Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19840

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,432,993	+		HGI48_RS19835	0.62	-0.0
4,433,056	+		HGI48_RS19835	0.65	-1.6
4,433,056	+		HGI48_RS19835	0.65	-1.6
4,433,057	-		HGI48_RS19835	0.65	+0.1
4,433,057	-		HGI48_RS19835	0.65	+0.3
4,433,057	-		HGI48_RS19835	0.65	-2.5
4,433,090	-		HGI48_RS19835	0.66	-0.2
4,433,090	-		HGI48_RS19835	0.66	-0.3
4,433,107	+		HGI48_RS19835	0.67	-0.7
4,433,141	+		HGI48_RS19835	0.68	-0.0
4,433,142	-		HGI48_RS19835	0.68	-0.5
4,433,161	+		HGI48_RS19835	0.69	-0.6
4,433,161	+		HGI48_RS19835	0.69	-1.3
4,433,270	-		HGI48_RS19835	0.74	+0.7
4,433,313	-				-0.6
4,433,313	-		HGI48_RS19835	0.75	-1.4
4,433,313	-		HGI48_RS19835	0.75	+0.5
4,433,313	-		HGI48_RS19835	0.75	-2.2
4,433,330	+		HGI48_RS19835	0.76	-0.3
4,433,330	+		HGI48_RS19835	0.76	-2.0
4,433,330	+		HGI48_RS19835	0.76	+0.6
4,433,330	+		HGI48_RS19835	0.76	-2.2
4,433,330	+		HGI48_RS19835	0.76	+0.6
4,433,330	+		HGI48_RS19835	0.76	+1.0
4,433,331	-		HGI48_RS19835	0.76	-1.5
4,433,331	-		HGI48_RS19835	0.76	-0.8
4,433,353	+		HGI48_RS19835	0.77	-0.5
4,433,393	-		HGI48_RS19835	0.79	-1.3
4,433,477	-		HGI48_RS19835	0.82	-0.4
4,433,498	+		HGI48_RS19835	0.83	-2.6
4,433,666	+		HGI48_RS19835	0.90	-2.0
4,433,666	+		HGI48_RS19835	0.90	-2.6
4,433,666	+		HGI48_RS19835	0.90	-0.2
4,433,667	-		HGI48_RS19835	0.90	-1.3
4,433,695	+				-0.4
4,433,695	+				-1.0
4,433,695	+				-1.3
4,433,695	+				-1.0
4,433,696	-				+0.7
4,433,696	-				-0.5
4,433,698	+				+1.7
4,433,698	+				-1.2
4,433,698	+				-0.3
4,433,698	+				-0.0
4,433,698	+				+1.0
4,433,698	+				+0.8
4,433,698	+				-0.6
4,433,699	-				-2.8
4,433,699	-				+0.4
4,433,699	-				+1.0
4,433,804	+				-0.2
4,433,804	+				-0.4
4,433,848	+				+0.6
4,433,848	+				+0.3
4,433,849	-				+0.3
4,433,849	-				-0.5
4,433,849	-				-1.9
4,433,849	-				-0.2
4,433,849	-				-1.3
4,433,875	-				-1.2
4,433,885	+				+1.0
4,433,885	+				-2.1
4,433,886	-				-0.2
4,433,896	+				-0.0
4,433,897	-				-1.6
4,433,897	-				+1.6
4,433,897	-				-1.3
4,433,897	-				-0.7
4,433,900	+				-0.1
4,433,900	+				-0.0
4,433,901	-				+1.0
4,433,915	+				-0.0
4,433,915	+				-1.2
4,433,915	+				-0.6
4,433,915	+				-0.8
4,433,915	+				-2.3
4,433,915	+				+0.6
4,433,915	+				-0.9
4,433,915	+				+0.4
4,433,915	+				+0.3
