Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02655 and HGI48_RS02660 are separated by 103 nucleotides HGI48_RS02660 and HGI48_RS02665 are separated by 120 nucleotides HGI48_RS02665 and HGI48_RS02670 are separated by 202 nucleotides HGI48_RS02670 and HGI48_RS02675 are separated by 162 nucleotides
HGI48_RS02655: HGI48_RS02655 - helix-turn-helix transcriptional regulator, at 576,335 to 576,601
_RS02655
HGI48_RS02660: HGI48_RS02660 - helix-turn-helix transcriptional regulator, at 576,705 to 576,965
_RS02660
HGI48_RS02665: HGI48_RS02665 - helix-turn-helix domain-containing protein, at 577,086 to 577,307
_RS02665
HGI48_RS02670: HGI48_RS02670 - tRNA-Phe, at 577,510 to 577,585
_RS02670
HGI48_RS02675: HGI48_RS02675 - transcriptional regulator, at 577,748 to 578,323
_RS02675
Position (kb) 577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 576.104 kb on + strand at 576.104 kb on + strand at 576.104 kb on + strand at 576.104 kb on + strand at 576.105 kb on - strand at 576.105 kb on - strand at 576.175 kb on - strand at 576.192 kb on + strand at 576.193 kb on - strand at 576.195 kb on - strand at 576.195 kb on - strand at 576.253 kb on - strand at 576.253 kb on - strand at 576.266 kb on + strand at 576.323 kb on - strand at 576.323 kb on - strand at 576.324 kb on + strand at 576.325 kb on - strand at 576.325 kb on - strand at 576.325 kb on - strand at 576.407 kb on - strand at 576.409 kb on - strand, within HGI48_RS02655 at 576.430 kb on + strand, within HGI48_RS02655 at 576.476 kb on + strand, within HGI48_RS02655 at 576.476 kb on + strand at 576.476 kb on + strand, within HGI48_RS02655 at 576.476 kb on + strand, within HGI48_RS02655 at 576.477 kb on - strand, within HGI48_RS02655 at 576.477 kb on - strand, within HGI48_RS02655 at 576.477 kb on - strand, within HGI48_RS02655 at 576.478 kb on + strand, within HGI48_RS02655 at 576.490 kb on - strand, within HGI48_RS02655 at 576.527 kb on - strand, within HGI48_RS02655 at 576.601 kb on + strand at 576.602 kb on - strand at 576.602 kb on - strand at 576.616 kb on + strand at 576.616 kb on + strand at 576.622 kb on + strand at 576.622 kb on + strand at 576.623 kb on - strand at 576.637 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.694 kb on - strand at 576.725 kb on + strand at 576.730 kb on + strand at 576.731 kb on - strand, within HGI48_RS02660 at 576.772 kb on + strand at 576.778 kb on + strand, within HGI48_RS02660 at 576.795 kb on - strand, within HGI48_RS02660 at 576.795 kb on - strand, within HGI48_RS02660 at 576.840 kb on + strand, within HGI48_RS02660 at 576.840 kb on + strand, within HGI48_RS02660 at 576.840 kb on + strand, within HGI48_RS02660 at 576.840 kb on + strand, within HGI48_RS02660 at 576.841 kb on - strand, within HGI48_RS02660 at 576.841 kb on - strand, within HGI48_RS02660 at 576.841 kb on - strand, within HGI48_RS02660 at 576.841 kb on - strand, within HGI48_RS02660 at 576.854 kb on - strand, within HGI48_RS02660 at 576.970 kb on + strand at 576.971 kb on - strand at 576.987 kb on + strand at 576.987 kb on + strand at 576.987 kb on + strand at 576.987 kb on + strand at 576.988 kb on - strand at 576.988 kb on - strand at 576.988 kb on - strand at 577.054 kb on + strand at 577.055 kb on - strand at 577.055 kb on - strand at 577.055 kb on - strand at 577.055 kb on - strand at 577.066 kb on - strand at 577.066 kb on - strand at 577.072 kb on + strand at 577.073 kb on - strand at 577.073 kb on - strand at 577.095 kb on - strand at 577.115 kb on + strand, within HGI48_RS02665 at 577.167 kb on - strand, within HGI48_RS02665 at 577.177 kb on + strand at 577.220 kb on + strand, within HGI48_RS02665 at 577.310 kb on + strand at 577.426 kb on + strand at 577.426 kb on + strand at 577.426 kb on + strand at 577.426 kb on + strand at 577.426 kb on + strand at 577.427 kb on - strand at 577.427 kb on - strand at 577.456 kb on - strand at 577.456 kb on - strand at 577.459 kb on + strand at 577.459 kb on + strand at 577.460 