Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02125

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02115 and HGI48_RS02120 are separated by 2 nucleotidesHGI48_RS02120 and HGI48_RS02125 are separated by 12 nucleotidesHGI48_RS02125 and HGI48_RS02130 are separated by 91 nucleotides HGI48_RS02115: HGI48_RS02115 - transketolase, at 463,069 to 463,872 _RS02115 HGI48_RS02120: HGI48_RS02120 - transketolase family protein, at 463,875 to 464,795 _RS02120 HGI48_RS02125: HGI48_RS02125 - D-threitol dehydrogenase, at 464,808 to 465,611 _RS02125 HGI48_RS02130: HGI48_RS02130 - D-ribose ABC transporter substrate-binding protein, at 465,703 to 466,638 _RS02130 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2at 463.885 kb on + strandat 463.886 kb on - strandat 463.886 kb on - strandat 464.229 kb on - strandat 464.229 kb on - strand, within HGI48_RS02120at 464.229 kb on - strand, within HGI48_RS02120at 464.229 kb on - strand, within HGI48_RS02120at 464.229 kb on - strand, within HGI48_RS02120at 464.229 kb on - strand, within HGI48_RS02120at 464.343 kb on + strand, within HGI48_RS02120at 464.343 kb on + strand, within HGI48_RS02120at 464.343 kb on + strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strand, within HGI48_RS02120at 464.344 kb on - strandat 464.572 kb on - strand, within HGI48_RS02120at 464.596 kb on + strand, within HGI48_RS02120at 464.597 kb on - strand, within HGI48_RS02120at 464.597 kb on - strandat 464.597 kb on - strand, within HGI48_RS02120at 464.597 kb on - strand, within HGI48_RS02120at 464.640 kb on - strand, within HGI48_RS02120at 464.640 kb on - strand, within HGI48_RS02120at 464.694 kb on - strand, within HGI48_RS02120at 464.827 kb on - strandat 464.827 kb on - strandat 464.827 kb on - strandat 464.834 kb on + strandat 465.324 kb on + strand, within HGI48_RS02125at 465.325 kb on - strand, within HGI48_RS02125at 465.325 kb on - strand, within HGI48_RS02125at 465.404 kb on + strand, within HGI48_RS02125at 465.687 kb on + strandat 465.688 kb on - strandat 465.726 kb on - strandat 465.726 kb on - strandat 465.726 kb on - strandat 465.817 kb on + strand, within HGI48_RS02130at 465.817 kb on + strand, within HGI48_RS02130at 465.820 kb on + strand, within HGI48_RS02130at 465.821 kb on - strand, within HGI48_RS02130at 465.821 kb on - strandat 465.821 kb on - strand, within HGI48_RS02130at 465.821 kb on - strand, within HGI48_RS02130at 465.821 kb on - strand, within HGI48_RS02130at 465.821 kb on - strandat 465.821 kb on - strand, within HGI48_RS02130at 465.947 kb on + strand, within HGI48_RS02130at 465.947 kb on + strand, within HGI48_RS02130at 465.947 kb on + strand, within HGI48_RS02130at 465.948 kb on - strand, within HGI48_RS02130at 466.079 kb on + strand, within HGI48_RS02130at 466.080 kb on - strand, within HGI48_RS02130at 466.080 kb on - strand, within HGI48_RS02130at 466.153 kb on + strand, within HGI48_RS02130at 466.153 kb on + strand, within HGI48_RS02130at 466.153 kb on + strand, within HGI48_RS02130at 466.153 kb on + strand, within HGI48_RS02130at 466.154 kb on - strand, within HGI48_RS02130at 466.311 kb on - strand, within HGI48_RS02130at 466.311 kb on - strand, within HGI48_RS02130at 466.311 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strandat 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.528 kb on - strand, within HGI48_RS02130at 466.531 kb on + strand, within HGI48_RS02130at 466.531 kb on + strand, within HGI48_RS02130at 466.531 kb on + strand, within HGI48_RS02130at 466.531 kb on + strand, within HGI48_RS02130at 466.531 kb on + strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand, within HGI48_RS02130at 466.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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463,885 + +1.1