4,433,915	+				-0.6
4,433,916	-				-2.0
4,433,916	-				-0.6
4,433,916	-				+0.3
4,433,916	-				+1.2
4,433,916	-				+0.4
4,433,916	-				+0.8
4,433,916	-				-0.3
4,433,916	-				+0.5
4,433,916	-				+0.6
4,433,916	-				-2.3
4,433,916	-				-0.0
4,433,916	-				-1.2
4,433,916	-				+1.0
4,433,916	-				+0.1
4,433,916	-				+2.9
4,433,936	+				-0.2
4,433,936	+				-0.0
4,433,937	-				-1.0
4,433,937	-				-0.0
4,433,937	-				-1.3
4,433,939	+				+0.2
4,433,939	+				-0.0
4,433,939	+				-2.6
4,433,940	-				-0.0
4,433,991	+				-1.0
4,433,991	+				-0.6
4,433,992	-				-1.0
4,434,019	+				-0.0
4,434,019	+				-1.6
4,434,019	+				+0.2
4,434,019	+				-0.6
4,434,020	-				+1.7
4,434,020	-				-0.3
4,434,020	-				-1.0
4,434,023	+				+0.3
4,434,023	+				-1.0
4,434,024	-				-1.6
4,434,024	-				-2.7
4,434,024	-				-1.2
4,434,024	-				-0.0
4,434,090	+		HGI48_RS19840	0.11	+1.0
4,434,090	+		HGI48_RS19840	0.11	-0.7
4,434,196	+				+0.4
4,434,206	+		HGI48_RS19840	0.19	-0.4
4,434,207	-		HGI48_RS19840	0.19	-1.2
4,434,218	+		HGI48_RS19840	0.20	+2.5
4,434,219	-		HGI48_RS19840	0.20	-0.6
4,434,219	-		HGI48_RS19840	0.20	-1.3
4,434,253	-		HGI48_RS19840	0.22	-1.0
4,434,261	+		HGI48_RS19840	0.23	-0.5
4,434,261	+		HGI48_RS19840	0.23	-1.1
4,434,261	+				+1.0
4,434,261	+		HGI48_RS19840	0.23	+0.3
4,434,262	-		HGI48_RS19840	0.23	-1.3
4,434,262	-		HGI48_RS19840	0.23	-1.0
4,434,262	-		HGI48_RS19840	0.23	-2.2
4,434,262	-		HGI48_RS19840	0.23	+0.4
4,434,262	-		HGI48_RS19840	0.23	-1.0
4,434,265	+		HGI48_RS19840	0.23	-1.0
4,434,265	+		HGI48_RS19840	0.23	+0.3
4,434,265	+		HGI48_RS19840	0.23	+1.3
4,434,265	+		HGI48_RS19840	0.23	-0.0
4,434,265	+		HGI48_RS19840	0.23	-0.6
4,434,265	+		HGI48_RS19840	0.23	-0.4
4,434,265	+		HGI48_RS19840	0.23	-1.8
4,434,265	+		HGI48_RS19840	0.23	-0.6
4,434,265	+		HGI48_RS19840	0.23	-0.7
4,434,265	+		HGI48_RS19840	0.23	-2.0
4,434,265	+		HGI48_RS19840	0.23	-1.0
4,434,266	-		HGI48_RS19840	0.23	-0.5
4,434,266	-		HGI48_RS19840	0.23	+1.0
4,434,266	-		HGI48_RS19840	0.23	+0.2
4,434,266	-		HGI48_RS19840	0.23	-0.8
4,434,266	-		HGI48_RS19840	0.23	-2.5
4,434,266	-		HGI48_RS19840	0.23	-1.0
4,434,266	-		HGI48_RS19840	0.23	-0.7
4,434,266	-		HGI48_RS19840	0.23	-0.6
4,434,339	-		HGI48_RS19840	0.28	-1.2
4,434,339	-		HGI48_RS19840	0.28	-0.7
4,434,513	+		HGI48_RS19840	0.40	-0.6
