Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19855

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,437,811	+		HGI48_RS19850	0.57	-1.4
4,437,812	-		HGI48_RS19850	0.57	-0.7
4,437,812	-				+1.0
4,437,812	-		HGI48_RS19850	0.57	-1.3
4,437,814	+		HGI48_RS19850	0.57	-0.3
4,437,815	-		HGI48_RS19850	0.57	-0.6
4,437,815	-		HGI48_RS19850	0.57	+0.2
4,438,009	+		HGI48_RS19850	0.67	-0.4
4,438,009	+		HGI48_RS19850	0.67	+0.2
4,438,010	-		HGI48_RS19850	0.67	-0.0
4,438,010	-		HGI48_RS19850	0.67	-2.0
4,438,111	+		HGI48_RS19850	0.72	-1.5
4,438,111	+		HGI48_RS19850	0.72	-2.0
4,438,112	-		HGI48_RS19850	0.72	-1.8
4,438,112	-		HGI48_RS19850	0.72	+0.2
4,438,144	+		HGI48_RS19850	0.73	+1.4
4,438,145	-				+0.4
4,438,211	-				+1.6
4,438,211	-		HGI48_RS19850	0.77	-1.0
4,438,211	-		HGI48_RS19850	0.77	-0.2
4,438,211	-		HGI48_RS19850	0.77	-0.5
4,438,211	-		HGI48_RS19850	0.77	-0.6
4,438,264	+		HGI48_RS19850	0.80	+1.0
4,438,264	+		HGI48_RS19850	0.80	-0.4
4,438,265	-		HGI48_RS19850	0.80	-1.2
4,438,341	+		HGI48_RS19850	0.83	-0.4
4,438,403	+		HGI48_RS19850	0.87	-1.3
4,438,403	+		HGI48_RS19850	0.87	-2.2
4,438,404	-				+1.0
4,438,404	-		HGI48_RS19850	0.87	-0.2
4,438,559	+				+1.0
4,438,632	+				-1.0
4,438,686	+				+0.5
4,438,686	+				+3.1
4,438,686	+				-0.0
4,438,686	+				-1.6
4,438,686	+				-0.0
4,438,687	-				-1.0
4,438,687	-				+0.1
4,438,687	-				-0.2
4,438,758	+				-0.8
4,438,758	+				+0.5
4,438,758	+				+1.4
4,438,758	+				-1.8
4,438,758	+				-1.6
4,438,758	+				-1.3
4,438,759	-				-1.2
4,438,759	-				-0.2
4,438,759	-				+0.2
4,438,771	+				-0.2
4,438,772	-				-0.0
4,438,817	+				+1.0
4,438,818	-				+1.0
4,438,879	+				-2.1
4,438,990	-		HGI48_RS19855	0.15	-0.2
4,439,001	+		HGI48_RS19855	0.15	-3.0
4,439,022	+		HGI48_RS19855	0.16	-1.8
4,439,193	+		HGI48_RS19855	0.24	-1.4
4,439,193	+				-0.6
4,439,193	+		HGI48_RS19855	0.24	-0.0
4,439,239	+		HGI48_RS19855	0.26	-1.8
4,439,240	-		HGI48_RS19855	0.26	-2.0
4,439,307	+				+1.0
4,439,307	+		HGI48_RS19855	0.29	+1.3
4,439,308	-		HGI48_RS19855	0.29	-0.0
4,439,313	+		HGI48_RS19855	0.30	-1.2
4,439,313	+		HGI48_RS19855	0.30	-0.6
4,439,313	+		HGI48_RS19855	0.30	-0.8
4,439,313	+		HGI48_RS19855	0.30	-0.7
4,439,313	+		HGI48_RS19855	0.30	-2.3
4,439,313	+		HGI48_RS19855	0.30	-0.2
4,439,313	+		HGI48_RS19855	0.30	-0.0
4,439,314	-				-0.6
4,439,314	-		HGI48_RS19855	0.30	-0.3
4,439,314	-		HGI48_RS19855	0.30	+0.1
4,439,314	-		HGI48_RS19855	0.30	-1.0
4,439,347	-		HGI48_RS19855	0.31	-2.2
4,439,350	+		HGI48_RS19855	0.31	+0.5
4,439,350	+		HGI48_RS19855	0.31	-1.8
4,439,350	+		HGI48_RS19855	0.31	-1.6
4,439,350	+		HGI48_RS19855	0.31	-0.6
