Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotides HGI48_RS01595 and HGI48_RS01600 are separated by 37 nucleotides HGI48_RS01600 and HGI48_RS01605 overlap by 4 nucleotides HGI48_RS01605 and HGI48_RS01610 are separated by 59 nucleotides
HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731
_RS01590
HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332
_RS01595
HGI48_RS01600: HGI48_RS01600 - YraN family protein, at 353,370 to 353,726
_RS01600
HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756
_RS01605
HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685
_RS01610
Position (kb) 353
354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 352.807 kb on + strand, within HGI48_RS01595 at 352.808 kb on - strand, within HGI48_RS01595 at 352.808 kb on - strand, within HGI48_RS01595 at 352.808 kb on - strand at 353.037 kb on + strand, within HGI48_RS01595 at 353.037 kb on + strand, within HGI48_RS01595 at 353.095 kb on + strand, within HGI48_RS01595 at 353.096 kb on - strand, within HGI48_RS01595 at 353.182 kb on + strand, within HGI48_RS01595 at 353.182 kb on + strand, within HGI48_RS01595 at 353.254 kb on + strand, within HGI48_RS01595 at 353.255 kb on - strand, within HGI48_RS01595 at 353.317 kb on + strand at 353.317 kb on + strand at 353.430 kb on + strand, within HGI48_RS01600 at 353.431 kb on - strand, within HGI48_RS01600 at 353.526 kb on - strand, within HGI48_RS01600 at 353.528 kb on + strand, within HGI48_RS01600 at 353.529 kb on - strand, within HGI48_RS01600 at 353.529 kb on - strand, within HGI48_RS01600 at 353.606 kb on + strand, within HGI48_RS01600 at 353.607 kb on - strand, within HGI48_RS01600 at 353.773 kb on + strand at 353.773 kb on + strand at 353.774 kb on - strand at 353.803 kb on + strand at 353.803 kb on + strand at 353.804 kb on - strand at 353.903 kb on + strand at 353.904 kb on - strand at 354.039 kb on + strand, within HGI48_RS01605 at 354.057 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.140 kb on - strand at 354.140 kb on - strand, within HGI48_RS01605 at 354.140 kb on - strand, within HGI48_RS01605 at 354.140 kb on - strand, within HGI48_RS01605 at 354.140 kb on - strand at 354.141 kb on + strand at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.221 kb on - strand, within HGI48_RS01605 at 354.254 kb on - strand, within HGI48_RS01605 at 354.293 kb on - strand, within HGI48_RS01605 at 354.437 kb on - strand, within HGI48_RS01605 at 354.488 kb on + strand, within HGI48_RS01605 at 354.499 kb on - strand, within HGI48_RS01605 at 354.499 kb on - strand, within HGI48_RS01605 at 354.499 kb on - strand, within HGI48_RS01605 at 354.653 kb on - strand at 354.653 kb on - strand, within HGI48_RS01605 at 354.667 kb on + strand, within HGI48_RS01605 at 354.678 kb on + strand, within HGI48_RS01605 at 354.715 kb on + strand, within HGI48_RS01605 at 355.076 kb on + strand, within HGI48_RS01605 at 355.076 kb on + strand, within HGI48_RS01605 at 355.279 kb on - strand at 355.335 kb on + strand, within HGI48_RS01605 at 355.335 kb on + strand, within HGI48_RS01605 at 355.336 kb on - strand, within HGI48_RS01605 at 355.550 kb on + strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.570 kb on + strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.602 kb on + strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.606 kb on - strand at 