Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03995

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03990 and HGI48_RS03995 are separated by 44 nucleotidesHGI48_RS03995 and HGI48_RS04000 are separated by 106 nucleotidesHGI48_RS04000 and HGI48_RS04005 are separated by 28 nucleotides HGI48_RS03990: HGI48_RS03990 - pirin family protein, at 845,918 to 846,826 _RS03990 HGI48_RS03995: HGI48_RS03995 - pirin family protein, at 846,871 to 847,728 _RS03995 HGI48_RS04000: HGI48_RS04000 - DoxX family protein, at 847,835 to 848,245 _RS04000 HGI48_RS04005: HGI48_RS04005 - FMN-dependent NADH-azoreductase, at 848,274 to 848,882 _RS04005 Position (kb) 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 845.872 kb on + strandat 845.872 kb on + strandat 845.873 kb on - strandat 846.031 kb on + strand, within HGI48_RS03990at 846.031 kb on + strand, within HGI48_RS03990at 846.031 kb on + strand, within HGI48_RS03990at 846.032 kb on - strand, within HGI48_RS03990at 846.042 kb on + strand, within HGI48_RS03990at 846.043 kb on - strandat 846.045 kb on + strand, within HGI48_RS03990at 846.045 kb on + strand, within HGI48_RS03990at 846.045 kb on + strand, within HGI48_RS03990at 846.253 kb on - strand, within HGI48_RS03990at 846.291 kb on + strand, within HGI48_RS03990at 846.291 kb on + strand, within HGI48_RS03990at 846.291 kb on + strand, within HGI48_RS03990at 846.291 kb on + strand, within HGI48_RS03990at 846.292 kb on - strand, within HGI48_RS03990at 846.292 kb on - strand, within HGI48_RS03990at 846.292 kb on - strand, within HGI48_RS03990at 846.374 kb on + strand, within HGI48_RS03990at 846.374 kb on + strand, within HGI48_RS03990at 846.374 kb on + strand, within HGI48_RS03990at 846.374 kb on + strand, within HGI48_RS03990at 846.375 kb on - strandat 846.375 kb on - strand, within HGI48_RS03990at 846.375 kb on - strand, within HGI48_RS03990at 846.394 kb on - strand, within HGI48_RS03990at 846.537 kb on + strand, within HGI48_RS03990at 846.576 kb on + strand, within HGI48_RS03990at 846.781 kb on + strandat 846.782 kb on - strandat 846.811 kb on + strandat 846.818 kb on - strandat 846.818 kb on - strandat 846.833 kb on + strandat 846.834 kb on - strandat 846.853 kb on + strandat 846.853 kb on + strandat 846.853 kb on + strandat 846.854 kb on - strandat 846.854 kb on - strandat 846.854 kb on - strandat 846.905 kb on + strandat 846.905 kb on + strandat 846.906 kb on - strandat 847.142 kb on + strand, within HGI48_RS03995at 847.142 kb on + strand, within HGI48_RS03995at 847.143 kb on - strand, within HGI48_RS03995at 847.143 kb on - strand, within HGI48_RS03995at 847.143 kb on - strandat 847.143 kb on - strand, within HGI48_RS03995at 847.190 kb on - strand, within HGI48_RS03995at 847.198 kb on + strand, within HGI48_RS03995at 847.199 kb on - strand, within HGI48_RS03995at 847.233 kb on + strand, within HGI48_RS03995at 847.234 kb on - strand, within HGI48_RS03995at 847.234 kb on - strand, within HGI48_RS03995at 847.256 kb on + strand, within HGI48_RS03995at 847.372 kb on + strand, within HGI48_RS03995at 847.372 kb on + strand, within HGI48_RS03995at 847.372 kb on + strand, within HGI48_RS03995at 847.372 kb on + strand, within