4,439,351	-		HGI48_RS19855	0.31	-1.0
4,439,351	-		HGI48_RS19855	0.31	-2.0
4,439,351	-		HGI48_RS19855	0.31	-1.6
4,439,374	+		HGI48_RS19855	0.32	-0.0
4,439,374	+		HGI48_RS19855	0.32	-1.3
4,439,374	+		HGI48_RS19855	0.32	-0.3
4,439,374	+		HGI48_RS19855	0.32	+1.0
4,439,375	-		HGI48_RS19855	0.32	-0.3
4,439,375	-		HGI48_RS19855	0.32	-0.0
4,439,376	+		HGI48_RS19855	0.32	-1.0
4,439,376	+		HGI48_RS19855	0.32	-0.0
4,439,376	+				-0.6
4,439,376	+		HGI48_RS19855	0.32	-1.8
4,439,376	+		HGI48_RS19855	0.32	+1.4
4,439,376	+		HGI48_RS19855	0.32	-1.0
4,439,376	+		HGI48_RS19855	0.32	-0.4
4,439,377	-		HGI48_RS19855	0.33	-1.8
4,439,377	-		HGI48_RS19855	0.33	-0.6
4,439,377	-		HGI48_RS19855	0.33	-1.9
4,439,415	+		HGI48_RS19855	0.34	-1.3
4,439,415	+		HGI48_RS19855	0.34	-0.9
4,439,415	+		HGI48_RS19855	0.34	-0.9
4,439,415	+		HGI48_RS19855	0.34	-0.1
4,439,416	-		HGI48_RS19855	0.34	-1.3
4,439,529	+				+1.0
4,439,530	-		HGI48_RS19855	0.40	-2.0
4,439,530	-		HGI48_RS19855	0.40	-1.3
4,439,572	-		HGI48_RS19855	0.41	-0.3
4,439,574	+				+0.4
4,439,574	+		HGI48_RS19855	0.42	-1.0
4,439,574	+		HGI48_RS19855	0.42	-0.6
4,439,575	-		HGI48_RS19855	0.42	-1.3
4,439,575	-		HGI48_RS19855	0.42	-1.0
4,439,608	-		HGI48_RS19855	0.43	+0.3
4,439,676	+		HGI48_RS19855	0.46	-2.0
4,439,676	+		HGI48_RS19855	0.46	-2.3
4,439,677	-		HGI48_RS19855	0.46	-1.8
4,439,677	-		HGI48_RS19855	0.46	+1.0
4,439,677	-		HGI48_RS19855	0.46	+1.5
4,439,697	+		HGI48_RS19855	0.47	+0.7
4,439,728	-		HGI48_RS19855	0.49	-1.6
4,439,728	-		HGI48_RS19855	0.49	+1.6
4,439,754	+		HGI48_RS19855	0.50	-0.8
4,439,775	+		HGI48_RS19855	0.51	-3.8
4,439,782	-		HGI48_RS19855	0.51	-1.8
4,439,814	+		HGI48_RS19855	0.53	-2.2
4,439,892	+		HGI48_RS19855	0.56	-0.0
4,439,934	+		HGI48_RS19855	0.58	-1.9
4,439,934	+		HGI48_RS19855	0.58	-0.6
4,439,934	+		HGI48_RS19855	0.58	+0.4
4,439,934	+		HGI48_RS19855	0.58	-0.9
4,439,935	-		HGI48_RS19855	0.58	-0.3
4,439,935	-		HGI48_RS19855	0.58	-1.5
4,439,935	-		HGI48_RS19855	0.58	+0.6
4,439,937	-		HGI48_RS19855	0.58	-1.8
4,439,952	+		HGI48_RS19855	0.59	-0.3
4,440,027	+		HGI48_RS19855	0.62	-1.6
4,440,028	-		HGI48_RS19855	0.62	-1.8
4,440,107	+		HGI48_RS19855	0.66	-1.6
4,440,107	+		HGI48_RS19855	0.66	+0.5
4,440,107	+		HGI48_RS19855	0.66	-1.0
4,440,108	-		HGI48_RS19855	0.66	-1.7
4,440,114	+				+2.3
4,440,114	+		HGI48_RS19855	0.66	-1.8
4,440,114	+		HGI48_RS19855	0.66	-0.9
4,440,115	-		HGI48_RS19855	0.66	+0.6
4,440,115	-				-0.6
4,440,115	-		HGI48_RS19855	0.66	-1.3
4,440,115	-		HGI48_RS19855	0.66	-1.3
4,440,134	+		HGI48_RS19855	0.67	-0.3
4,440,134	+				+1.0
4,440,134	+		HGI48_RS19855	0.67	-1.3