355.606 kb on - strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.756 kb on + strand at 355.756 kb on + strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.762 kb on - strand at 355.762 kb on - strand at 355.777 kb on - strand at 355.777 kb on - strand at 355.789 kb on + strand at 355.789 kb on + strand at 355.790 kb on - strand at 355.790 kb on - strand at 355.792 kb on + strand at 355.793 kb on - strand at 355.858 kb on + strand at 355.858 kb on + strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.876 kb on - strand at 355.935 kb on + strand, within HGI48_RS01610 at 355.935 kb on + strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.959 kb on + strand, within HGI48_RS01610 at 355.960 kb on - strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand at 355.989 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.237 kb on - strand at 356.237 kb on - strand, within HGI48_RS01610 at 356.256 kb on + strand, within HGI48_RS01610 at 356.277 kb on + strand, within HGI48_RS01610 at 356.278 kb on - strand at 356.321 kb on - strand, within HGI48_RS01610 at 356.346 kb on + strand, within HGI48_RS01610 at 356.346 kb on + strand at 356.347 kb on - strand, within HGI48_RS01610 at 356.386 kb on + strand at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.432 kb on - strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.647 kb on + strand at 356.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 352,807 + HGI48_RS01595 0.11 +1.4 352,808 - HGI48_RS01595 0.11 -0.1 352,808 - HGI48_RS01595 0.11 -1.1 352,808 - +1.3 353,037 + HGI48_RS01595 0.50 +0.9 353,037 + HGI48_RS01595 0.50 -0.4 353,095 + HGI48_RS01595 0.60 -0.1 353,096 - HGI48_RS01595 0.60 +0.0 353,182 + HGI48_RS01595 0.74 -1.4 353,182 + HGI48_RS01595 0.74 -1.7 353,254 + HGI48_RS01595 0.87 +1.1 353,255 - HGI48_RS01595 0.87 +0.6 353,317 + +0.6 353,317 + +0.5 353,430 + HGI48_RS01600 0.17 -0.4 353,431 - HGI48_RS01600 0.17 +0.6 353,526 - HGI48_RS01600 0.44 -2.1 353,528 + HGI48_RS01600 0.44 -0.1 353,529 - HGI48_RS01600 0.45 -0.1 353,529 - HGI48_RS01600 0.45 -0.3 353,606 + HGI48_RS01600 0.66 -0.3 353,607 - HGI48_RS01600 0.66 -2.3 353,773 + -0.5 353,773 + -0.3 353,774 - -0.1 353,803 + -1.4 353,803 + -0.4 353,804 - -0.4 353,903 + -0.7 353,904 - -0.4 354,039 + HGI48_RS01605 0.16 +0.2 354,057 + HGI48_RS01605 0.16 +1.2 354,139 + HGI48_RS01605 0.20 -0.1 354,139 + HGI48_RS01605 0.20 -1.1 354,139 + HGI48_RS01605 0.20 -0.7 354,139 + HGI48_RS01605 0.20 -0.9 354,139 + HGI48_RS01605 0.20 +1.8 354,139 + HGI48_RS01605 0.20 -0.1 354,140 - -0.7 354,140 - HGI48_RS01605 0.21 -3.6 354,140 - HGI48_RS01605 0.21 +0.3 354,140 - HGI48_RS01605 0.21 +0.9 354,140 - +0.9 354,141 + +0.9 354,141 + HGI48_RS01605 0.21 +0.7 354,141 + HGI48_RS01605 0.21 -1.4 354,141 + HGI48_RS01605 0.21 -0.1 354,141 + HGI48_RS01605 0.21 -0.3 354,141 + HGI48_RS01605 0.21 -0.2 354,141 + HGI48_RS01605 0.21 -0.1 354,141 + HGI48_RS01605 0.21 -0.2 354,141 + HGI48_RS01605 0.21 -0.4 354,142 - HGI48_RS01605 0.21 -0.7 354,142 - HGI48_RS01605 0.21 -0.7 354,142 - HGI48_RS01605 0.21 +1.6 354,142 - HGI48_RS01605 0.21 +0.9 354,142 - HGI48_RS01605 0.21 -1.7 354,142 - HGI48_RS01605 0.21 -0.5 354,221 - HGI48_RS01605 0.24 -0.4 354,254 - HGI48_RS01605 0.26 -1.4 354,293 - HGI48_RS01605 0.28 -1.6 354,437 - HGI48_RS01605 0.35 -1.9 354,488 + HGI48_RS01605 0.38 -0.3 354,499 - HGI48_RS01605 0.38 -1.0 354,499 - HGI48_RS01605 0.38 -0.5 354,499 - HGI48_RS01605 0.38 +0.0 354,653 - +0.3 354,653 - HGI48_RS01605 0.46 +0.7 354,667 + HGI48_RS01605 0.46 +1.2 354,678 + HGI48_RS01605 0.47 +0.8 354,715 + HGI48_RS01605 0.49 -0.3 355,076 + HGI48_RS01605 0.67 -0.8 355,076 + HGI48_RS01605 0.67 -1.1 355,279 - -0.1 355,335 + HGI48_RS01605 0.79 -0.6 355,335 + HGI48_RS01605 0.79 -0.4 355,336 - HGI48_RS01605 0.79 -0.7 355,550 + HGI48_RS01605 0.90 +0.7 355,551 - HGI48_RS01605 0.90 +0.6 355,551 - HGI48_RS01605 0.90 -0.1 355,551 - HGI48_RS01605 0.90 -1.0 355,570 + -1.3 355,571 - -0.7 355,571 - +0.3 355,571 - -1.9 355,602 + -1.4 355,603 - +0.2 355,603 - +0.2 355,603 - +0.2 355,603 - -2.7 355,603 - +0.3 355,605 + +0.9 355,605 + -0.1 355,605 + -0.3 355,606 - +0.6 355,606 - +0.3 355,634 + -1.7 355,634 + +0.9 355,634 + -1.3 355,635 - +1.7 355,635 - -0.3 355,635 - +0.6 355,635 - +0.6 355,635 - +0.3 355,756 + -0.4 355,756 + +1.4 355,757 - +0.9 355,757 - -0.3 355,757 - +0.3 355,757 - +0.9 355,757 - +0.6 355,757 - -1.7 355,757 - +0.8 355,757 - -0.3 355,757 - -0.1 355,757 - +0.5 355,757 - -0.8 355,757 - +1.5 355,757 - +0.2 355,762 - -1.1 355,762 - -0.4 355,777 - +0.3 355,777 - -0.4 355,789 + +0.2 355,789 + +0.6 355,790 - -1.4 355,790 - -0.9 355,792 + -1.7 355,793 - -1.2 355,858 + +0.9 355,858 + +1.6 355,859 - +0.3 355,859 - +0.1 355,859 - -0.8 355,859 - -0.4 355,859 - +0.6 355,859 - -0.7 355,859 - -0.4 355,859 - -0.4 355,859 - -1.8 355,859 - -0.7 355,859 - +0.5 355,859 - +1.5 355,876 - -0.1 355,935 + HGI48_RS01610 0.14 +1.6 355,935 + HGI48_RS01610 0.14 +1.0 355,936 - HGI48_RS01610 0.14 -2.3 355,936 - HGI48_RS01610 0.14 -0.7 355,951 - HGI48_RS01610 0.16 +0.1 355,951 - HGI48_RS01610 0.16 -0.4 355,959 + HGI48_RS01610 0.16 +0.7 355,960 - HGI48_RS01610 0.17 +0.5 355,967 + HGI48_RS01610 0.17 +1.5 355,967 + HGI48_RS01610 0.17 +0.4 355,967 + HGI48_RS01610 0.17 -0.9 355,967 + HGI48_RS01610 0.17 -0.4 355,968 - HGI48_RS01610 0.17 -0.9 355,968 - HGI48_RS01610 0.17 -1.2 355,968 - HGI48_RS01610 0.17 -0.4 355,968 - HGI48_RS01610 0.17 -0.5 355,968 - HGI48_RS01610 0.17 +0.9 355,973 + HGI48_RS01610 0.18 +0.3 355,973 + HGI48_RS01610 0.18 -2.1 355,973 + +1.9 355,989 + HGI48_RS01610 0.20 -0.3 356,122 + HGI48_RS01610 0.35 -0.4 356,122 + -0.1 356,236 + HGI48_RS01610 0.48 -0.8 356,236 + HGI48_RS01610 0.48 +0.4 356,236 + HGI48_RS01610 0.48 -1.4 356,237 - +1.3 356,237 - HGI48_RS01610 0.48 -1.4 356,256 + HGI48_RS01610 0.51 -0.8 356,277 + HGI48_RS01610 0.53 -0.6 356,278 - +1.3 356,321 - HGI48_RS01610 0.58 +1.4 356,346 + HGI48_RS01610 0.61 -0.8 356,346 + +0.9 356,347 - HGI48_RS01610 0.61 -0.7 356,386 + +0.9 356,386 + HGI48_RS01610 0.66 +0.9 356,386 + HGI48_RS01610 0.66 +0.7 356,386 + HGI48_RS01610 0.66 -0.4 356,386 + HGI48_RS01610 0.66 +0.0 356,432 - HGI48_RS01610 0.71 -0.0 356,559 + HGI48_RS01610 0.85 +0.9 356,559 + HGI48_RS01610 0.85 +2.9 356,559 + HGI48_RS01610 0.85 -0.5 356,559 + HGI48_RS01610 0.85 -0.1 356,559 + HGI48_RS01610 0.85 +1.3 356,559 + HGI48_RS01610 0.85 -0.5 356,559 + HGI48_RS01610 0.85 +0.3 356,560 - HGI48_RS01610 0.86 -2.3 356,560 - HGI48_RS01610 0.86 -0.7 356,560 - HGI48_RS01610 0.86 -0.9 356,560 - HGI48_RS01610 0.86 -1.4 356,560 - HGI48_RS01610 0.86 -0.1 356,560 - HGI48_RS01610 0.86 +0.1 356,560 - HGI48_RS01610 0.86 -1.7 356,560 - HGI48_RS01610 0.86 +0.6 356,647 + -0.1 356,683 + -0.3
Or see this region's nucleotide sequence