Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20460

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,573,564	+		HGI48_RS20450	0.89	+2.2
4,573,564	+		HGI48_RS20450	0.89	-0.7
4,573,564	+		HGI48_RS20450	0.89	-0.1
4,573,578	-				-0.2
4,573,692	+				-1.7
4,573,693	-				-1.0
4,573,701	+				+0.5
4,573,701	+				-0.3
4,573,701	+				+3.3
4,573,701	+				+0.3
4,573,702	-				-0.2
4,573,766	-				+0.4
4,573,766	-				-1.3
4,573,766	-				+0.0
4,573,766	-				+0.8
4,573,766	-				-0.6
4,573,766	-				+1.7
4,573,772	-				+0.7
4,573,772	-				+0.0
4,573,832	-		HGI48_RS20455	0.15	+0.0
4,573,856	-		HGI48_RS20455	0.20	-0.4
4,573,867	-		HGI48_RS20455	0.22	+0.7
4,574,180	-		HGI48_RS20455	0.81	-2.5
4,574,180	-		HGI48_RS20455	0.81	+0.0
4,574,213	+		HGI48_RS20455	0.87	+0.4
4,574,214	-		HGI48_RS20455	0.87	-1.3
4,574,225	+		HGI48_RS20455	0.89	-1.0
4,574,235	+				+0.6
4,574,235	+				+0.5
4,574,235	+				+1.3
4,574,236	-				-0.5
4,574,236	-				-0.5
4,574,236	-				-0.1
4,574,236	-				+0.3
4,574,266	+				+0.4
4,574,280	+				+0.7
4,574,291	+				-0.2
4,574,291	+				-0.5
4,574,292	-				-1.1
4,574,292	-				+0.4
4,574,292	-				-1.0
4,574,292	-				+1.5
4,574,318	-				-1.6
4,574,318	-				-0.2
4,574,318	-				+1.0
4,574,333	+				+1.0
4,574,333	+				-0.3
4,574,333	+				-0.3
4,574,333	+				-1.5
4,574,333	+				+0.7
4,574,334	-				-2.0
4,574,334	-				-0.3
4,574,334	-				+0.8
4,574,334	-				+0.5
4,574,334	-				+0.7
4,574,337	+				+0.3
4,574,337	+				-0.6
4,574,337	+				+0.0
4,574,337	+				-0.6
4,574,337	+				+0.4
4,574,337	+				+0.0
4,574,337	+				+3.7
4,574,337	+				+0.6
4,574,337	+				+1.0
4,574,338	-				-2.0
4,574,338	-				+2.3
4,574,338	-				-2.3
4,574,338	-				+1.7
4,574,338	-				+1.6
4,574,338	-				-0.6
4,574,562	+				+1.4
4,574,801	+		HGI48_RS20460	0.38	-1.6
4,574,962	+		HGI48_RS20460	0.50	-1.8
4,574,962	+		HGI48_RS20460	0.50	+0.4
4,575,008	+		HGI48_RS20460	0.54	-0.7
4,575,008	+		HGI48_RS20460	0.54	+0.0
4,575,009	-		HGI48_RS20460	0.54	+1.2
4,575,155	+		HGI48_RS20460	0.65	-1.3
4,575,317	+		HGI48_RS20460	0.77	-0.4
4,575,317	+		HGI48_RS20460	0.77	-0.6
4,575,317	+		HGI48_RS20460	0.77	+0.2
4,575,318	-		HGI48_RS20460	0.77	-0.1
4,575,318	-		HGI48_RS20460	0.77	+0.8
4,575,318	-		HGI48_RS20460	0.77	+0.3
4,575,479	+		HGI48_RS20460	0.89	-1.6
4,575,479	+		HGI48_RS20460	0.89	-2.2
4,575,480	-		HGI48_RS20460	0.89	+1.7
4,575,480	-		HGI48_RS20460	0.89	-0.6
4,575,508	+				-0.7
4,575,508	+				-0.7
4,575,508	+				-1.6
4,575,509	-				-0.5
4,575,509	-				-0.3
4,575,561	+				+1.3
4,575,562	-				+0.4
4,575,562	-				-1.8
4,575,562	-				-0.3
4,575,562	-				+0.7
4,575,562	-				+0.8
4,575,587	-				+0.6
4,575,589	+				-1.3
4,575,590	-				-1.0
4,575,590	-				+0.8
4,575,590	-				+0.0
4,575,615	-				-0.8
4,575,619	+				-1.6
4,575,619	+				-0.2
4,575,620	-				+0.1
4,575,620	-				-0.8
4,575,620	-				+0.6
4,575,621	+				-0.6
4,575,621	+				-0.3
