	+		HGI48_RS05780	0.44	-0.9
1,218,022	+		HGI48_RS05780	0.44	+0.2
1,218,050	+		HGI48_RS05780	0.64	-0.5
1,218,050	+				+0.7
1,218,051	-		HGI48_RS05780	0.65	-1.3
1,218,051	-		HGI48_RS05780	0.65	+0.2
1,218,090	+				+0.1
1,218,090	+				-1.9
1,218,091	-				-1.3
1,218,091	-				-0.6
1,218,091	-				+0.7
1,218,091	-				+0.7
1,218,094	-				+0.3
1,218,106	-				+1.2
1,218,164	+		HGI48_RS05785	0.19	+0.4
1,218,179	-		HGI48_RS05785	0.25	-0.7
1,218,199	+		HGI48_RS05785	0.33	-2.3
1,218,199	+		HGI48_RS05785	0.33	-0.8
1,218,199	+		HGI48_RS05785	0.33	-0.1
1,218,199	+		HGI48_RS05785	0.33	-0.3
1,218,200	-		HGI48_RS05785	0.33	-1.3
1,218,200	-		HGI48_RS05785	0.33	-1.7
1,218,200	-		HGI48_RS05785	0.33	+0.9
1,218,202	+		HGI48_RS05785	0.34	+0.2
1,218,203	-		HGI48_RS05785	0.34	-0.3
1,218,203	-		HGI48_RS05785	0.34	+0.0
1,218,238	+		HGI48_RS05785	0.48	-2.7
1,218,238	+		HGI48_RS05785	0.48	-0.4
1,218,238	+		HGI48_RS05785	0.48	-1.3
1,218,238	+		HGI48_RS05785	0.48	-1.2
1,218,238	+		HGI48_RS05785	0.48	-1.1
1,218,238	+		HGI48_RS05785	0.48	+0.2
1,218,239	-		HGI48_RS05785	0.48	+0.2
1,218,239	-		HGI48_RS05785	0.48	-1.3
1,218,244	+		HGI48_RS05785	0.50	+0.5
1,218,265	+		HGI48_RS05785	0.59	-0.2
1,218,266	-		HGI48_RS05785	0.59	+0.9
1,218,343	+				+0.1
1,218,344	-				+0.2
1,218,347	+				-1.7
1,218,347	+				+1.0
1,218,347	+				+0.3
1,218,348	-				-0.9
1,218,348	-				+1.5
1,218,435	+				+0.7
1,218,435	+				-0.9
1,218,436	-				+0.1
1,218,490	-				+0.7
1,218,520	+				+1.0
1,218,520	+				-0.0
1,218,529	+				+1.9
1,218,529	+				-1.3
1,218,529	+				-1.1
1,218,530	-				-0.9
1,218,530	-				-0.5
1,218,531	+				-1.3
1,218,531	+				-0.6
1,218,531	+				+0.9
1,218,531	+				-0.7
1,218,531	+				-0.7
1,218,531	+				+0.9
1,218,532	-				+0.8
1,218,532	-				+0.7
1,218,532	-				-0.9
1,218,532	-				+0.3
1,218,532	-				-0.4
1,218,540	+				+0.1
1,218,611	+				-1.7
1,218,611	+				-3.2
1,218,611	+				+2.3
1,218,639	+				-1.4
1,218,640	-				-0.3
1,218,640	-				-0.9
1,218,640	-				-2.0
1,218,724	+				-1.9
1,218,808	+				-2.1
1,218,809	-				-1.9
1,218,809	-				+0.7
1,218,809	-				-1.9
1,218,911	+		HGI48_RS05790	0.12	-0.9
1,218,911	+		HGI48_RS05790	0.12	-0.1
1,218,911	+		HGI48_RS05790	0.12	-0.9
1,218,911	+		HGI48_RS05790	0.12	-0.7
1,218,912	-		HGI48_RS05790	0.12	-0.8
1,218,921	+		HGI48_RS05790	0.12	-1.4
1,219,023	+		HGI48_RS05790	0.15	+0.7
1,219,023	+		HGI48_RS05790	0.15	-1.9
1,219,023	+		HGI48_RS05790	0.15	-0.9
1,219,024	-		HGI48_RS05790	0.15	-2.7
1,219,024	-		HGI48_RS05790	0.15	+0.1
1,219,063	+		HGI48_RS05790	0.17	-2.2
1,219,064	-		HGI48_RS05790	0.17	-2.7
1,219,067	-				-0.9
1,219,067	-		HGI48_RS05790	0.17	+0.5
1,219,067	-		HGI48_RS05790	0.17	-0.9
1,219,067	-				-0.9
1,219,114	+		HGI48_RS05790	0.18	-0.8
1,219,114	+		HGI48_RS05790	0.18	-2.3
1,219,114	+				-0.3
1,219,114	+		HGI48_RS05790	0.18	-2.3
1,219,115	-		HGI48_RS05790	0.18	-1.1
1,219,240	+		HGI48_RS05790	0.22	-1.7
1,219,242	+		HGI48_RS05790	0.22	-1.1
