Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02090 and HGI48_RS02095 are separated by 268 nucleotides HGI48_RS02095 and HGI48_RS02100 are separated by 67 nucleotides HGI48_RS02100 and HGI48_RS02105 overlap by 4 nucleotides
HGI48_RS02090: HGI48_RS02090 - HNH endonuclease, at 457,557 to 458,333
_RS02090
HGI48_RS02095: HGI48_RS02095 - MFS transporter, at 458,602 to 459,930
_RS02095
HGI48_RS02100: HGI48_RS02100 - DUF4276 family protein, at 459,998 to 460,618
_RS02100
HGI48_RS02105: HGI48_RS02105 - AAA family ATPase, at 460,615 to 461,775
_RS02105
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 457.615 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.616 kb on - strand at 457.654 kb on + strand at 457.654 kb on + strand, within HGI48_RS02090 at 457.654 kb on + strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.677 kb on - strand, within HGI48_RS02090 at 457.677 kb on - strand, within HGI48_RS02090 at 457.716 kb on + strand at 457.716 kb on + strand, within HGI48_RS02090 at 457.716 kb on + strand, within HGI48_RS02090 at 457.716 kb on + strand, within HGI48_RS02090 at 457.717 kb on - strand, within HGI48_RS02090 at 457.717 kb on - strand, within HGI48_RS02090 at 457.717 kb on - strand at 457.717 kb on - strand, within HGI48_RS02090 at 457.743 kb on + strand, within HGI48_RS02090 at 457.743 kb on + strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.785 kb on + strand at 457.785 kb on + strand, within HGI48_RS02090 at 457.785 kb on + strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand at 457.838 kb on + strand, within HGI48_RS02090 at 457.839 kb on - strand at 457.854 kb on + strand, within HGI48_RS02090 at 457.855 kb on - strand, within HGI48_RS02090 at 457.881 kb on - strand, within HGI48_RS02090 at 457.881 kb on - strand at 457.881 kb on - strand, within HGI48_RS02090 at 457.898 kb on - strand, within HGI48_RS02090 at 457.976 kb on - strand at 458.124 kb on + strand, within HGI48_RS02090 at 458.125 kb on - strand, within HGI48_RS02090 at 458.125 kb on - strand, within HGI48_RS02090 at 458.125 kb on - strand, within HGI48_RS02090 at 458.232 kb on - strand, within HGI48_RS02090 at 458.232 kb on - strand, within HGI48_RS02090 at 458.269 kb on - strand at 458.278 kb on + strand at 458.279 kb on - strand at 458.279 kb on - strand at 458.285 kb on + strand at 458.298 kb on + strand at 458.299 kb on - strand at 458.299 kb on - strand at 458.299 kb on - strand at 458.351 kb on - strand at 458.351 kb on - strand at 458.355 kb on + strand at 458.356 kb on - strand at 458.371 kb on - strand at 458.371 kb on - strand at 458.375 kb on + strand at 458.376 kb on - strand at 458.379 kb on + strand at 458.379 kb on + strand at 458.380 kb on - strand at 458.380 kb on - strand at 458.380 kb on - strand at 458.380 kb on - strand at 458.544 kb on + strand at 458.544 kb on + strand at 458.544 kb on + strand at 458.545 kb on - strand at 458.545 kb on - strand at 458.632 kb on - strand at 458.649 kb on + strand at 458.730 kb on + strand at 458.730 kb on + strand at 458.730 kb on + strand at 458.731 kb on - strand at 458.763 kb on + strand, within HGI48_RS02095 at 458.764 kb on - strand, within HGI48_RS02095 at 458.764 kb on - strand, within HGI48_RS02095 at 458.821 kb on + strand, within HGI48_RS02095 at 458.821 kb on + strand, within HGI48_RS02095 at 458.821 kb on + strand, within HGI48_RS02095 at 458.821 kb on + strand, within HGI48_RS02095 at 458.822 kb on - strand, within HGI48_RS02095 at 458.845 kb on - strand, within HGI48_RS02095 at 458.969 kb on - strand, within HGI48_RS02095 at 458.980 kb on - strand, within HGI48_RS02095 at 458.980 kb on - strand, within HGI48_RS02095 at 459.308 kb on - strand, within HGI48_RS02095 at 459.308 kb on - strand, within HGI48_RS02095 at 459.366 kb on + strand, within HGI48_RS02095 at 459.366 kb on + strand, within HGI48_RS02095 at 459.367 kb on - strand, within HGI48_RS02095 at 459.367 kb on - strand at 459.448 kb on + strand, within HGI48_RS02095 at 459.449 kb on - strand, within HGI48_RS02095 at 459.495 kb on - strand, within HGI48_RS02095 at 459.572 kb on + strand, within HGI48_RS02095 at 459.572 kb on + strand, within HGI48_RS02095 at 459.572 kb on + strand, within HGI48_RS02095 at 459.572 kb on + strand, within HGI48_RS02095 at 459.573 kb on - strand, within HGI48_RS02095 at 459.573 kb on - strand, within HGI48_RS02095 at 459.579 kb on + strand, within HGI48_RS02095 at 459.579 kb on + strand, within HGI48_RS02095 at 459.580 kb on - strand at 459.580 kb on - strand, within HGI48_RS02095 at 459.580 kb on - strand, within HGI48_RS02095 at 459.580 kb on - strand, within HGI48_RS02095 at 459.580 kb on - strand, within HGI48_RS02095 at 459.580 kb on - strand, within HGI48_RS02095 at 459.580 kb on - strand, within HGI48_RS02095 at 459.720 kb on + strand, within HGI48_RS02095 at 459.720 kb on + strand, within HGI48_RS02095 at 459.721 kb on - strand, within HGI48_RS02095 at 459.721 kb on - strand at 459.721 kb on - strand, within HGI48_RS02095 at 459.721 kb on - strand, within HGI48_RS02095 at 459.721 kb on - strand at 459.926 kb on + strand at 459.926 kb on + strand at 459.928 kb on + strand at 459.929 kb on - strand at 459.929 kb on - strand at 459.929 kb on - strand at 459.929 kb on - strand at 460.058 kb on + strand at 460.058 kb on + strand at 460.058 kb on + strand at 460.059 kb on - strand at 460.059 kb on - strand at 460.059 kb on - strand at 460.085 kb on + strand, within HGI48_RS02100 at 460.086 kb on - strand, within HGI48_RS02100 at 460.086 kb on - strand, within HGI48_RS02100 at 460.202 kb on + strand, within HGI48_RS02100 at 460.203 kb on - strand, within HGI48_RS02100 at 460.203 kb on - strand, within HGI48_RS02100 at 460.203 kb on - strand, within HGI48_RS02100 at 460.273 kb on + strand at 460.273 kb on + strand at 460.274 kb on - strand, within HGI48_RS02100 at 460.274 kb on - strand, within HGI48_RS02100 at 460.274 kb on - strand, within HGI48_RS02100 at 460.274 kb on - strand, within HGI48_RS02100 at 460.463 kb on - strand, within HGI48_RS02100 at 460.476 kb on + strand, within HGI48_RS02100 at 460.476 kb on + strand at 460.476 kb on + strand, within HGI48_RS02100 at 460.476 kb on + strand at 460.476 kb on + strand at 460.476 kb on + strand, within HGI48_RS02100 at 460.476 kb on + strand, within HGI48_RS02100 at 460.476 kb on + strand, within HGI48_RS02100 at 460.477 kb on - strand, within HGI48_RS02100 at 460.477 kb on - strand, within HGI48_RS02100 at 460.477 kb on - strand, within HGI48_RS02100 at 460.477 kb on - strand, within HGI48_RS02100 at 460.477 kb on - strand, within HGI48_RS02100 at 