kb on - strand at 577.690 kb on + strand at 577.691 kb on - strand at 577.691 kb on - strand at 577.691 kb on - strand at 577.787 kb on + strand at 577.787 kb on + strand at 577.787 kb on + strand at 577.787 kb on + strand at 577.788 kb on - strand at 577.788 kb on - strand at 577.788 kb on - strand at 577.788 kb on - strand at 577.790 kb on + strand at 577.791 kb on - strand at 577.887 kb on - strand, within HGI48_RS02675 at 577.936 kb on + strand, within HGI48_RS02675 at 577.936 kb on + strand, within HGI48_RS02675 at 577.936 kb on + strand, within HGI48_RS02675 at 577.937 kb on - strand, within HGI48_RS02675 at 577.937 kb on - strand, within HGI48_RS02675 at 577.942 kb on - strand, within HGI48_RS02675 at 577.942 kb on - strand, within HGI48_RS02675 at 577.942 kb on - strand, within HGI48_RS02675 at 577.948 kb on - strand, within HGI48_RS02675 at 578.132 kb on - strand at 578.140 kb on + strand at 578.140 kb on + strand, within HGI48_RS02675 at 578.140 kb on + strand at 578.175 kb on + strand, within HGI48_RS02675 at 578.248 kb on + strand, within HGI48_RS02675 at 578.249 kb on - strand, within HGI48_RS02675
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 576,104 + +0.3 576,104 + -1.3 576,104 + +0.6 576,104 + -1.5 576,105 - +0.8 576,105 - +0.5 576,175 - -0.2 576,192 + -0.6 576,193 - -0.2 576,195 - -0.5 576,195 - -0.9 576,253 - +0.7 576,253 - +1.6 576,266 + +0.8 576,323 - +0.1 576,323 - +0.8 576,324 + -0.8 576,325 - -1.0 576,325 - +0.1 576,325 - +0.8 576,407 - -0.8 576,409 - HGI48_RS02655 0.28 +2.0 576,430 + HGI48_RS02655 0.36 +0.2 576,476 + HGI48_RS02655 0.53 +0.1 576,476 + +2.1 576,476 + HGI48_RS02655 0.53 -1.5 576,476 + HGI48_RS02655 0.53 -0.1 576,477 - HGI48_RS02655 0.53 -0.5 576,477 - HGI48_RS02655 0.53 +0.4 576,477 - HGI48_RS02655 0.53 +0.8 576,478 + HGI48_RS02655 0.54 -1.2 576,490 - HGI48_RS02655 0.58 -0.7 576,527 - HGI48_RS02655 0.72 -0.5 576,601 + +0.1 576,602 - -0.8 576,602 - -0.2 576,616 + +0.7 576,616 + +0.5 576,622 + -1.2 576,622 + -1.8 576,623 - -1.3 576,637 + -0.6 576,648 + +0.2 576,648 + -0.4 576,648 + -0.2 576,694 - +0.4 576,725 + -0.9 576,730 + -1.8 576,731 - HGI48_RS02660 0.10 -0.6 576,772 + +1.8 576,778 + HGI48_RS02660 0.28 -0.2 576,795 - HGI48_RS02660 0.34 +0.6 576,795 - HGI48_RS02660 0.34 -0.8 576,840 + HGI48_RS02660 0.52 +0.3 576,840 + HGI48_RS02660 0.52 -1.2 576,840 + HGI48_RS02660 0.52 +1.6 576,840 + HGI48_RS02660 0.52 +0.4 576,841 - HGI48_RS02660 0.52 +0.1 576,841 - HGI48_RS02660 0.52 -0.9 576,841 - HGI48_RS02660 0.52 +1.6 576,841 - HGI48_RS02660 0.52 +0.8 576,854 - HGI48_RS02660 0.57 +0.8 576,970 + +0.6 576,971 - -2.8 576,987 + +1.5 576,987 + -2.4 576,987 + -1.5 576,987 + -1.2 576,988 - +1.2 576,988 - +0.1 576,988 - -0.9 577,054 + -0.4 577,055 - +0.6 577,055 - -0.5 577,055 - -0.0 577,055 - -0.5 577,066 - -0.5 577,066 - -1.4 577,072 + -0.8 577,073 - -3.1 577,073 - +0.1 577,095 - -0.4 577,115 + HGI48_RS02665 0.13 -1.0 577,167 - HGI48_RS02665 0.36 -0.8 577,177 + +1.5 577,220 + HGI48_RS02665 0.60 -0.8 577,310 + -0.8 577,426 + -0.8 577,426 + -1.5 577,426 + -1.0 577,426 + -1.2 577,426 + -0.2 577,427 - +0.6 577,427 - +0.5 577,456 - +0.4 577,456 - -0.2 577,459 + -0.6 577,459 + +0.1 577,460 - -0.2 577,690 + -0.9 577,691 - +0.1 577,691 - -0.2 577,691 - -1.2 577,787 + -0.9 577,787 + +0.1 577,787 + -0.2 577,787 + -0.2 577,788 - -0.1 577,788 - +0.1 577,788 - -0.1 577,788 - +0.1 577,790 + -1.7 577,791 - -0.4 577,887 - HGI48_RS02675 0.24 -0.2 577,936 + HGI48_RS02675 0.33 -1.5 577,936 + HGI48_RS02675 0.33 -0.2 577,936 + HGI48_RS02675 0.33 -1.0 577,937 - HGI48_RS02675 0.33 -1.5 577,937 - HGI48_RS02675 0.33 +0.1 577,942 - HGI48_RS02675 0.34 -1.6 577,942 - HGI48_RS02675 0.34 +0.8 577,942 - HGI48_RS02675 0.34 -0.0 577,948 - HGI48_RS02675 0.35 +1.0 578,132 - +0.8 578,140 + -0.8 578,140 + HGI48_RS02675 0.68 -1.1 578,140 + -0.8 578,175 + HGI48_RS02675 0.74 +0.1 578,248 + HGI48_RS02675 0.87 -0.6 578,249 - HGI48_RS02675 0.87 +0.6
Or see this region's nucleotide sequence