1,219,242	+		HGI48_RS05790	0.22	-2.5
1,219,242	+		HGI48_RS05790	0.22	-1.9
1,219,243	-		HGI48_RS05790	0.22	-2.5
1,219,243	-		HGI48_RS05790	0.22	-2.5
1,219,267	-		HGI48_RS05790	0.23	-1.9
1,219,329	+		HGI48_RS05790	0.25	-0.6
1,219,329	+		HGI48_RS05790	0.25	-2.3
1,219,330	-		HGI48_RS05790	0.25	-1.9
1,219,330	-		HGI48_RS05790	0.25	-1.7
1,219,330	-		HGI48_RS05790	0.25	-1.6
1,219,367	-		HGI48_RS05790	0.26	+1.4
1,219,384	-		HGI48_RS05790	0.27	-1.7
1,219,384	-		HGI48_RS05790	0.27	-2.8
1,219,425	+		HGI48_RS05790	0.28	-3.2
1,219,426	-		HGI48_RS05790	0.28	-0.7
1,219,610	+		HGI48_RS05790	0.34	-0.3
1,219,611	-		HGI48_RS05790	0.34	-2.1
1,219,611	-		HGI48_RS05790	0.34	-2.5
1,219,611	-		HGI48_RS05790	0.34	-1.9
1,219,708	+		HGI48_RS05790	0.37	-0.3
1,219,805	+		HGI48_RS05790	0.40	-1.9
1,219,880	+		HGI48_RS05790	0.43	-1.1
1,219,880	+		HGI48_RS05790	0.43	-2.1
1,219,881	-		HGI48_RS05790	0.43	-0.3
1,219,881	-		HGI48_RS05790	0.43	-2.7
1,219,881	-				+0.1
1,219,906	-				+0.1
1,219,906	-		HGI48_RS05790	0.43	-2.9
1,219,906	-		HGI48_RS05790	0.43	-1.9
1,219,908	+				-0.9
1,219,908	+		HGI48_RS05790	0.43	-0.0
1,219,908	+		HGI48_RS05790	0.43	+0.4
1,219,909	-		HGI48_RS05790	0.43	-0.7
1,219,909	-		HGI48_RS05790	0.43	-3.5
1,219,909	-		HGI48_RS05790	0.43	-1.3
1,219,909	-		HGI48_RS05790	0.43	-1.7
1,219,909	-		HGI48_RS05790	0.43	-1.9
1,219,971	-		HGI48_RS05790	0.45	-0.1
1,219,971	-		HGI48_RS05790	0.45	-0.9
1,219,986	-				-0.3
1,219,986	-		HGI48_RS05790	0.46	-2.5
1,220,077	-		HGI48_RS05790	0.49	-1.3
1,220,077	-		HGI48_RS05790	0.49	-0.6
1,220,118	+		HGI48_RS05790	0.50	-1.9
1,220,119	-				+1.7
1,220,199	-		HGI48_RS05790	0.53	-1.8
1,220,257	+				+2.2
1,220,257	+		HGI48_RS05790	0.55	-1.3
1,220,257	+		HGI48_RS05790	0.55	+0.2
1,220,257	+		HGI48_RS05790	0.55	-1.3
1,220,258	-		HGI48_RS05790	0.55	-2.2
1,220,258	-				-0.3
1,220,258	-		HGI48_RS05790	0.55	-4.4
1,220,258	-		HGI48_RS05790	0.55	-1.3
1,220,258	-		HGI48_RS05790	0.55	+0.2
1,220,258	-		HGI48_RS05790	0.55	-1.6
1,220,258	-		HGI48_RS05790	0.55	-0.1
1,220,289	+		HGI48_RS05790	0.56	-2.8
1,220,290	-		HGI48_RS05790	0.56	-2.1
1,220,328	-		HGI48_RS05790	0.57	-2.3
1,220,328	-		HGI48_RS05790	0.57	-1.7
1,220,333	+		HGI48_RS05790	0.57	+0.7
1,220,333	+		HGI48_RS05790	0.57	-1.4
1,220,333	+				+0.1
1,220,334	-		HGI48_RS05790	0.57	-0.9
1,220,478	-		HGI48_RS05790	0.62	+0.1
1,220,565	-		HGI48_RS05790	0.64	-2.7
1,220,584	+		HGI48_RS05790	0.65	-0.9
1,220,584	+		HGI48_RS05790	0.65	-3.4
1,220,585	-		HGI48_RS05790	0.65	-0.7
1,220,622	+		HGI48_RS05790	0.66	+0.0
1,220,622	+				+0.7
1,220,622	+		HGI48_RS05790	0.66	-0.9
1,220,622	+		HGI48_RS05790	0.66	-2.6
1,220,623	-		HGI48_RS05790	0.66	+0.1
1,220,623	-		HGI48_RS05790	0.66	-1.1
1,220,623	-		HGI48_RS05790	0.66	-0.5
1,220,623	-		HGI48_RS05790	0.66	-0.1
1,220,623	-		HGI48_RS05790	0.66	-1.1
1,220,623	-				+1.1
1,220,684	+		HGI48_RS05790	0.68	-1.9
1,220,771	+		HGI48_RS05790	0.71	-1.7