4,434,513	+		HGI48_RS19840	0.40	-0.3
4,434,514	-		HGI48_RS19840	0.40	-2.9
4,434,514	-		HGI48_RS19840	0.40	-2.6
4,434,578	+		HGI48_RS19840	0.45	+1.1
4,434,578	+		HGI48_RS19840	0.45	-0.3
4,434,578	+				-0.6
4,434,578	+		HGI48_RS19840	0.45	+1.6
4,434,578	+		HGI48_RS19840	0.45	-1.6
4,434,578	+		HGI48_RS19840	0.45	+0.3
4,434,579	-		HGI48_RS19840	0.45	-1.0
4,434,579	-		HGI48_RS19840	0.45	-0.8
4,434,715	+		HGI48_RS19840	0.54	-1.6
4,434,728	+				+0.4
4,434,728	+		HGI48_RS19840	0.55	-1.2
4,434,729	-		HGI48_RS19840	0.55	-0.0
4,434,761	+		HGI48_RS19840	0.57	-0.2
4,434,764	+		HGI48_RS19840	0.58	-1.3
4,434,764	+				-0.0
4,434,765	-		HGI48_RS19840	0.58	+1.3
4,434,782	+		HGI48_RS19840	0.59	+0.5
4,434,782	+		HGI48_RS19840	0.59	-1.1
4,434,783	-		HGI48_RS19840	0.59	-1.6
4,434,797	+		HGI48_RS19840	0.60	-1.5
4,434,797	+		HGI48_RS19840	0.60	-0.0
4,434,812	+		HGI48_RS19840	0.61	-0.2
4,434,812	+		HGI48_RS19840	0.61	-2.2
4,434,813	-		HGI48_RS19840	0.61	-0.6
4,434,813	-		HGI48_RS19840	0.61	-1.0
4,434,868	+		HGI48_RS19840	0.65	+1.0
4,434,868	+		HGI48_RS19840	0.65	-0.8
4,434,869	-		HGI48_RS19840	0.65	-1.2
4,434,869	-		HGI48_RS19840	0.65	-1.0
4,434,869	-		HGI48_RS19840	0.65	-1.6
4,434,869	-		HGI48_RS19840	0.65	+0.7
4,434,888	+		HGI48_RS19840	0.66	-1.3
4,434,889	-		HGI48_RS19840	0.66	-1.8
4,434,889	-		HGI48_RS19840	0.66	-1.3
4,434,897	+				-0.0
4,434,897	+		HGI48_RS19840	0.67	-1.9
4,434,897	+		HGI48_RS19840	0.67	-1.3
4,435,057	-		HGI48_RS19840	0.78	-0.0
4,435,109	+		HGI48_RS19840	0.82	-2.1
4,435,109	+		HGI48_RS19840	0.82	+0.9
4,435,109	+				-0.6
4,435,120	+		HGI48_RS19840	0.82	-2.5
4,435,128	+		HGI48_RS19840	0.83	-0.8
4,435,128	+		HGI48_RS19840	0.83	-1.1
4,435,133	+		HGI48_RS19840	0.83	-1.3
4,435,133	+		HGI48_RS19840	0.83	+1.5
4,435,133	+		HGI48_RS19840	0.83	-1.4
4,435,134	-		HGI48_RS19840	0.83	-1.7
4,435,134	-		HGI48_RS19840	0.83	-1.6
4,435,134	-		HGI48_RS19840	0.83	-1.0
4,435,134	-		HGI48_RS19840	0.83	-3.1
4,435,134	-		HGI48_RS19840	0.83	-1.3
4,435,134	-		HGI48_RS19840	0.83	-0.4
4,435,134	-		HGI48_RS19840	0.83	-1.3
4,435,134	-		HGI48_RS19840	0.83	-1.6
4,435,151	+		HGI48_RS19840	0.85	-0.7
4,435,151	+		HGI48_RS19840	0.85	-0.8
4,435,152	-		HGI48_RS19840	0.85	-1.0
4,435,188	+		HGI48_RS19840	0.87	-1.1
4,435,189	-		HGI48_RS19840	0.87	-0.3
4,435,279	+				-1.2