4,440,134	+		HGI48_RS19855	0.67	-0.8
4,440,134	+		HGI48_RS19855	0.67	-1.5
4,440,135	-		HGI48_RS19855	0.67	+0.3
4,440,135	-		HGI48_RS19855	0.67	-0.4
4,440,135	-		HGI48_RS19855	0.67	-0.0
4,440,234	+		HGI48_RS19855	0.72	-1.0
4,440,234	+		HGI48_RS19855	0.72	-0.0
4,440,235	-		HGI48_RS19855	0.72	-1.8
4,440,235	-		HGI48_RS19855	0.72	+0.7
4,440,235	-				+0.4
4,440,288	+		HGI48_RS19855	0.74	-1.6
4,440,288	+		HGI48_RS19855	0.74	-1.6
4,440,288	+		HGI48_RS19855	0.74	-1.3
4,440,289	-		HGI48_RS19855	0.74	-2.2
4,440,289	-		HGI48_RS19855	0.74	-2.2
4,440,289	-		HGI48_RS19855	0.74	-1.0
4,440,289	-		HGI48_RS19855	0.74	-0.3
4,440,289	-		HGI48_RS19855	0.74	-0.9
4,440,578	-		HGI48_RS19855	0.88	+1.3
4,440,685	+				-0.5
4,440,685	+				-1.0
4,440,685	+				-1.6
4,440,685	+				-1.6
4,440,685	+				-0.8
4,440,686	-				-0.5
4,440,713	+				-1.6
4,440,713	+				-1.6
4,440,714	-				-0.6
4,440,772	+				-0.6
4,440,799	-				-1.3
4,440,820	+				-1.8
4,440,820	+				-1.3
4,440,821	-				-1.3
4,440,821	-				-0.0
4,440,821	-				+0.6
4,440,821	-				-1.4
4,440,823	+				+4.0
4,440,881	+				-0.3
4,440,881	+				-0.6
4,440,896	-				-0.2
4,440,925	+				-1.3
4,440,928	+				-0.6
4,440,928	+				-0.3
4,440,928	+				+1.0
4,440,929	-				-0.4
4,440,929	-				+0.3
4,440,931	+				-0.7
4,440,931	+				+0.5
4,440,932	-				+1.0
4,440,932	-				-0.2
4,440,953	-				-0.7
4,440,991	+				-2.2
4,441,014	+				+0.4
4,441,014	+				-0.9
4,441,027	+				-0.6
4,441,028	-				-0.7
4,441,045	-				-1.3
4,441,076	-				+0.6
4,441,112	+				+1.6
4,441,112	+				-1.1
4,441,129	-				-1.6
4,441,134	+				-0.2
4,441,220	-				-0.9
4,441,225	-				-0.3
4,441,271	+				-1.0
4,441,271	+				-0.6
4,441,272	-				-1.6
4,441,272	-				-0.1
4,441,286	+				-0.3
4,441,286	+				+0.3
4,441,286	+				+1.6
4,441,286	+				+3.1
4,441,286	+				+1.3
4,441,286	+				-2.5
4,441,287	-				-0.3
4,441,287	-				-0.0
4,441,333	+				+1.0
4,441,333	+				-1.8
4,441,334	-				-1.6
4,441,349	-				+1.1
4,441,361	+				+0.2
4,441,362	-				+3.7
4,441,397	+		HGI48_RS19860	0.10	-0.4
4,441,398	-		HGI48_RS19860	0.10	-1.2
4,441,398	-		HGI48_RS19860	0.10	-0.2
4,441,411	+				+1.0
4,441,411	+		HGI48_RS19860	0.11	-2.1
4,441,412	-		HGI48_RS19860	0.11	-0.1
4,441,412	-		HGI48_RS19860	0.11	-1.0
4,441,412	-		HGI48_RS19860	0.11	-1.0
4,441,601	+		HGI48_RS19860	0.22	-1.2
4,441,602	-		HGI48_RS19860	0.23	+0.5
4,441,602	-		HGI48_RS19860	0.23	+0.7
4,441,602	-		HGI48_RS19860	0.23	+0.4
4,441,832	+		HGI48_RS19860	0.36	+1.5
4,441,832	+		HGI48_RS19860	0.36	-1.0
4,441,833	-				-0.6
4,441,833	-		HGI48_RS19860	0.36	+0.8
4,441,833	-				-0.0
4,441,833	-				-0.0
4,441,833	-		HGI48_RS19860	0.36	+0.1