463,886 - +0.3
463,886 - +0.2
464,229 - +1.4
464,229 - HGI48_RS02120 0.38 -1.7
464,229 - HGI48_RS02120 0.38 -1.2
464,229 - HGI48_RS02120 0.38 -0.5
464,229 - HGI48_RS02120 0.38 -1.2
464,229 - HGI48_RS02120 0.38 -0.4
464,343 + HGI48_RS02120 0.51 +0.8
464,343 + HGI48_RS02120 0.51 -1.9
464,343 + HGI48_RS02120 0.51 -1.2
464,344 - HGI48_RS02120 0.51 +1.1
464,344 - HGI48_RS02120 0.51 -1.2
464,344 - HGI48_RS02120 0.51 +0.3
464,344 - HGI48_RS02120 0.51 -0.6
464,344 - HGI48_RS02120 0.51 -1.7
464,344 - HGI48_RS02120 0.51 +0.6
464,344 - HGI48_RS02120 0.51 -0.7
464,344 - HGI48_RS02120 0.51 -1.0
464,344 - HGI48_RS02120 0.51 -1.7
464,344 - HGI48_RS02120 0.51 +0.3
464,344 - HGI48_RS02120 0.51 +0.3
464,344 - -0.7
464,572 - HGI48_RS02120 0.76 -1.2
464,596 + HGI48_RS02120 0.78 -0.7
464,597 - HGI48_RS02120 0.78 -2.0
464,597 - +0.8
464,597 - HGI48_RS02120 0.78 +0.5
464,597 - HGI48_RS02120 0.78 +1.3
464,640 - HGI48_RS02120 0.83 -0.1
464,640 - HGI48_RS02120 0.83 -0.9
464,694 - HGI48_RS02120 0.89 -1.0
464,827 - -0.3
464,827 - -1.7
464,827 - -0.6
464,834 + +0.5
465,324 + HGI48_RS02125 0.64 +0.1
465,325 - HGI48_RS02125 0.64 -0.2
465,325 - HGI48_RS02125 0.64 -0.2
465,404 + HGI48_RS02125 0.74 +0.0
465,687 + -0.5
465,688 - +0.8
465,726 - +0.3
465,726 - +0.3
465,726 - +0.4
465,817 + HGI48_RS02130 0.12 +0.4
465,817 + HGI48_RS02130 0.12 +0.8
465,820 + HGI48_RS02130 0.12 -0.2
465,821 - HGI48_RS02130 0.13 +0.4
465,821 - +0.3
465,821 - HGI48_RS02130 0.13 +1.3
465,821 - HGI48_RS02130 0.13 -0.2
465,821 - HGI48_RS02130 0.13 -0.3
465,821 - -0.2
465,821 - HGI48_RS02130 0.13 -1.7
465,947 + HGI48_RS02130 0.26 -0.6
465,947 + HGI48_RS02130 0.26 +0.8
465,947 + HGI48_RS02130 0.26 -0.9
465,948 - HGI48_RS02130 0.26 -0.4
466,079 + HGI48_RS02130 0.40 -1.5
466,080 - HGI48_RS02130 0.40 -0.4
466,080 - HGI48_RS02130 0.40 -1.0
466,153 + HGI48_RS02130 0.48 +0.1
466,153 + HGI48_RS02130 0.48 +1.1
466,153 + HGI48_RS02130 0.48 +0.5
466,153 + HGI48_RS02130 0.48 -1.2
466,154 - HGI48_RS02130 0.48 -1.2
466,311 - HGI48_RS02130 0.65 +0.8
466,311 - HGI48_RS02130 0.65 -1.0
466,311 - HGI48_RS02130 0.65 +0.2
466,528 - HGI48_RS02130 0.88 +0.4
466,528 - HGI48_RS02130 0.88 -0.4
466,528 - HGI48_RS02130 0.88 +0.8
466,528 - HGI48_RS02130 0.88 +1.8
466,528 - +0.8
466,528 - HGI48_RS02130 0.88 -1.0
466,528 - HGI48_RS02130 0.88 -0.4
466,528 - HGI48_RS02130 0.88 +0.1
466,528 - HGI48_RS02130 0.88 -1.5
466,531 + HGI48_RS02130 0.88 -1.7
466,531 + HGI48_RS02130 0.88 +0.4
466,531 + HGI48_RS02130 0.88 -0.4
466,531 + HGI48_RS02130 0.88 -1.5
466,531 + HGI48_RS02130 0.88 -1.2
466,532 - HGI48_RS02130 0.89 -1.2
466,532 - HGI48_RS02130 0.89 +0.7
466,532 - HGI48_RS02130 0.89 +1.1
466,532 - HGI48_RS02130 0.89 -0.3
466,532 - HGI48_RS02130 0.89 -1.0
466,532 - HGI48_RS02130 0.89 -1.5
466,532 - HGI48_RS02130 0.89 +1.1
466,532 - +1.4

Or see this region's nucleotide sequence