1,220,815	+		HGI48_RS05790	0.72	-1.7
1,220,816	-		HGI48_RS05790	0.72	-3.8
1,220,816	-		HGI48_RS05790	0.72	-1.9
1,220,847	+		HGI48_RS05790	0.73	+1.4
1,220,847	+		HGI48_RS05790	0.73	-1.7
1,220,847	+		HGI48_RS05790	0.73	+0.2
1,220,847	+		HGI48_RS05790	0.73	-1.7
1,220,848	-		HGI48_RS05790	0.73	+1.0
1,220,848	-		HGI48_RS05790	0.73	+0.7
1,220,848	-		HGI48_RS05790	0.73	-0.8
1,220,848	-		HGI48_RS05790	0.73	-1.9
1,220,848	-		HGI48_RS05790	0.73	-2.3
1,220,848	-		HGI48_RS05790	0.73	+1.8
1,220,865	+				+0.1
1,220,865	+		HGI48_RS05790	0.74	-0.7
1,220,865	+		HGI48_RS05790	0.74	+1.5
1,220,865	+		HGI48_RS05790	0.74	-1.7
1,220,866	-		HGI48_RS05790	0.74	+0.9
1,220,939	+		HGI48_RS05790	0.76	-0.3
1,220,939	+		HGI48_RS05790	0.76	-1.9
1,221,103	-		HGI48_RS05790	0.81	-1.8
1,221,103	-		HGI48_RS05790	0.81	+0.4
1,221,103	-		HGI48_RS05790	0.81	-2.1
1,221,107	-		HGI48_RS05790	0.82	-2.8
1,221,107	-		HGI48_RS05790	0.82	-0.9
1,221,134	-		HGI48_RS05790	0.82	-3.2
1,221,144	+				+0.7
1,221,205	+		HGI48_RS05790	0.85	-2.7
1,221,229	+		HGI48_RS05790	0.85	-2.7
1,221,230	-		HGI48_RS05790	0.85	-0.8
1,221,368	+		HGI48_RS05790	0.90	+0.1
1,221,369	-		HGI48_RS05790	0.90	-0.3
1,221,419	+				-1.5
1,221,457	+				-0.6
1,221,457	+				+0.1
1,221,457	+				-3.6
1,221,457	+				-3.7
1,221,458	-				-1.7
1,221,458	-				-1.7
1,221,458	-				+0.4
1,221,458	-				-0.9
1,221,458	-				-1.7
1,221,458	-				-1.9
1,221,458	-				-2.1
1,221,458	-				-1.9
1,221,459	+				-2.8
1,221,459	+				-0.1
1,221,459	+				-0.3
1,221,459	+				-0.3
1,221,459	+				-0.3
1,221,459	+				-2.8
1,221,459	+				-0.9
1,221,460	-				-2.1
1,221,460	-				-1.4
1,221,460	-				+0.4
1,221,460	-				-3.8
1,221,460	-				-0.6
1,221,460	-				-1.8
1,221,460	-				+1.7
1,221,460	-				-1.3
1,221,464	+				+0.1
1,221,465	-				-2.7
1,221,465	-				-1.9
1,221,465	-				-1.1
1,221,596	-				-2.8
1,221,672	-				-0.7
1,221,706	+				-2.3
1,221,714	-				-0.9
1,221,774	+				-1.3
1,221,774	+				-1.4
1,221,774	+				-2.8
1,221,775	-				-1.9
1,221,818	+				-1.5
1,222,130	+		HGI48_RS05795	0.36	-1.9
1,222,130	+		HGI48_RS05795	0.36	-0.7
1,222,131	-		HGI48_RS05795	0.36	-2.1
1,222,133	-		HGI48_RS05795	0.36	+0.1
1,222,255	+		HGI48_RS05795	0.46	+0.7
1,222,255	+		HGI48_RS05795	0.46	-0.7
1,222,255	+		HGI48_RS05795	0.46	-2.7
1,222,255	+		HGI48_RS05795	0.46	+0.3
1,222,256	-		HGI48_RS05795	0.46	+1.4
1,222,256	-		HGI48_RS05795	0.46	+0.1
1,222,256	-		HGI48_RS05795	0.46	-1.3
1,222,256	-		HGI48_RS05795	0.46	-1.9
1,222,338	-		HGI48_RS05795	0.53	-1.9
1,222,375	+		HGI48_RS05795	0.56	-0.7
1,222,375	+				+0.7
1,222,376	-		HGI48_RS05795	0.56	-2.9
1,222,465	+		HGI48_RS05795	0.64	-2.7
1,222,466	-		HGI48_RS05795	0.64	+0.1
1,222,466	-				+1.1
1,222,483	+		HGI48_RS05795	0.65	-1.1
1,222,483	+		HGI48_RS05795	0.65	-2.3
1,222,483	+		HGI48_RS05795	0.65	-2.7
1,222,484	-		HGI48_RS05795	0.65	-1.0
1,222,592	-		HGI48_RS05795	0.74	-1.6
1,222,613	-		HGI48_RS05795	0.76	-1.3
1,222,670	+		HGI48_RS05795	0.81	-2.1