HGI48_RS03995at 847.372 kb on + strand, within HGI48_RS03995at 847.372 kb on + strand, within HGI48_RS03995at 847.373 kb on - strand, within HGI48_RS03995at 847.373 kb on - strand, within HGI48_RS03995at 847.373 kb on - strand, within HGI48_RS03995at 847.373 kb on - strand, within HGI48_RS03995at 847.373 kb on - strand, within HGI48_RS03995at 847.373 kb on - strand, within HGI48_RS03995at 847.511 kb on + strand, within HGI48_RS03995at 847.511 kb on + strand, within HGI48_RS03995at 847.511 kb on + strandat 847.511 kb on + strand, within HGI48_RS03995at 847.511 kb on + strandat 847.512 kb on - strand, within HGI48_RS03995at 847.512 kb on - strandat 847.512 kb on - strand, within HGI48_RS03995at 847.512 kb on - strand, within HGI48_RS03995at 847.512 kb on - strand, within HGI48_RS03995at 847.512 kb on - strand, within HGI48_RS03995at 847.512 kb on - strand, within HGI48_RS03995at 847.512 kb on - strandat 848.105 kb on - strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.248 kb on + strandat 848.249 kb on - strandat 848.249 kb on - strandat 848.249 kb on - strandat 848.249 kb on - strandat 848.249 kb on - strandat 848.249 kb on - strandat 848.249 kb on - strandat 848.410 kb on + strand, within HGI48_RS04005at 848.410 kb on + strand, within HGI48_RS04005at 848.410 kb on + strand, within HGI48_RS04005at 848.410 kb on + strand, within HGI48_RS04005at 848.410 kb on + strand, within HGI48_RS04005at 848.410 kb on + strand, within HGI48_RS04005at 848.411 kb on - strand, within HGI48_RS04005at 848.455 kb on + strand, within HGI48_RS04005at 848.455 kb on + strand, within HGI48_RS04005at 848.455 kb on + strand, within HGI48_RS04005at 848.456 kb on - strand, within HGI48_RS04005at 848.456 kb on - strand, within HGI48_RS04005at 848.456 kb on - strand, within HGI48_RS04005at 848.458 kb on - strand, within HGI48_RS04005at 848.458 kb on - strand, within HGI48_RS04005at 848.527 kb on + strand, within HGI48_RS04005at 848.573 kb on + strand, within HGI48_RS04005at 848.573 kb on + strand, within HGI48_RS04005at 848.574 kb on - strand, within HGI48_RS04005at 848.599 kb on + strand, within HGI48_RS04005at 848.599 kb on + strand, within HGI48_RS04005at 848.599 kb on + strand, within HGI48_RS04005at 848.599 kb on + strand, within HGI48_RS04005at 848.599 kb on + strand, within HGI48_RS04005at 848.600 kb on - strand, within HGI48_RS04005at 848.600 kb on - strand, within HGI48_RS04005at 848.600 kb on - strand, within HGI48_RS04005at 848.600 kb on - strand, within HGI48_RS04005at 848.715 kb on + strand, within HGI48_RS04005

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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845,872 + -1.1
845,872 + -0.9
845,873 - -0.2
846,031 + HGI48_RS03990 0.12 -1.4
846,031 + HGI48_RS03990 0.12 -1.9
846,031 + HGI48_RS03990 0.12 -1.7
846,032 - HGI48_RS03990 0.13 +0.7
846,042 + HGI48_RS03990 0.14 -0.6
846,043 - +1.7
846,045 + HGI48_RS03990 0.14 -0.2
846,045 + HGI48_RS03990 0.14 -1.3
846,045 + HGI48_RS03990 0.14 -0.0
846,253 - HGI48_RS03990 0.37 -1.1
846,291 + HGI48_RS03990 0.41 -0.6
846,291 + HGI48_RS03990 0.41 -2.1
846,291 + HGI48_RS03990 0.41 -0.2
846,291 + HGI48_RS03990 0.41 +0.1