4,575,621	+				+0.8
4,575,628	+				+0.7
4,575,689	-				-0.9
4,575,744	+				+1.8
4,575,744	+				+0.0
4,575,779	+				-0.2
4,575,779	+				+1.6
4,575,780	-				-2.0
4,575,789	+				-0.4
4,575,790	-				-1.0
4,575,795	+				-0.8
4,575,795	+				+0.4
4,575,795	+				-0.5
4,575,795	+				+0.5
4,575,795	+				-1.0
4,575,795	+				-0.4
4,575,795	+				-1.8
4,575,795	+				-0.6
4,575,795	+				-0.4
4,575,796	-				-1.3
4,575,812	-				-1.8
4,575,812	-				-0.6
4,575,828	-				+0.7
4,575,828	-				+0.0
4,575,828	-				+1.3
4,575,828	-				-1.0
4,575,838	-				-2.5
4,575,838	-				-0.3
4,575,838	-				-0.7
4,575,844	-				-0.5
4,575,844	-				-1.0
4,575,844	-				-0.9
4,575,844	-				+0.3
4,575,844	-				-1.2
4,575,844	-				+1.4
4,575,844	-				-0.6
4,575,844	-				-1.5
4,575,844	-				-0.9
4,575,859	+				-1.3
4,575,891	+				+0.3
4,575,898	+				+1.8
4,575,898	+				+1.0
4,575,899	-				-0.7
4,575,901	+				+0.5
4,575,958	+				-0.9
4,575,958	+				-1.3
4,575,959	-				-0.2
4,575,959	-				-0.3
4,575,959	-				-0.7
4,575,959	-				-1.3
4,575,959	-				+1.8
4,575,959	-				-1.8
4,576,067	-		HGI48_RS20465	0.14	+0.6
4,576,067	-		HGI48_RS20465	0.14	-0.2
4,576,227	+		HGI48_RS20465	0.31	-0.4
4,576,227	+		HGI48_RS20465	0.31	+1.4
4,576,227	+		HGI48_RS20465	0.31	-1.6
4,576,227	+		HGI48_RS20465	0.31	-0.7
4,576,228	-		HGI48_RS20465	0.31	+0.0
4,576,231	+		HGI48_RS20465	0.32	-1.8
4,576,231	+		HGI48_RS20465	0.32	-0.7
4,576,231	+		HGI48_RS20465	0.32	-2.1
4,576,232	-		HGI48_RS20465	0.32	-1.0
4,576,232	-				+1.0
4,576,360	+		HGI48_RS20465	0.46	+0.5
4,576,361	-		HGI48_RS20465	0.46	-1.0
4,576,361	-		HGI48_RS20465	0.46	-2.4
4,576,361	-		HGI48_RS20465	0.46	-2.0
4,576,364	+		HGI48_RS20465	0.46	-1.3
4,576,364	+		HGI48_RS20465	0.46	+0.6
4,576,364	+		HGI48_RS20465	0.46	+0.0
4,576,365	-		HGI48_RS20465	0.46	-1.6
4,576,365	-		HGI48_RS20465	0.46	-0.8
4,576,365	-		HGI48_RS20465	0.46	-2.9
4,576,365	-		HGI48_RS20465	0.46	-1.7
4,576,365	-		HGI48_RS20465	0.46	-1.8
4,576,366	+		HGI48_RS20465	0.46	-1.2
4,576,366	+		HGI48_RS20465	0.46	-0.3
4,576,366	+		HGI48_RS20465	0.46	-2.3
4,576,367	-				+0.0
4,576,367	-		HGI48_RS20465	0.46	-1.6
4,576,367	-		HGI48_RS20465	0.46	-2.6
4,576,379	-		HGI48_RS20465	0.48	-0.3
4,576,391	+				+1.4
4,576,391	+		HGI48_RS20465	0.49	-0.3
4,576,391	+		HGI48_RS20465	0.49	-1.6
4,576,391	+		HGI48_RS20465	0.49	-1.0
4,576,391	+		HGI48_RS20465	0.49	-2.8
4,576,391	+		HGI48_RS20465	0.49	-1.0
4,576,391	+		HGI48_RS20465	0.49	-1.3
4,576,392	-		HGI48_RS20465	0.49	-1.0
4,576,392	-		HGI48_RS20465	0.49	-0.7
4,576,392	-		HGI48_RS20465	0.49	-2.2
4,576,393	+		HGI48_RS20465	0.49	-1.6
4,576,454	+		HGI48_RS20465	0.56	-1.0
4,576,454	+		HGI48_RS20465	0.56	+3.6
4,576,455	-		HGI48_RS20465	0.56	-1.2
4,576,455	-		HGI48_RS20465	0.56	-1.2
4,576,455	-		HGI48_RS20465	0.56	+0.1
4,576,457	+		HGI48_RS20465	0.56	-1.4
4,576,458	-		HGI48_RS20465	0.56	-1.0
4,576,458	-		HGI48_RS20465	0.56	-1.3