Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03205

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS03200 and HGI48_RS03205 are separated by 105 nucleotidesHGI48_RS03205 and HGI48_RS03210 are separated by 8 nucleotides HGI48_RS03200: HGI48_RS03200 - ATP-dependent zinc metalloprotease FtsH, at 675,830 to 677,782 _RS03200 HGI48_RS03205: HGI48_RS03205 - dihydropteroate synthase, at 677,888 to 678,721 _RS03205 HGI48_RS03210: HGI48_RS03210 - phosphoglucosamine mutase, at 678,730 to 680,067 _RS03210 Position (kb) 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1at 677.734 kb on + strandat 677.734 kb on + strandat 677.735 kb on - strandat 677.752 kb on + strandat 677.752 kb on + strandat 677.753 kb on - strandat 677.753 kb on - strandat 677.753 kb on - strandat 677.753 kb on - strandat 677.753 kb on - strandat 677.753 kb on - strandat 677.753 kb on - strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.780 kb on + strandat 677.781 kb on - strandat 677.781 kb on - strandat 677.781 kb on - strandat 677.781 kb on - strandat 677.781 kb on - strandat 677.781 kb on - strandat 677.859 kb on - strandat 677.875 kb on + strandat 677.875 kb on + strandat 678.348 kb on - strand, within HGI48_RS03205at 678.392 kb on - strand, within HGI48_RS03205at 678.392 kb on - strand, within HGI48_RS03205at 678.468 kb on + strand, within HGI48_RS03205at 678.475 kb on + strand, within HGI48_RS03205at 678.476 kb on - strand, within HGI48_RS03205at 678.684 kb on + strandat 678.684 kb on + strandat 678.684 kb on + strandat 678.685 kb on - strandat 678.685 kb on - strandat 678.685 kb on - strandat 678.685 kb on - strandat 678.685 kb on - strandat 678.685 kb on - strandat 678.719 kb on + strandat 678.729 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
677,734 + -1.8
677,734 + -1.8
677,735 - -2.9
677,752 + -0.8
677,752 + -0.6
677,753 - -2.4
677,753 - -0.8
677,753 - -2.5
677,753 - -0.2
677,753 - -0.2
677,753 - -1.2
677,753 - -1.8
677,780 + +0.3
677,780 + -1.1
677,780 + +0.9
677,780 + -0.2
677,780 + -0.8
677,780 + -0.9
677,780 + -2.1
677,780 + -0.2
677,780 + -0.4
677,781 - -2.6
677,781 - -0.4
677,781 - -2.1
677,781 - -2.2
677,781 - -1.5
677,781 - +1.2
677,859 - -0.8
677,875 + -1.6
677,875 + +1.2
678,348 - HGI48_RS03205 0.55 -1.6
678,392 - HGI48_RS03205 0.60 +1.3
678,392 - HGI48_RS03205 0.60 +1.1
678,468 + HGI48_RS03205 0.70 +0.0
678,475 + HGI48_RS03205 0.70 -1.2
678,476 - HGI48_RS03205 0.71 +0.3
678,684 + -1.4
678,684 + -2.9
678,684 + -3.1
678,685 - -2.6
678,685 - -3.2
678,685 - -2.6
678,685 - +0.1
678,685 - -0.5
678,685 - -0.8
678,719 + -0.8
678,729 + -2.2

Or see this region's nucleotide sequence