460.516 kb on + strand at 460.516 kb on + strand, within HGI48_RS02100 at 460.516 kb on + strand, within HGI48_RS02100 at 460.516 kb on + strand at 460.516 kb on + strand, within HGI48_RS02100 at 460.516 kb on + strand, within HGI48_RS02100 at 460.516 kb on + strand, within HGI48_RS02100 at 460.516 kb on + strand, within HGI48_RS02100 at 460.516 kb on + strand, within HGI48_RS02100 at 460.517 kb on - strand, within HGI48_RS02100 at 460.517 kb on - strand, within HGI48_RS02100 at 460.517 kb on - strand at 460.519 kb on + strand, within HGI48_RS02100 at 460.583 kb on - strand at 460.608 kb on + strand at 460.608 kb on + strand at 460.609 kb on - strand at 460.609 kb on - strand at 460.609 kb on - strand at 460.609 kb on - strand at 460.636 kb on - strand at 460.702 kb on + strand at 460.702 kb on + strand at 460.703 kb on - strand at 460.783 kb on + strand, within HGI48_RS02105 at 460.783 kb on + strand, within HGI48_RS02105 at 460.783 kb on + strand, within HGI48_RS02105 at 460.784 kb on - strand, within HGI48_RS02105 at 460.784 kb on - strand, within HGI48_RS02105 at 460.870 kb on + strand, within HGI48_RS02105 at 460.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 457,615 + +0.4 457,615 + -0.8 457,615 + -1.2 457,615 + +0.5 457,615 + -0.2 457,616 - -0.5 457,654 + +0.8 457,654 + HGI48_RS02090 0.12 +0.5 457,654 + HGI48_RS02090 0.12 -0.5 457,655 - HGI48_RS02090 0.13 -2.2 457,655 - HGI48_RS02090 0.13 -0.2 457,655 - HGI48_RS02090 0.13 -0.4 457,655 - HGI48_RS02090 0.13 -0.4 457,655 - HGI48_RS02090 0.13 -0.5 457,655 - HGI48_RS02090 0.13 -1.1 457,655 - HGI48_RS02090 0.13 -0.6 457,677 - HGI48_RS02090 0.15 +0.4 457,677 - HGI48_RS02090 0.15 +0.4 457,716 + -0.2 457,716 + HGI48_RS02090 0.20 -1.2 457,716 + HGI48_RS02090 0.20 +0.1 457,716 + HGI48_RS02090 0.20 +0.0 457,717 - HGI48_RS02090 0.21 +0.4 457,717 - HGI48_RS02090 0.21 -1.7 457,717 - +0.8 457,717 - HGI48_RS02090 0.21 +1.5 457,743 + HGI48_RS02090 0.24 +0.2 457,743 + HGI48_RS02090 0.24 +1.1 457,744 - HGI48_RS02090 0.24 -0.4 457,744 - HGI48_RS02090 0.24 +0.1 457,744 - HGI48_RS02090 0.24 -0.7 457,744 - HGI48_RS02090 0.24 -2.5 457,744 - HGI48_RS02090 0.24 -0.2 457,744 - HGI48_RS02090 0.24 +0.4 457,785 + +0.8 457,785 + HGI48_RS02090 0.29 -0.9 457,785 + HGI48_RS02090 0.29 -2.2 457,786 - HGI48_RS02090 0.29 -0.1 457,786 - HGI48_RS02090 0.29 -0.3 457,786 - HGI48_RS02090 0.29 -0.3 457,786 - HGI48_RS02090 0.29 -1.0 457,786 - +3.5 457,838 + HGI48_RS02090 0.36 -1.3 457,839 - -0.2 457,854 + HGI48_RS02090 0.38 -1.7 457,855 - HGI48_RS02090 0.38 +0.3 457,881 - HGI48_RS02090 0.42 +1.3 457,881 - +1.6 457,881 - HGI48_RS02090 0.42 -0.7 457,898 - HGI48_RS02090 0.44 -0.7 457,976 - +1.6 458,124 + HGI48_RS02090 0.73 -0.2 458,125 - HGI48_RS02090 0.73 +1.2 458,125 - HGI48_RS02090 0.73 -2.2 458,125 - HGI48_RS02090 0.73 -1.2 458,232 - HGI48_RS02090 0.87 -0.3 458,232 - HGI48_RS02090 0.87 -0.3 458,269 - -2.0 458,278 + -0.2 458,279 - +0.2 458,279 - -0.7 458,285 + -0.2 458,298 + -0.2 458,299 - +0.5 458,299 - -0.2 458,299 - +0.3 458,351 - +0.8 458,351 - +1.1 458,355 + -0.5 458,356 - +0.3 458,371 - -0.5 458,371 - +0.1 458,375 + -0.6 458,376 - +0.6 458,379 + +1.1 458,379 + -1.5 458,380 - -0.0 458,380 - -0.4 458,380 - -1.2 458,380 - -0.3 458,544 + +0.8 458,544 + -1.0 458,544 + +0.4 458,545 - +0.6 458,545 - -0.9 458,632 - +0.8 458,649 + -1.6 458,730 + +0.8 458,730 + +0.8 458,730 + +0.8 458,731 - +0.1 458,763 + HGI48_RS02095 0.12 +1.6 458,764 - HGI48_RS02095 0.12 +1.9 458,764 - HGI48_RS02095 0.12 +1.1 458,821 + HGI48_RS02095 0.16 -1.0 458,821 + HGI48_RS02095 0.16 +0.8 458,821 + HGI48_RS02095 0.16 -1.4 458,821 + HGI48_RS02095 0.16 -0.3 458,822 - HGI48_RS02095 0.17 -0.2 458,845 - HGI48_RS02095 0.18 -2.5 458,969 - HGI48_RS02095 0.28 -2.3 458,980 - HGI48_RS02095 0.28 +1.3 458,980 - HGI48_RS02095 0.28 -1.7 459,308 - HGI48_RS02095 0.53 -0.7 459,308 - HGI48_RS02095 0.53 -0.2 459,366 + HGI48_RS02095 0.57 +1.1 459,366 + HGI48_RS02095 0.57 +2.0 459,367 - HGI48_RS02095 0.58 +0.2 459,367 - +0.3 459,448 + HGI48_RS02095 0.64 +1.4 459,449 - HGI48_RS02095 0.64 -1.0 459,495 - HGI48_RS02095 0.67 -0.6 459,572 + HGI48_RS02095 0.73 -0.4 459,572 + HGI48_RS02095 0.73 -0.2 459,572 + HGI48_RS02095 0.73 +0.1 459,572 + HGI48_RS02095 0.73 +0.8 459,573 - HGI48_RS02095 0.73 -2.0 459,573 - HGI48_RS02095 0.73 +1.2 459,579 + HGI48_RS02095 0.74 -0.7 459,579 + HGI48_RS02095 0.74 +1.0 459,580 - +0.3 459,580 - HGI48_RS02095 0.74 -1.7 459,580 - HGI48_RS02095 0.74 -0.2 459,580 - HGI48_RS02095 0.74 +0.0 459,580 - HGI48_RS02095 0.74 -1.5 459,580 - HGI48_RS02095 0.74 -0.7 459,580 - HGI48_RS02095 0.74 +1.4 459,720 + HGI48_RS02095 0.84 -0.1 459,720 + HGI48_RS02095 0.84 +0.4 459,721 - HGI48_RS02095 0.84 +0.1 459,721 - +1.6 459,721 - HGI48_RS02095 0.84 -0.5 459,721 - HGI48_RS02095 0.84 -0.2 459,721 - -0.7 459,926 + -1.0 459,926 + -1.2 459,928 + -0.0 459,929 - +0.3 459,929 - -0.4 459,929 - -0.3 459,929 - -0.2 460,058 + +0.4 460,058 + +0.3 460,058 + +0.3 460,059 - +1.2 460,059 - -0.0 460,059 - -0.3 460,085 + HGI48_RS02100 0.14 +0.0 460,086 - HGI48_RS02100 0.14 -1.3 460,086 - HGI48_RS02100 0.14 -0.2 460,202 + HGI48_RS02100 0.33 -2.7 460,203 - HGI48_RS02100 0.33 +0.3 460,203 - HGI48_RS02100 0.33 -2.3 460,203 - HGI48_RS02100 0.33 -1.7 460,273 + +0.8 460,273 + -0.7 460,274 - HGI48_RS02100 0.44 +1.4 460,274 - HGI48_RS02100 0.44 -1.0 460,274 - HGI48_RS02100 0.44 -0.2 460,274 - HGI48_RS02100 0.44 -1.2 460,463 - HGI48_RS02100 0.75 +0.3 460,476 + HGI48_RS02100 0.77 -1.2 460,476 + +2.2 460,476 + HGI48_RS02100 0.77 +0.4 460,476 + +0.8 460,476 + +1.4 460,476 + HGI48_RS02100 0.77 -0.4 460,476 + HGI48_RS02100 0.77 -0.7 460,476 + HGI48_RS02100 0.77 -0.2 460,477 - HGI48_RS02100 0.77 +2.0 460,477 - HGI48_RS02100 0.77 -0.6 460,477 - HGI48_RS02100 0.77 +0.8 460,477 - HGI48_RS02100 0.77 -0.8 460,477 - HGI48_RS02100 0.77 -0.4 460,516 + +0.8 460,516 + HGI48_RS02100 0.83 +1.2 460,516 + HGI48_RS02100 0.83 +1.2 460,516 + -0.2 460,516 + HGI48_RS02100 0.83 -0.5 460,516 + HGI48_RS02100 0.83 -1.5 460,516 + HGI48_RS02100 0.83 -0.6 460,516 + HGI48_RS02100 0.83 -0.3 460,516 + HGI48_RS02100 0.83 +0.1 460,517 - HGI48_RS02100 0.84 -0.4 460,517 - HGI48_RS02100 0.84 -1.5 460,517 - -0.2 460,519 + HGI48_RS02100 0.84 -0.3 460,583 - -1.5 460,608 + -1.0 460,608 + +0.3 460,609 - -0.7 460,609 - -0.3 460,609 - -0.2 460,609 - -0.7 460,636 - +0.3 460,702 + -1.2 460,702 + -0.7 460,703 - -0.6 460,783 + HGI48_RS02105 0.14 -1.5 460,783 + HGI48_RS02105 0.14 +0.8 460,783 + HGI48_RS02105 0.14 +0.7 460,784 - HGI48_RS02105 0.15 -1.2 460,784 - HGI48_RS02105 0.15 -1.2 460,870 + HGI48_RS02105 0.22 -1.0 460,870 + +0.3
Or see this region's nucleotide sequence