846,292 - HGI48_RS03990 0.41 -0.5
846,292 - HGI48_RS03990 0.41 -1.3
846,292 - HGI48_RS03990 0.41 +0.4
846,374 + HGI48_RS03990 0.50 -1.6
846,374 + HGI48_RS03990 0.50 -1.0
846,374 + HGI48_RS03990 0.50 -0.5
846,374 + HGI48_RS03990 0.50 +0.4
846,375 - -0.9
846,375 - HGI48_RS03990 0.50 +0.0
846,375 - HGI48_RS03990 0.50 -0.6
846,394 - HGI48_RS03990 0.52 +0.2
846,537 + HGI48_RS03990 0.68 -0.2
846,576 + HGI48_RS03990 0.72 +0.2
846,781 + +2.3
846,782 - -1.9
846,811 + -0.4
846,818 - -0.5
846,818 - +0.9
846,833 + -1.6
846,834 - -0.3
846,853 + -1.3
846,853 + -0.0
846,853 + -0.9
846,854 - -0.3
846,854 - -0.9
846,854 - +0.4
846,905 + -1.3
846,905 + +0.8
846,906 - +0.9
847,142 + HGI48_RS03995 0.32 +0.5
847,142 + HGI48_RS03995 0.32 +1.4
847,143 - HGI48_RS03995 0.32 -1.6
847,143 - HGI48_RS03995 0.32 -0.4
847,143 - +1.1
847,143 - HGI48_RS03995 0.32 -0.3
847,190 - HGI48_RS03995 0.37 +1.7
847,198 + HGI48_RS03995 0.38 -0.2
847,199 - HGI48_RS03995 0.38 +0.0
847,233 + HGI48_RS03995 0.42 -0.2
847,234 - HGI48_RS03995 0.42 -1.9
847,234 - HGI48_RS03995 0.42 -1.0
847,256 + HGI48_RS03995 0.45 -0.6
847,372 + HGI48_RS03995 0.58 +0.7
847,372 + HGI48_RS03995 0.58 -1.1
847,372 + HGI48_RS03995 0.58 +0.1
847,372 + HGI48_RS03995 0.58 -0.8
847,372 + HGI48_RS03995 0.58 -1.9
847,372 + HGI48_RS03995 0.58 -0.5
847,373 - HGI48_RS03995 0.59 +0.6
847,373 - HGI48_RS03995 0.59 +0.1
847,373 - HGI48_RS03995 0.59 -0.0
847,373 - HGI48_RS03995 0.59 -0.2
847,373 - HGI48_RS03995 0.59 -0.2
847,373 - HGI48_RS03995 0.59 -1.3
847,511 + HGI48_RS03995 0.75 +0.0
847,511 + HGI48_RS03995 0.75 -2.1
847,511 + +0.7
847,511 + HGI48_RS03995 0.75 -0.8
847,511 + -0.9
847,512 - HGI48_RS03995 0.75 -0.2
847,512 - +0.1
847,512 - HGI48_RS03995 0.75 -1.2
847,512 - HGI48_RS03995 0.75 -0.7
847,512 - HGI48_RS03995 0.75 -0.2
847,512 - HGI48_RS03995 0.75 -0.8
847,512 - HGI48_RS03995 0.75 -0.6
847,512 - +2.0
848,105 - +0.7
848,248 + -0.9
848,248 + +0.1
848,248 + +0.1
848,248 + -0.7
848,248 + +2.3
848,248 + +1.8
848,248 + +1.7
848,248 + +0.4
848,248 + -0.9
848,248 + -0.3
848,248 + -1.0
848,248 + -0.7
848,249 - -0.3
848,249 - +1.4
848,249 - +0.1
848,249 - +0.4
848,249 - -0.3
848,249 - +0.7
848,249 - +0.5
848,410 + HGI48_RS04005 0.22 +1.3
848,410 + HGI48_RS04005 0.22 +0.7
848,410 + HGI48_RS04005 0.22 -0.6
848,410 + HGI48_RS04005 0.22 +0.4
848,410 + HGI48_RS04005 0.22 +0.2
848,410 + HGI48_RS04005 0.22 -0.3
848,411 - HGI48_RS04005 0.22 +0.2
848,455 + HGI48_RS04005 0.30 +0.2
848,455 + HGI48_RS04005 0.30 -0.1
848,455 + HGI48_RS04005 0.30 -1.0
848,456 - HGI48_RS04005 0.30 -0.8
848,456 - HGI48_RS04005 0.30 -0.9
848,456 - HGI48_RS04005 0.30 -0.5
848,458 - HGI48_RS04005 0.30 +0.7
848,458 - HGI48_RS04005 0.30 +0.3
848,527 + HGI48_RS04005 0.42 -1.0
848,573 + HGI48_RS04005 0.49 -0.0
848,573 + HGI48_RS04005 0.49 -2.8
848,574 - HGI48_RS04005 0.49 -1.1
848,599 + HGI48_RS04005 0.53 -0.9
848,599 + HGI48_RS04005 0.53 +0.4
848,599 + HGI48_RS04005 0.53 +0.2
848,599 + HGI48_RS04005 0.53 +0.2
848,599 + HGI48_RS04005 0.53 -0.3
848,600 - HGI48_RS04005 0.54 +0.8
848,600 - HGI48_RS04005 0.54 -1.9
848,600 - HGI48_RS04005 0.54 +0.3
848,600 - HGI48_RS04005 0.54 +0.3
848,715 + HGI48_RS04005 0.72 -0.9

Or see this region's nucleotide sequence