4,435,306	+				-0.2
4,435,306	+				-0.9
4,435,306	+				-1.3
4,435,307	-				-0.8
4,435,307	-				-1.0
4,435,360	+				-2.3
4,435,360	+				+1.0
4,435,360	+				-1.6
4,435,360	+				-0.0
4,435,361	-				-2.3
4,435,361	-				-1.1
4,435,361	-				+0.2
4,435,361	-				-0.2
4,435,458	+				+1.0
4,435,600	+		HGI48_RS19845	0.16	-0.5
4,435,601	-		HGI48_RS19845	0.16	+0.6
4,435,601	-		HGI48_RS19845	0.16	-0.4
4,435,774	+		HGI48_RS19845	0.29	+0.8
4,435,774	+		HGI48_RS19845	0.29	-1.8
4,435,774	+				-0.6
4,435,774	+		HGI48_RS19845	0.29	-0.6
4,435,774	+		HGI48_RS19845	0.29	-2.0
4,435,775	-		HGI48_RS19845	0.29	-1.3
4,435,775	-		HGI48_RS19845	0.29	-0.4
4,435,775	-		HGI48_RS19845	0.29	+0.2
4,435,775	-				+1.7
4,435,782	+		HGI48_RS19845	0.30	-0.2
4,435,782	+		HGI48_RS19845	0.30	-0.3
4,435,782	+		HGI48_RS19845	0.30	+1.6
4,435,782	+		HGI48_RS19845	0.30	-1.8
4,435,782	+		HGI48_RS19845	0.30	-0.7
4,435,782	+		HGI48_RS19845	0.30	-1.5
4,435,783	-		HGI48_RS19845	0.30	-0.5
4,435,783	-		HGI48_RS19845	0.30	-1.6
4,435,783	-		HGI48_RS19845	0.30	+0.7
4,435,783	-		HGI48_RS19845	0.30	-0.4
4,435,783	-		HGI48_RS19845	0.30	-1.6
4,435,783	-				+1.0
4,435,783	-		HGI48_RS19845	0.30	-0.0
4,435,783	-		HGI48_RS19845	0.30	-2.2
4,435,783	-		HGI48_RS19845	0.30	-0.4
4,435,783	-		HGI48_RS19845	0.30	+0.2
4,435,783	-		HGI48_RS19845	0.30	+1.3
4,435,783	-		HGI48_RS19845	0.30	-1.4
4,435,783	-		HGI48_RS19845	0.30	-1.4
4,435,783	-		HGI48_RS19845	0.30	-2.9
4,435,833	+		HGI48_RS19845	0.34	-0.3
4,435,984	+		HGI48_RS19845	0.46	-1.6
4,436,016	+		HGI48_RS19845	0.48	-1.0
4,436,016	+		HGI48_RS19845	0.48	-0.2
4,436,017	-		HGI48_RS19845	0.48	-2.6
4,436,017	-		HGI48_RS19845	0.48	-3.4
4,436,034	+		HGI48_RS19845	0.49	-1.4
4,436,034	+				+2.0
4,436,034	+		HGI48_RS19845	0.49	+0.1
4,436,035	-		HGI48_RS19845	0.50	-1.0
4,436,035	-		HGI48_RS19845	0.50	+0.6
4,436,235	+		HGI48_RS19845	0.65	-1.9
4,436,235	+		HGI48_RS19845	0.65	-0.0
4,436,236	-		HGI48_RS19845	0.65	+0.6
4,436,247	+		HGI48_RS19845	0.66	-1.3
4,436,247	+		HGI48_RS19845	0.66	+0.1
4,436,247	+		HGI48_RS19845	0.66	+0.1
4,436,248	-		HGI48_RS19845	0.66	-1.0
4,436,248	-		HGI48_RS19845	0.66	+1.0
4,436,248	-				+1.4
4,436,277	+		HGI48_RS19845	0.68	-0.5
4,436,278	-		HGI48_RS19845	0.68	-1.6
4,436,303	-		HGI48_RS19845	0.70	-1.9
4,436,303	-		HGI48_RS19845	0.70	-0.2